RNA id: XM_021579878.2


Basic Information

Item Value
RNA id XM_021579878.2
length 4068
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC110502000
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23333596 ~ 23351721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAAACAACAGGATGTTCTTCTGAACCAGGAAAAGCTTGAAAACAACGCCAACCTTTGCCAACAACGTGTATTTATGATTTTATGGGCGTTGCAAATAATCAGCAAGATGATTTGGAGAGTGCAGTAGCTGTGTACATTTCCCGTCTCCTCGTTCTTTGGTCACGCGTGTGTATGTTGCACTAACTCACTGTATTACCGAATCTTGCTTGCTGCATCGCCATCGCTGCCTTGGTTGGTGACAGGAGGCTCTGGAGAAGGAGTGTCCATCAAGCCCTAAAGGGCCATAGCTTGGTCATGATGGACCACAGGAGAGCTCTAaccatttcactggctgttgacaaGGTGGATAACGCTCAAATTCATTGGTCCCAGATTGCTGGAGACAGAATCAAACTCCAAGATTCCCGTCAGCAGAATGGATCCATCTCTTTGGATCATGGCCAGGTGGCTTTAGCCCAAGCGGCAATGGACAGGCAGGTCCAGTTGGTCCTCACGGACGTTTTAAAGACTGAACAGGGGCTGGCCTACCTGGACAAGAAAAGGCGTGGCCTGATGACTgacaatggagagagaaagagagagtcgtGGGTGGGGAGTGGGCAGAGGAGGGTGTCTCCGAGcagcagagaggggggggaggatcGGAGAGATGACCCCCAATACAGAAAGAGACCCCATGACCACGACACACCCACCTCGACCCGCAAGGAGACGAGGTCACACCATAGAGGGGGgtcagaggaagaagaggagatgaAAGAAGTCATAATAGGAGAGGAGAACGagggtagtgtgtcAGGGAGGCGCAGGTCCGGGGTACCTATGGAGGAGGTGACCTTTCCTGAGGGGGACAGGCACCAGAAAAAGCGTTACCCAGAATCCACTAGGACCAGGAAGTTCAATTCAGGTTCAAGTGAATCCACACGCGCTGAGGGGGAGAGATGTAGGAGGGAGTCTGGGCTCTACTGTAATGGACAggtgaaggatggatggatgaaggatgGCGCGGTGGAGAGCTTGACCACAGACACCTCCAGGCGCTCCAGGGGGAGCGTGCTGCGCCTGTCCGGGGAGTCCAGAGGCGTGGGAGGACTGCTCCCAAAACGGCTCTGTCTGGAGGGGACAGGGGGCAGAGACACCAATGTAGCATCCATAGAGGTAGAGGTGGATCCCTCCGACTTTGACGGGACCTTGATGGTTGTCACTGTGGGGGAAGACGAGGAAGTTGTTAGCCCCTCTAACCCCAGctgtggaaaggagaggagaggaaccctGAGGCTGTGCCTGTCCTCCAGCCAGGATAGGTCGCCCAAACCCAGCCCTGCTGAACCCAtTGTTCTCTCCAGTGATGAGGAGGAGGTAGTCACCCCATCCCGCAGTTCAGTCCTTTGGCCACAGACTGGCGCTAGTGATTCTAAGCCCCAGAGAAATCATTCTCAGGAACAAATGGGGGCAGAGATGCACTCTCAGttGGTGCCTGTGGTGGTGACCGGATTTGGGGAGGCCCCCTTCCCCAGTACTGAGGACTCTGAGAATATGGGCCTGCCCTTCTCTTCCCTGCACTGTGGGGGGGTCCGTGGGGAGGCCAGCGGGAACCTCAGGATCACAAACCAAAGAATCATCATACCAATTCAAGAGCCTTCGGGCCTGGTAGAAGTGATGGTGACTGTGGAGCGCTGTCAGCTGTGGCGGTACAGCGTCTGGGACTGGGAGGAGCTAcaggagagagggctggggtgGGAGGTTGAGGGGGGGCAGCCGCCCcccgccctcctcctcctctacgtGTCAGACACCCAGGCAGCCGCTGTCCAAGAAGACCTGAGTGAGCTGTCAATCAAACAGGCCTTAGACCCACCCACTGgtCAAGCCAGTCCCTTTCTCTTgctcactctgtgtgaccctctggagggggtggagggggctCTCCTTCGCTCCATCCTCGACATCATCTGTCTCAACAACACCCCGCACGTCGACGCTACACGGCTCTGTGGCAGCTCTCCTGCCAACTGGGTTGTTGACCTCCACAGTCCCCTCCTGTCATTGGATGACAGTCTGGTGCTGGTCAGCAGAACTGGACTGGACCCGCAGCTACTCTCCCTACTGGGCCATAACAGTGCCAAGCCTGGGACAGAGCCAGACCAGGACCAAGAAccagaacaggacagagacacaccTGGGCTGGAGCTGGACCCTCTggacagagaggtggagggggagtcCCAGATGCTAccagacacagatacacagatggaggaggagcagagggagGGGAGTCCAGTCCAGCCCAGACCCGTGTACACAGTGTGTCACCACAGAACCAGAGGCTCCTACTCTGTGTCCCTGGGCCCCAAGCCTGGCTCCAACTGGACCCGGTACACACACCAGGGCCCCACACGCAGGTTGATCCAGTTTCCTCCACCGCCTTCCAAAGGAGGGATCACCGTGACAACAGAAGATCTGGAGTGCCTTGACAATGGCCAGTTCCTGAATGATGTCATCATCGATTTCTACCTCAAGTATCTGCTCCTGGAGAGGGCTCCACAGGATGTGGCTGATCGCTCTCATGTCTTCAGCAGCTTCTTCTACAAGCAGCTCACACGCAGAGACAACGCAAGTGAGGACAGCACCAGCATctcAGCACAGCAGCGGCGGCACCAGCGAGTGAAGACGTGGACACGACATGTGGACATCTTCAAGAAAGACTTCCTGTTTGTGCCTGTCAATCAGGAAGCCCACTGGTACCTGGTGGTGATCTGCTTCCCTGGCCTGGAGGAGCCCCAGTGTGAGGAGTGGCGCAGCCCAGCCTCGCGGAGGGGAACAGGGGGGGAGAAGCCAGGCAAGGCCCAGGCTGAAGAGGAGGCCTCCGGGTCTGAAAAGCTTAATGGTGTCACTGATGTTCCCCCTGGTCCCACCAACACTGACAACCAAGACAAACTGACACTTACAGAGAGTGTTGTCCAGGGTGACTCAGTACTCCAGCCCCCTCCTGGTCCTCCGGACTGCACTGAGAAGACCTGCCACAGAGAGAATGTCTGTAAAAGACCCTGCATTCTCATCATGGACTCCCTCAAGTTCTCCCTCCATGAGCGTGTCTTCAAACTCTTACGGGAgtACCTGCAGTCAGAGTGGGAGGTGCGTCGGGGCTCTGTGCGTGAGTTCAGTTCTGAGCAGATGAGAGGCTCCCACTGTAAAGTCCCTCTACAGGACAACAGCAGTGACTGCGGCCTATACCTGCTGCAATACGTTGAGAGTTTCCTGCAGGACCCCGTGGTGCACTTTGAGCTCCCCCTGCGCCTAGAACACTGGTTCCCACGGCAACAGGTGCGGAGGAAACGAGACGAAATCAGGGACCTGGTGCTGAACCTGTACAGACACCAGAGGGGCACGGTGGGTAGTATAGGAAACATGGGAAATGTAGGCAGTTAGGCACGGTAACCACCTTGGGAATCTGCTCATGCTGAGCAACCAGGAAATTGACATTTCAGCCAGTGATATGGAAATATGATTTCTTAGACAATAAGCGTATGTAGTTGTTTCACCGGCCAGCAGGGCCgttcaaacatacagtacatgcagatGTCTCATCATGTCAACAAGAAATTAGCCCCTAACATCAGATGTTGCTTTAATGACATAAATCCAACTAAGGATGGATATAAAATACTTGCTGTAGTAGCTGTTGAGTTGCTGTAGCTCAGGTTCTTGTTTGAAGTTGGTGCATTAAAGGGTCATTCCACAGAAATTCAACAGTTAAAACTGTTATTTTTTTACCCTTTCAGTAGAATGCCCCTTTAAAGAGTCTGTCCCCACTGCATCTTCTAGATAGAACCACATACCACCACTATAGCCTCATTTAACACAAGAGATCAGATTCAACAGGGTCTCCCTTTTATTCTTTTACCTGTTTTACGATGaattccccccctcccccatgtGATTCTATTGTAAATGTTATGTCAGTTTGATTTTTATATGTGGATTTTgttttaaaatgtacattttgatgaaaacctgttttgaatataaaatataataaatgCATTTGTAGTCGGAATTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049900 lncRNA downstream 17361 23315885 ~ 23316235 (-) True G1790931
TU2049895 lncRNA downstream 24302 23308853 ~ 23309294 (-) True G1790926
TU2049201 lncRNA downstream 81880 23251493 ~ 23251716 (-) True G1790320
TU2049200 lncRNA downstream 82520 23250788 ~ 23251076 (-) True G1790319
TU2049199 lncRNA downstream 83367 23249991 ~ 23250229 (-) True G1790318
TU2049930 lncRNA upstream 41673 23393394 ~ 23394736 (-) True G1790951
TU2049961 lncRNA upstream 113666 23465387 ~ 23465759 (-) True G1790982
TU2049962 lncRNA upstream 114416 23466137 ~ 23466405 (-) True G1790983
TU2049968 lncRNA upstream 118652 23470373 ~ 23470595 (-) True G1790989
TU2049969 lncRNA upstream 119363 23471084 ~ 23471411 (-) True G1790990
XM_036959545.1 mRNA downstream 6464 23298314 ~ 23327132 (-) True LOC110502001
XM_021579884.2 mRNA downstream 8859 23298314 ~ 23324737 (-) False LOC110502001
XM_036959546.1 mRNA downstream 97908 23197766 ~ 23235688 (-) False LOC110502006
XM_021579918.2 mRNA upstream 3207 23354928 ~ 23363406 (-) True LOC110502015
XM_036959539.1 mRNA upstream 16702 23368423 ~ 23460586 (-) False LOC110501997
XM_036959541.1 mRNA upstream 16702 23368423 ~ 23460586 (-) False LOC110501997
XM_036959540.1 mRNA upstream 16702 23368423 ~ 23460587 (-) False LOC110501997
XM_036959542.1 mRNA upstream 16702 23368423 ~ 23460589 (-) False LOC110501997
TU2049161 other downstream 164233 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 914098 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1512651 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2877613 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2987582 20345699 ~ 20346014 (-) True G1786832
TU2049906 other upstream 81273 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 975008 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1496870 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1505103 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1634238 24985959 ~ 24986268 (-) True G1792433

Expression Profile