RNA id: XM_036959545.1


Basic Information

Item Value
RNA id XM_036959545.1
length 4649
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110502001
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23298314 ~ 23327132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctcgtccACGTTTCTCTCGCACTAAGCACCAATCCCAGTATTACACCAGTAACGTCTTAACAAGCTGCTCTAAAGGGCTTAGCCAACAAGATTAGGGAgcaaaaaaaaatctctctcATTGGGCCATCTGCCTACCTGTGGCCGCGAGCTGTTCTTCAGCACCACACCTTCCTCAGCCCACGGaagaaaggaggaaaggaggcCATCACTTTATTTTTCCTAgacctacacctgcattgcttgctgtttggggttttaggctgggtttctgtgcagcactttgagatatcagctgatgtaagaagggctttataaataaatgtgatttgacttTATCTAATCACTTCATAATTATTGGTGAGGGACTGATGCGTTTGCTGGATTTTGAACTATGCAATCTCGTAAGGAGGGACTAATACCATTTTTCAACCCCTCTGAGTTAAAACTACTACGGATTTAAGATGTCGGACTCTTTATTGAAATTTATTTTGTGTACACTTCCGTTCATTTTAGCGTTCGCACTTTTGGGAATAAGAACAGGTATGTAtttatgtaggtaggtaggactaaTAAATAATCAATGTACACATCAATCTACTGCAATTTCAGATGGAGTTGTTGTCCAATGTTATCCTTTTAATGTTTTACCACAGATGCTGCATCTGGAGAAGGACCTATTCTTCCTGATGGACAGGATCTTTATTTCAAAATAGTTGGCATTTCACCCATTCTATCAGTTCCTCAAAGCATAGTTCATTCACCTGTCCTCAAGGTTTCAAACAAGGACCATGGAGCTACCCACCGGCAGAAGCGCAATGTCCTTTTCCCCAGCGGGGTCAAACTCTGCGGGCAGGAGAGTGTGCAACAAGCCATCGCAAATCATCTCAGCTACTTTCACCTTCGAGtgtgtcaGGAGACGGTGTGGGAAGCCTTCAAGATTTTCTGGGACCGCCTCCCGAACCAGGAGGAGTACCAGACCTGGATGAGGCGGTGCCTGGACGGCACAACCACCGCTCTGGACATGGGCAACAACTTCAGCCAATCAGAGGAGCACCTGGCTCTGGTTGAGAGTAGAATGTCAGTGACGGAGTTAAAAAGGCAAGGCATCATATCCTGTTCACTTTATTTGCCATTGTAACCACTCTTTGTGCGTATTCACTGGGCAAGACCCTTGTATTTATtacatgtctcattcatttccCCATTGCTGTTTTCTCTACTTCTGTTCTATCAACTGTAGTGATGCCACCAACTCATGGTTACATATGTGCAGCACCCAGACTCCAGACACAGAACAGGAGGCTCAAGAGGTCGTCGGTGAGGTCCTCATAGAGGAGCCAGAGGCTGCGGAGGCGGGGCCTTCCAAAGAACCCACAAATGACATAGAGATGGATGTGTTGGCGCGGGTCCATCTGGAGCAGGTGGTGGAGCTGAGTATCCTGCtgaagggagagaggtacagcGATGCTCTCAGAGACCCTGCCAGTCTCCAGTACCAGACACTCAACCAGCAGTTCACTGACAAGATAAAGGATGCTGTGGGGGGACTGCCAGGCTTTAAGAGTGTGGCTGTGCTGCAGTTCAGGCTTCAGAAGGATGCCCAAGGGTtggatggtgtggtggtggtctATGCGGTGACAGTGGAGGTGGAAGGGGAGGGGGTGAGCAGTGACCAGCTGGACTACCTGACCCTGCAGTCCAATCTGGTGGAGAACTCCTAcagagaggtgaaggagaggaacTACATCACTGAGGCCCAGCACAAGGACAACATTATCAGTGATACAACTCTGGTCCTGGACCCTGACTCACTGCAACTATATACTGTGTCCAGTGTTACGGAGTCCTTTGAGCCCACCCATGGAATACCCGAGGATTACACCAACGGCAGTGTGGAGGACATTTTGGCTGTTGAGATGACTCCAACCGAAGTTGAAGCACAGGATGTAGCGACGGGGGAGAATGATGTCATTGTTGTAGAGGAGAACATGACCCTCCCCACTGAGGTGACCATCGATGACACAAGCATCGAGGAGGAGGTTCTGCTGTTGGGGAACACCGTGTCTACAGAGAGCCCTTTGTTGGAGGACCTCCCTACAGACCCTACCTCCCCTGAGCAGCCAAAGGGTGCTACGCTCCCCGAGCCTCCTCTGGAGATTGAGGCCTCTGGTTCAGGTCTTAAAGTACTGAAGGACTTGCACTTCCAGCCTGAGGAAGAAGAAGCCATAGAAGAAGAGCCAGCTCCAGAAGAGGAACTGACCATAGAAGAAAAGGTAGTTCCGGAAGAGGTAATCATCGAGGAAGATGTCCAAACAGAGGAAGCAGAAGTGGTGGTCTCCGAGGAAGATAAGGTAGAGGAGGAAGCTGGAGCCTCTGAAGACCTAGAGTACTCCATCATAGAGACGGAGACCATTGAAGAGGTTGAGGAAGAGGCCCCTGCCTTCGTCCCTGTGGAAATGATGGAAGCTCCCGAGCCAGTAGGGGGCCTCGGTGTCCCCGAGAATCCCCTTGCCATTGCGACTCTGCCCCCAGATGAACCTGAAGAGGAGACTAACGTGGTGCTGGCTTATCCAGAAATACCTGAATATGGAGAGGAAATTGAGAGCTTAGAGGGACCAATCATTGAGAAGCCATTAACTAAAGTGGATGCTGTGGAAGTGGAGGAAGAGGTGGCAGAAGAAGTGGTCGTTGAAGTTCCGGACATTTCTGAGATCTCGGAGGAGGACTTGGTAGAAGACGAGATCTTATTGGTCGATGAGGCTGCTCCGGACGCCACCcacaccacccctctctctgcgGAGAAAGAGTCACCCTTCACCCGAGTCTCTGATTTCATAGTATTGGAGGAGGTTACAGAGGCCACAGCCCTGGACACAGCCCCAGAACCAGAGGCAGAACAGGAGGACCAAGGGGTCACCCCAGCTCTCATACCCGCCGAGTACCACCCTGATCCCGACATTTCTATCACTCTGGAGCTGCAGACGATCGACCCTGTGACAGACTATGACCTGGTCCACTTCGGCGGGACAAACCAAACAGAGGAAGGGAGCAGTGGGTACCCTTCTGGAGTGGTAAATGGTACAGACCACAGCATTGCCATGCCAATCAACCCTGGGCGGGCTCTGATGGTGTTCTTCAGGCTGAGGGTCACCAACATGATGTTCTCAGATGACCTCTTCAATAAGAGCTCCGCAGAATACAAGGCCCTAGAACAAAGGTTCCTCGAGCTGCTGGTCCCCTACCTCCAGTCCAACCTTACTAACTTCCAGAATCTGGAGATCCTGAACTTCCGGAATGGGAGTATCGTGGTCAACAGCCGGATGAAGTTCGGGAGGCCGATGCCTCGCGGCGTCAACAATGCAGTCTACTTGATCCTGGAAGACTTCGCTAACACAGCCTACCAAACTATGAACCTGGCCATCGACAAGTACTCACTGGATGTAGAGTCAGGTGACCAGGCCAACCCCTGTAAGTTCCAGGCGTGTAATGAGTTTGCCCAGTGCTCTGTGAACCGCTGGTCTAGCGAggcggagtgtgtgtgtaatgctgGCTACTTCAGCGTGGAAGGTCTGCCCTGTCAGAGCATCTGTGAACTGCAGACAGACTTCTGTATGAACGACGGGAAGTGTGACATCATACCTGGACAGGGGGCCATCtgcagATGTCGTGTAGGGGAGAACTGGTGGTACCGTGGAGAACACTGTGAGGAGTATGTGTCAGAACCTCTGGTGGTCGGCATAGCGATAGCCTCTGTAGCAGGTTTCCTATTGGTGGCATCTGGTGTGATCTTCTTCCTGGCGAGGACACTACGGGATCAGTACGATAAGGATGAGGCTGAGGACCCCATACGgCGAGGGGAGAGTATCCCGTCTCTAGAGAGGGCCACTAAGTACAACCCCATGTATGAGAGTGAGGCCACGACGGGCTACAGCCACTACTACCGCCGCTACCCAGAAGCCCCGGTCTACAGCAGCGCCAGCGCCGAGGCCTCCACAGACTTCAGCAGTGAGGAGATACGCCACATCTACGAGAACAGCGAACTGACCaaggagGAAATCCAGGACAGGATACGCATCATCGAACTCTATGCGAAGGACCGGCAGTTTGCAGACTTTGTGCGGCAGCATCAAACTGCCCTGGATACACGCAGACAGAGCACCCTTGATAAACGCAGAGAGAGCACGTCCACGTAGCCCAGTATGGGACACTCAGCTGTATGCTGGACAACAAGGCTCCTGTATGGCTCCACACAAGCGAGAACACGGGTTACTGTGGTTGAACACAAGCTTACCTTCCACTTATGATATCGTCATGCCTTTTTCAATCTGTGTGTTCGTTTTCATACACATTTTCTGGTGTGCATAAACTGGTTTTCTCAACATTCTCTTCCTTCATCGGGACTCATAGCCAATGGGATGGATCCAGAACGCTGTCATGTAAATACTATCCGAGTATTGTGGTATGTTCTTTACACTAGAATGTCAACGGAATGCGCTTGACATGTTGACATGTTTTGTTGTACAAAATGATGATTATTTTTTAACGTAAGCACTGGTGGATATTTAAACAAATATTACATTACTACTTGCAGTTATGTCAATGTttattcttaaaatgaagcaatAAATAAAAAGACCCGTTTTCTAC

Function

GO: NA

KEGG:

id description
K19017 IMPG2, SPACRCAN; interphotoreceptor matrix proteoglycan 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049201 lncRNA downstream 46598 23251493 ~ 23251716 (-) True G1790320
TU2049200 lncRNA downstream 47238 23250788 ~ 23251076 (-) True G1790319
TU2049199 lncRNA downstream 48085 23249991 ~ 23250229 (-) True G1790318
TU2049197 lncRNA downstream 49057 23248992 ~ 23249257 (-) True G1790316
TU2049186 lncRNA downstream 60794 23237235 ~ 23237520 (-) True G1790305
TU2049930 lncRNA upstream 66262 23393394 ~ 23394736 (-) True G1790951
TU2049961 lncRNA upstream 138255 23465387 ~ 23465759 (-) True G1790982
TU2049962 lncRNA upstream 139005 23466137 ~ 23466405 (-) True G1790983
TU2049968 lncRNA upstream 143241 23470373 ~ 23470595 (-) True G1790989
TU2049969 lncRNA upstream 143952 23471084 ~ 23471411 (-) True G1790990
XM_036959546.1 mRNA downstream 62626 23197766 ~ 23235688 (-) False LOC110502006
XM_036959547.1 mRNA downstream 62626 23197766 ~ 23235688 (-) False LOC110502006
XM_036959548.1 mRNA downstream 62626 23197766 ~ 23235688 (-) True LOC110502006
XM_036959549.1 mRNA downstream 62627 23197766 ~ 23235687 (-) False LOC110502006
XM_036959550.1 mRNA downstream 62628 23197766 ~ 23235686 (-) False LOC110502006
XM_021579880.2 mRNA upstream 6464 23333596 ~ 23351720 (-) False LOC110502000
XM_021579874.2 mRNA upstream 6464 23333596 ~ 23351721 (-) False LOC110502000
XM_021579875.2 mRNA upstream 6464 23333596 ~ 23351721 (-) False LOC110502000
XM_021579876.2 mRNA upstream 6464 23333596 ~ 23351721 (-) False LOC110502000
XM_021579878.2 mRNA upstream 6464 23333596 ~ 23351721 (-) False LOC110502000
TU2049161 other downstream 128951 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 878816 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1477369 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2842331 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2952300 20345699 ~ 20346014 (-) True G1786832
TU2049906 other upstream 105862 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 999597 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1521459 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1529692 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1658827 24985959 ~ 24986268 (-) True G1792433

Expression Profile