RNA id: XM_036959546.1


Basic Information

Item Value
RNA id XM_036959546.1
length 3535
RNA type mRNA
GC content 0.54
exon number 22
gene id LOC110502006
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23197766 ~ 23235688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGGTCTCCCTGCATCCCAGAGCACAGCACAGAGCCCCAGAGCATCAAGCCCTTCAGCCTCAGACACAGCCTCAGCCAGAGCCTGTCCAGTGTGCTGCACTAGTCCTGAGACCCACCAGCTCAGTGAAGTAGTCCAGCCACCAGAGTCAGCATACCTCACACAGAACTAGGATAATTACTTTACTATCCTAGTTCTACTATCCTAGTTCTAATGTtctagttctactgttctagtcaTGTACAAGGCTCAGTCTGTGAACTAGTCCAGAGCTGGTTGATATTTACTCTGTGAAAGTTCTCCAGTACTGTAGTCCAGTAGCTCACCTTAGTCCACCTCTTAGTCCTGGACTGAGATTATTAAGTCTTCAGTCAACTGCATCTAGTGAGAGCCACCAGCCAGTCCTGAGACCGCTGCAGATCACCTTCCACCATGCAGCTCTCACACACCTTCctcgtcttcctcttcctccttttcatcGTTGGGATTGCACTGGCCGGCTCATCCACGGCTCGGAGAAGCAGAGTGCGACGTCAGAACATGAAGGTGAGGATCAACGCTACAGGCGACACCATCGTGATGAAGTTTGTACGTCCGAACGCTGACACCAAGCTGGAGGGCTACATCCTGGGCTACGGCAGCAGCATGTTCTCTAAACAGTTTATCCAACTCCCAGAGAACGGACTGCCATACGAGACAGAGATTGATGCCGAGCCCAAGTACCTGATCGCTGTCCAGCCCATCCCAGTCAATGATGTGAAGAAACAGTGCACAGGCAACGTGAACCTGGAGAAGCCCCTCCACCTGGTGATTGGGTCCGTGACCCCCACCTccgtgctgctgtcctggggaaCCCTCCTCAAGACGCCCTACGAGGGGAACATCATGAACGACTGCCTGGAGGACGGGAACTACACGGTGCGCTACCGTGAGAGGAACCGGAAGTGGACCTACCAGACGTGCCCCGCAAGCGACACGGTCATCGACAGCCTTAAGCCCAACACGGCCTATGAGTTTGGTGTCCGACCCAACAACAAGGAACGCAGCGGAGTATGGAGCAAGCCAGTCATCCACAACACCAACATGAGCGGGAAGGCCATGCAGAAACCCTACAAACCAAGGACACCTCTGAAGCCTGTGAAAACGGTCAACATGCCACGGGCCTTCTTCCCTCCTCGTCACGCTGTCCATAACAGGAGCCAGGGCAGAACCCTCTTCAGGACACCTGTAGCTCCAAGGACCACCTTCGCGCCAACCTCGGCCAATAGACAGCACTTCGTGTCCACTCCCCGACCCACAATGCCTCAGGTGCAGCACGAGCCAACTGGACGAGCAGATCAGATCatatctgcctcctctccttctgtgGATCTCCCCCGTGCCTCACCTGCCATCCCCCTGCCCTCCCCCAACCTCTCCTTACTCTCCCCTCAGCTCCtaccctcccccaccctcccccatgcctccccccagctcctgccctCCCCCAACCTTCCCCTGACTTCCCCAGCTGACCCTGTACTTAACCCCAATCGTAACGGACAGAGACACAGGGGACCGGCCCAGGCTAGGCCCCAACAGGCCCAGCCCCAACAGCCTGCTAAGGTCACCCAGAACCGACAGACCCCCACGGGTACCAGCTTCCTGAGACCTTTGACCCCTACCGAGCCTCGCTCTCCTTCACGCTCTGTCGTTGTCACGGTGGCCAGAAACACAACGTTGCCTCGCAGTCGcgtctctctctactccaccccTAACGgcatcagacctctctctctacccagggACACCAACACCAACTCCTCCCTCACCTCCGACACACCAGGGGCCGACTGGGAGCACAATAAGGGCCTTGCTCTTCCCAAACCTGCCATCTGGTCCAGAAAGCGACTGGGCTCCCCTGCAGTTCTGCAACCCTTTCTTCCTGTCAACAAGAGGCCCAACCTGGTGGGGAAATCAGGGAACAAGGATAAGCTGATGGACCTGAAGCAGGGAGACAAAGCGTCCATCTTGAGGTCTTTCCCTCTAGTCACGGCTAAGCCCACCAAACAAAAGACCACAACCCTCACCCCGGCCTTGAATGCCACAGGTGACAACTCCTCTGTGTTCAGCTCTCTCCCTACTTCGGAAGTGGACGCCATGGGCAAGAAGCGCTTCGTAGCCCCTCATGTGATCTATAAGACTGACAAGAAGCCAGACGAACCGTGTTCCATAACAAAGTCCCTCAGCTTCTTCcctgaggaggagggggtggagcaGAACGTCACCGCACCCCCCCGCTTGCCCCCCTCCAACCTCACCGTGGTTACTGTAGAGGGATGCCCCTCCTTTGTCATCCTGGACTGGGAGAAGACCGACAACGACACCACAGAGTATGAGGTCATTTCAAGGACCCATGGACCCAATGGAGAAGAGGTGTCCATCCTGACCACCAACCAGACTCACACTGCAGTGGAGAACCTAAAACCAGAGAACagTTACGAGTTCAAAGTGAAACCCAAGAATGAGCTTGGGGAAGGGCCTGCCAGCAAGCCAGTGTTGTTCAACACAGAGTCAGcgGACCCTCGGGTGAGTGAGAATGTCTCAGGTAAAGATGCTATCTGGACACAGTTCCCGTTCAAAGCAGATTCCTACTCGGAGTGTAATGGGAAGCAGTATGTGAAGAGGACCTGGTACCGCAAGTTTGTGGGCATTCAGCTGTGCAACTCCCTTAGATACAAGATCTACATGAGCGACTCGCTCACCgGCAAGTTCTACAACATCGGGGACCAAACAGGTCATGGGGAGGACCACTGCCAGTTTGTAGATTCTTTCCTGGACGGACAAACAGGCAGCCAGCTATTGGCCGACCAACTACCCAGCCGATCAGGCTTCTACCGGGCTATGCGTCAGGAACCGGTCAACTTCGGCGAGATCGGAGGGAACTCACACGCCACCTACGTTGGCTGGTACGAGTGCGGAACACCCATACCTGGGAAATGGTAAGACCCCTCCACCAGAGGGGTGGCCAGGAAGATGCCTGACTGGAAGAATGATGATCTCaccagggtgagaggaggaggactgaGGAGGTTTCAGTGGCCCTTGAGGTGGGCTTCTCCCTCTTGTTACCATGGAGACTGCGTCAGTATGTTACCATGGAgatgcatctgtctgtctgtcagatggTGATGGCCCACATTCCATTGTATAAAAGTGTACAGGACCATACCTTGTCATGGAACTCTGAGTTCTTTTGTCATATCTCCTTAGGGGATCTATTCAATCCGCATACcggaagttcagctttacagTGTGATTGAATATTTAAAGGCAACGTTCCTGCTTTAGCAGAGACTGCTTTTACGATAAACACTGCTTATGTCGGCTAATATccgaaatgacctttacatttccaTCACGGAATCTGCTACTCTTCAGCTTTACAGACTGAACCGAGCCCTAAGTCTCATCTCAGTATTTATCAAACACGACATGAGGCAGTCCTCAAAGCCTGTAAAAACGGGAGAGAAGTTAATAAAGGTGTGTCAGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049170 lncRNA downstream 3598 23193820 ~ 23194168 (-) True G1790289
TU2049168 lncRNA downstream 5389 23190737 ~ 23192377 (-) True G1790287
TU2049092 lncRNA downstream 178925 23018621 ~ 23018841 (-) True G1790215
TU2048658 lncRNA downstream 414716 22782723 ~ 22783050 (-) True G1789802
TU2048656 lncRNA downstream 415168 22782384 ~ 22782598 (-) True G1789800
TU2049186 lncRNA upstream 1547 23237235 ~ 23237520 (-) True G1790305
TU2049197 lncRNA upstream 13304 23248992 ~ 23249257 (-) True G1790316
TU2049199 lncRNA upstream 14303 23249991 ~ 23250229 (-) True G1790318
TU2049200 lncRNA upstream 15100 23250788 ~ 23251076 (-) True G1790319
TU2049201 lncRNA upstream 15805 23251493 ~ 23251716 (-) True G1790320
XM_021579288.2 mRNA downstream 118258 23056644 ~ 23079508 (-) True dcbld2
XM_021579287.2 mRNA downstream 118261 23056644 ~ 23079505 (-) False dcbld2
XM_036959585.1 mRNA downstream 154894 23023970 ~ 23042872 (-) True LOC118943636
XM_021579286.2 mRNA downstream 201499 22990694 ~ 22996267 (-) True LOC110501602
XM_036958963.1 mRNA downstream 561260 22240745 ~ 22636506 (-) False LOC110502069
XM_021579884.2 mRNA upstream 62626 23298314 ~ 23324737 (-) False LOC110502001
XM_036959545.1 mRNA upstream 62626 23298314 ~ 23327132 (-) True LOC110502001
XM_021579880.2 mRNA upstream 97908 23333596 ~ 23351720 (-) False LOC110502000
XM_021579874.2 mRNA upstream 97908 23333596 ~ 23351721 (-) False LOC110502000
XM_021579875.2 mRNA upstream 97908 23333596 ~ 23351721 (-) False LOC110502000
TU2049161 other downstream 28403 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 778268 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1376821 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2741783 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2851752 20345699 ~ 20346014 (-) True G1786832
TU2049906 other upstream 197306 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 1091041 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1612903 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1621136 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1750271 24985959 ~ 24986268 (-) True G1792433