RNA id: XM_021579918.2


Basic Information

Item Value
RNA id XM_021579918.2
length 1996
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110502015
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23354928 ~ 23363406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACCAATTCATACCCATCATGCATTGCTACCATGTTCGTGACAAGCGAGTCAGTTGATTGACGTTAGAGCAAGGAGAAAGATGTCGCTGGAAAATCGCCGAaggatggaggctgtattcaCCGTAGCGCTTATCTTCTGCTCAGCTTTTACGTCAGGCGTTCAGGGGGACAGCCTCACCATATTGCAGGCCCCTGAGTATGTGTCCTTCCAAAAGGGAGACTGGCCGATATCAGGGGAGAAGATTCCCGATATGGTGGCTCTAACTATGGGTTTCTCCGTCCAGGAGgatcTCTCCTGGCCAGGCCTCCGAGCAGGTCCTTTGTTCCAGCGTCCCAGGGCCAACGTGCTGGTGGTGGTGCGGGGGGTGGACAGCCTGGCCCTGCCCCAGAGTGTGGCCTCCTACCCCCTGGAGAATCCGGTGCCCTTCACCCTGGACAGTGTGGCTGAGACGGTTCACACTCTCTTTGCTGAGGACACTCCTGTGGTGCTCCAGCTGGCCCCTAGTGAGGAGAGGCTGTACATGCTGGGAAAGGCCAACGCTGTGTTTGAGGACCTGCCTGTGACCCTGCAGCAGATTCGTGCTCGTCTCTCCCAGGATGGCTCTGTGCTCGCCTCCCTGCCACTCAACTCCCTCAGCCGCAATGCTGAGgctgaTCTGCTCTTCCTGTCTGAGGTCCAGGTTCTACATGACATCACTGCCCTGCTGCAGAGACACAGGCACCTGGCCAAGGACCACTCCCCTGACCTGTACTCCCTGGAGCTGTCTGGCCTGGAGGAGCTGGGCCGCCGCTACGGACAGGACTCCTCTCAGTACCAAGACGCCACTGCCATTCTGGCCAATGTCCTACAGAAGTTTGGTGAGGACTTGTTTGGTCTTTATGGTGACAGCGCGGTGGTGGAGGTTGTCACAGTGAAGAACTTTGAGGTGCCACTTACCAGGAAATCTCGCTCAATCCTGGAGTCCAAACAAATTAGTAACCCTGGCAGTCCCTATAACCTGGCCTATAAGTATAACTTTGAGTATGCCGTGATCTTCAACATCGTGCTGTGGCTGATGATCATCCTTGCCCTGGCTGTTATCGTCATCTCATACAACCTGTGGAACATGGACCCAGGATATGACAGCATCATCTACAGGATGACCAATCAGAAGATCAGGTTGGACTAAGGTCTGCCCAGCAACACTCGAGCCCTCCTATTAGCCCTCTCCTAGTGAATCTTTGTTTTTCTTGTTTTATGTGAAAAATAAAGAAGTGGAGCTGAAGGTGTAGGCCTAATTCTAAATGGGTTGGATAGGTTTAAGCAATATGGTGAAAATAATGTATCTTAGCATAGTATAGGCCATGGTTGCACTAATTACAAACCAGATAGTGTATACCTATTCTACCTCTCAGCTATAGACAAGCTTCTAGTGGTTGGTTATGGACTTAGGAGTAGACATCAGAGTAGCAGTTGTTCAGGGAGAGGTAAAGGTCCTATCCAATATGAATGACATGTATAAGAGATGCACTTAATTAGTTAGCACCTTTGAGAAATTGCAGAGGTTAACTATACAGTAGCTGTAGTTGTGTAGTTTAATGCTGAGTTGTAACACTAGAGCTGTCTCTGAGGTCTAGTCCTGTACCTTCAACCCCACACTTCACATTGCTTATGAGTGTCCTCTTTTAGTAGGCGTCCTACATCCCTGGTGATTTCAAATgtcctgtttttatttttattgtaaaAAGTAAAGATTATTCTAATGCCCTGAAAGACTGAGAATTGACGTGTGTGATGTAAATGTTTGTCTCGCTATTTGAAACTGTTTTAAGTTAAAGTGAAATCTAGGTGTATATATTGAAGTTAGAAATGCAAATATCCTGAAGGAAACTGCTTTATTGGTATTGTGAGAAGGTCTGTAACATTCGCTGGCAGGTTGCAAAGGCGCCTTGCATGCATTTTGCGGTTGTGTGACTTTGACATTTGAATATGCAATAAATGAATTACCATCTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19514 ATP6AP2, PRR; renin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049900 lncRNA downstream 38693 23315885 ~ 23316235 (-) True G1790931
TU2049895 lncRNA downstream 45634 23308853 ~ 23309294 (-) True G1790926
TU2049201 lncRNA downstream 103212 23251493 ~ 23251716 (-) True G1790320
TU2049200 lncRNA downstream 103852 23250788 ~ 23251076 (-) True G1790319
TU2049199 lncRNA downstream 104699 23249991 ~ 23250229 (-) True G1790318
TU2049930 lncRNA upstream 29988 23393394 ~ 23394736 (-) True G1790951
TU2049961 lncRNA upstream 101981 23465387 ~ 23465759 (-) True G1790982
TU2049962 lncRNA upstream 102731 23466137 ~ 23466405 (-) True G1790983
TU2049968 lncRNA upstream 106967 23470373 ~ 23470595 (-) True G1790989
TU2049969 lncRNA upstream 107678 23471084 ~ 23471411 (-) True G1790990
XM_021579874.2 mRNA downstream 3207 23333596 ~ 23351721 (-) False LOC110502000
XM_021579875.2 mRNA downstream 3207 23333596 ~ 23351721 (-) False LOC110502000
XM_021579876.2 mRNA downstream 3207 23333596 ~ 23351721 (-) False LOC110502000
XM_021579878.2 mRNA downstream 3207 23333596 ~ 23351721 (-) False LOC110502000
XM_021579879.2 mRNA downstream 3207 23333596 ~ 23351721 (-) True LOC110502000
XM_036959539.1 mRNA upstream 5017 23368423 ~ 23460586 (-) False LOC110501997
XM_036959541.1 mRNA upstream 5017 23368423 ~ 23460586 (-) False LOC110501997
XM_036959540.1 mRNA upstream 5017 23368423 ~ 23460587 (-) False LOC110501997
XM_036959542.1 mRNA upstream 5017 23368423 ~ 23460589 (-) False LOC110501997
XM_036959564.1 mRNA upstream 113532 23476938 ~ 23578990 (-) False si:dkey-100n23.5
TU2049161 other downstream 185565 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 935430 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1533983 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2898945 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 3008914 20345699 ~ 20346014 (-) True G1786832
TU2049906 other upstream 69588 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 963323 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1485185 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1493418 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1622553 24985959 ~ 24986268 (-) True G1792433

Expression Profile