RNA id: XM_036958960.1


Basic Information

Item Value
RNA id XM_036958960.1
length 4694
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110502069
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22239178 ~ 22636506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAAtagtatctcactctctctccgtctctcgatctcactctctctctctctcaccgcagGTGGATGGCACACCACGTGGCCCTCTTGCGCTATCGAGTGTAATTATAACACATTGGCTTTGGGCTTTAAAATTACAAGCCTGCCCACGGATTGTTTCATCTTCTTCTTAAAATAATTTACCCCTTCAAATCCGTGAGTAGGCCTTTAGTTAAGACAGAATGCAGGTGTTACGGAGGCGCTTGTTGAACGGGAGGCACAAGGCGTGAAAAAGGCACTAGGACCGGGGAGATTTCCCTCTCAGGAGCGCAGGCTATGAGCATCGCATCCACATAGCGGGGCTGTGGAGGAAACCCCCCCATAGGATCTGGCAATACAGGATACTTGCGATTATATCCATACATTTATTTTCCAGTCTGTGGCGTGGTGCGGTTTAGCGGAGTGCACAGTCCTGCGTTTGGGATGGTTGGGCACACTCCAGAGAATTCCTGATCGAACCTCTTGGCGCAAAGCGAGCAGGCAGATTTCGGGGGGAGTTCAGTATGCTACGCTCTTCCATTGCCCCCCGTTCGTTTTGTAAATGCCATATTTGTTGCCTTTTATTTTGTAGTTGGTCATAATCATTTCGTTGTTTTTTTAAACTATAGAAACCCCATTTTCTTCGATCTCTAAGTCTCTCACCTAAATGCACGTCTGTTTATTGAGTGAGCTTGGCACTTTTTCATCCATCTGAGAACAGAAACAAGATCCACATCTTTCTCTTTGGATTAAACTGCCGTTTAAACCGCCGCGGCTATCGTCCGAATGGGTGATCTGCTTGAAATACAGTTCTTCTGTGGCACCCTGACACTCcatggaaacatgttctctctgGCTGATCCCCGTCGCTGTGATGTCCAAAGCTTCCCCCACTGACTGACGGACGCTCGTGGATCATTTTGTAAAGCGATTTGAAGGCTGTTAGGTCAAGGGGAAAATGAGGCCTCCTAGCCCTCTCCTGATCCTGCTGTATGTCACCCTGTCCCGCGCCATGAAGACAGTCTCCAAGAGAGGCTCAGttGACCTCTGTACAGACTGGTCAGTGGATTACCTGAAGTACCGTGTGCTGCAGGGAGAGCCGGTGAGGCTGAAGTGTGCCCTGTTCTACGGCTACATCCGGGCCAACTACAGCCAGGCTCAGAGCGTGGGCCTCAGCCTCATGTGGTACCGCAGCACTGGCCTGGGTCACGGAGACTTCGAGGAGCCCATCTCCTTCAACGGCGTGCGCATGAGCAAGGAGGAGGACGCCATCTGGTTCAGACCGGCCGACCTGCAGGACGTGGGCCTCTACTCCTGCGTTCTACGGAATTCAACCTACTGTATGAAAGTGTCCATGTCTCTCCACGTGGCTGAGAACGACACAGACCTCTGCTACAACTCTGAAATGAGACATATGGAGAAGGCCGAACTCAGCAAGAGCAAAGACATCACCTGTCCAGACATAGAGGACTACATAGAACCTGGGAAAGATCCTCATATCATCTGGTTTAAGGAGTGTCGTCCTAAGCAGTGGCGGGCCTCCATCCTCCAGAGAAGAGACTCTCTGTCCATCAGAGAGGTCAAAGAGGACGACATCGGCAACTACACCTGTGAGGTCACCTTCGGGGCCTTCGTGGTACACAGGACCACTGAGCTCACCGTCACAGCTCCTCTGACTGACAAGCCACCAAAGATCCTTTATCCTTCTGAGAACAAGATCAGCAACATGGAGCTGCAGCTAGGAAGTGCCCTGAACCTGACGTGCAGAGCTTTCTTCGGCTACGCAGGGGACGCCAGTCCGCTAATCTAttggatgaagggagagaagtTCATTGAGGACCTGGATGAGGCGAGAATCGAAGAGAGTGAAATCAAGGTGGTCCGGGAGCACCTGGGGGAACAGGAAGTGGCCATCTCCTTAACGATCCCCTTGGTGGAGGAGGGGGACCTGGGAAACTACTCCTGCTACGTAGAGAACGGCAACGGGAGACGGCAGGCCAGCATCCAACTTTCCAAAAGAGcagagcTGATGTACACGGTAGAGTTGGCTGGTGGTTTGGGAGccatcctgctgctgctgctcttcctcatctctctgtaTAAGTGTTATAAGATTGAGCTCATGCTCTTCTACAGGAGACACTTCGGCAGCGACGACCTGGATGTAGATAATAAGGACTATGATGCGTACCTGTCCTACACTAAAGTAGACCCTGACCAGTGGAGTCAGGAGACCAAGGAGGAGGAGCGCTTTGCCCTGGAGATCCTCCCTGACGTCCTGGAGAAACACTACGGATACAAACTCTTCATCCCAGACAGAGACCTCATCCCCACGGGAAGTCTGGCCAATGAGCTTTACCAGGATGACACAAGACTTCTTAGAGcCTACATCGAAGACGTGGCGCGCTGTGTGGACCAATCCAAGCGCCTCATCATCGTCATGACGCCCAACTACGTGGTACGGCGGGGGTGGAGCATCTTCGAGCTGGAGACACGCCTCCGCAACATGCTGGTCACCGGGGAGATCAAGGTGATTCTGATCGAGTGTGCCGAGCTGCGTGGCATCATGAACTACCAAGAGGTGGAGGCCCTCAAACACACCATCAAGACCCTCACCGTCATCAAGTGGCATGGCCCCAAGAGCAACAAGCTCAGCTCCAAGTTCTGGAAGCAGCTGCAGTATGAGATGCCCTTCCGCCGCACCGAGCCAATGCTGAGCCACGAGCCAGCGCTGGATGTCAGCGAGCAGGGCCCCTTCGGCGAGCTCCAGACCGTCTCCGCCATCTCCATGGCAGCCGCCACCTCCACCGCCATGGCCACGGCACACCCGGAGCTCCGCTCATCTTTCCACAACTCCTACCACACCACCATGCGGCAGAAACACTACTACCGCAGCTACGAGTACGACCTGCCGCCGGGGGGCACGCTGCCGACGCTGTCATCACTAGGCAACCAGCACACCTACTGCAACATCCCGCTGACGCTGCTGAACGGACAGAGGCCGCCAGCGGGGAAGAGCCGCGAGCACAGTCTGGAGGAGGAGCACACTAACCACGCCATGCTGCCGCTGTTGCCCAGGGAGACCAGCATCTCCAGCGTCATCTGGTGACCGGGACAGGATAGAACCATGCGACACTAGTGGTTTGGTCTGGCCTGGTTTGGGTTGGATCACTTTGGATTGGTTTGGTGGCGTAGTCACGCTTCAATGAGCCAGTTCTGATTGGCTACTGTAGCTATAGCTGAGAGATTGTGACGAGTTTGGGTTGGAATGGACCCCTGTCAACAGGCAAGACAGGGTCAAGGCAGGTTTGGATTTAACGTGGCCCTCATGTACACAGAGGAGGAGTTCTTCACCCAAGGATTAAAGATACAGACTGACAACAACAAACTGTTTGATCAAGAGACTACAGAGTTTGATCAAAATGAACTCGTGAATACAAAATAAAAGAACCCACACACTTTGGCACTTGTGCActtgcacacacacttgcacacacacatacactcacacacactaaagGAAAACAGGGTCTTGTACATATATTTCCAATTTATTTGTAGCATCAGTGTCTTCCTGTTTTTTGTTCATATGTTGTTTTTTATTAAATCGTGTGTGTTGCCTTCTCTACTTTAAGACTTTGCTTTAACTTGTCACAcagatttatatatttatatttgttcagtttttttctttgttaaaattgttttttttgttttttttatatgcTTATGAAGAAAGCCAGTATGTCATGTATCTGCGCTGTTGTGTTTTTTTATCTTGACTTTGTGTAGTTTAAgatatatattattttcttttACACTTTTGGGGAATTGCTTGGACATTGCAACGTTTTACTTCAAGGAGCAACATCTTATTTTTGTTGACCTGTATAAGGTGTATATCTAGTtttaaaaacactttaaaaaatCATAGAATATGCAAAAAGAAGGAGGAGCTACCGGTGATGTTGATGTAACTTCCTGTGGGCCAGAGGAAGGGGACAAGTTAGGGAGTCGTGCTAGTCTTCTCCAGTCAGCCCGTCGGTCAGTCAGAGTTTCATATTTTCTATAAAAACAAACAGCCTTGCTGTTTTAGCGTGATAGTAAAATGCCTCACCTTAAAAATAAATCTGTAGATTATTTTAAAAATACGTATATTTTTATAACAAAAAGAGTTTGCTTGAGAAGTCATACTTATTTACGTTTCATCTGACATTTAGGGAGAGGTATGCAGTGTGTGTAATGCAGGTTTTGTACACTACTTTGCAATATGGGTCATGGTTTGTTAAGACAACAAGATGGATTTTGAGTCCCTCATGAAAATATTCTTAGATTCAAAAAGTGAATGCATTTTCAATGTTTTGGTTGAGTTGTTCAAGTATTCTTTCCATCCTGAGAATCCTTTGTTTTTAATCCATAGGATAGGTCATGTTTAAAGAAAGAAGAAGCATAAGTCTGTGCTTTGGAATACGTTTTTTAATTATATTTGAAGGTGTAATTTCTGAGTATGCATAGCAAATAGATATGTATTCTATATATGATATagatatttatataaatatatatatatataaacacaattTTCACTTGGAAAGAAATGTCTATCTTTATAGAAACACAATCATACTTATCAGTTGCCCTTACTTTCTCACTGCACATTAAAAATGTTGATCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047973 lncRNA downstream 3418 22234719 ~ 22235760 (-) True G1789168
TU2047959 lncRNA downstream 10772 22228203 ~ 22228406 (-) True G1789159
TU2047946 lncRNA downstream 17354 22221556 ~ 22221824 (-) True G1789146
TU2047938 lncRNA downstream 22122 22216850 ~ 22217056 (-) True G1789140
TU2047922 lncRNA downstream 43256 22195704 ~ 22195922 (-) True G1789124
TU2048629 lncRNA upstream 129258 22765753 ~ 22766067 (-) True G1789773
TU2048647 lncRNA upstream 138543 22775038 ~ 22775276 (-) True G1789791
TU2048656 lncRNA upstream 145889 22782384 ~ 22782598 (-) True G1789800
TU2048658 lncRNA upstream 146228 22782723 ~ 22783050 (-) True G1789802
TU2049092 lncRNA upstream 382126 23018621 ~ 23018841 (-) True G1790215
XM_021579278.2 mRNA downstream 217824 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 217824 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 217824 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 281474 21936514 ~ 21957704 (-) True stk17b
XM_021579275.2 mRNA downstream 281484 21936514 ~ 21957694 (-) False stk17b
XM_021579286.2 mRNA upstream 354199 22990694 ~ 22996267 (-) True LOC110501602
XM_036959585.1 mRNA upstream 387475 23023970 ~ 23042872 (-) True LOC118943636
XM_021579287.2 mRNA upstream 420149 23056644 ~ 23079505 (-) False dcbld2
XM_021579288.2 mRNA upstream 420149 23056644 ~ 23079508 (-) True dcbld2
XM_036959550.1 mRNA upstream 561271 23197766 ~ 23235686 (-) False LOC110502006
TU2047639 other downstream 418233 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1783195 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1893164 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2580078 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2917319 19321188 ~ 19321859 (-) True G1785753
TU2049161 other upstream 527986 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 796499 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 1690234 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2212096 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 2220329 24856824 ~ 24857885 (-) True G1792345

Expression Profile