RNA id: XM_036959539.1


Basic Information

Item Value
RNA id XM_036959539.1
length 8298
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110501997
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23368423 ~ 23460589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgagcCTCCCGTTAAGCTACGGCGTCATCCCCCAGTCAATTTCTACCCttcatttatttttttccccttttaCCGTTCACTGccaccctccccctcttctcgcTAGTGTTTTGTTTTACACGCCCGCCCCAGCGCGCGGTGTATGTGCAGGAGGTTTATGGTAATTGCGGTCTCCCGACTGGCCTTCTGGGTAGAGTCTGCGCGATTGAGAGAGCCGCTCGCGGTACAGCAATCCACTCCGCTCCGCTTGCCCTGTTCGGCGTCTTCAGCAACTCGGCACGAAAGGAGCTACCAGGAACTTTCAGAGAAAAACTACGGAAAGATATACATTCCCGACCTTTTTTCCCAATATCGACGGAGATAAATGGTATATTTTCGGAATAGACTGGGATTGACGAGATTGGAAGTAAGAGCTTTGAAACGGCATGCTCTGATAAAACCCAACATGGCGCTGCGAGATACGACCGAGCTGAATGCATTTCTGGAGTCCGCGGACCTTACCACCTGTATCCTTGCGCACTGCTAAACTGTACGTTACCAGCCACTGGGACGTTCTATAAAGGATGATTGGAAACCTTATTTCTAGGGATTTGTCACACTAAGTCGATTTTGACGGTTTTTCTCTCGTCTGTAAACATATTGACATTTCACTGTGAAAAAGTGTTGTGCGAGTGTAAAGGAAACACTATAACATATGGTTTAATTGACTGACAAGTAAATAACCCGTTAGACACACTTCTGAATATTTATATCCAACGGTTTGAATATTCACTGGCCCGAGATGTCTATGATTTTATAACGGAATCGTAACCTCCACGCACGAATATTTGCTCAGAGCCGTGAACAACTTGGAAAAACGGGAAAAGGAAAGTTGGAAATAGAGGATATTGACCAGAGCGCTGGTCGTTTGGAGGTGTTTTAAGATGGACTGTCCCATGAGGGGATGACATGCTCTCTGCTACACAGATGTACGGAACGGTTCCCCCATGGATGAGTCACGAGAGAGCCCAAATGTATGGGATGGTCATGGAGGAGAGGAGAGTACCTGTTAGTGATGCGGGGACCCAGAGAAACCTGGATTTAAGAGAAGGCAACCACATCACACAAAGCATGGTGGATGCCAGGCTAACGCCCCTTGCCGCCATGGGGCTGGACCGCAATGCCTTGATGCGGGACGGCCTCCGCCTGCATGGCAGCGTAGTCTACCCAGGGATCCGAGCGCTGTCAGCCGAGAAGCCCCACGAGGGGTCCACCACCCTCCCCCTCGGCTACAACCGGGACGGCCTTCCAGACCTCCTCTACAAGCCTGACGTTTCCATGGACCGGAGCAAGCCTACCAATGGCTACCTGGACCTGTACAAGAGTCCTCCACCAAGCCTCCATAGGGGACCAGAAGGGCTGGACAGGAGAGGTGTGGGACCTGGGGGGGAGAAGCCCTCAGAGCTGGGTCTGGGGGGTGCTGGTGCAGGAGCAGGCGGGTACCTGCGTCTGCCCTGGGGGCTGAGTCGGGGGCTGTACCCCGAGGCGGGCATCTACCCCTATATGGACTCTTCCAAGTATGCGGCCCTCAGCATGTACAAGGCCCAGTTCCTCAACCAGCCCAGCCCCTACCTGCCCCAGCACCTGGCCTACCAGTCCCTCTGTGCCTCCCAGGGGGGGAACATGAACCCTGCTGCTGCCTCCGCCGCCGAGAGGCTCTACTACATGCCCCCCTACCCCCcgtcccccatctcctcccccctgGTGGGGTCTCCCATGAGGATCCCAGCGGTGTCGGTGGCCCCCACCTCCATTGTGCACTGCCAGGAGAAAGGATTGAGTGTCGGGTCTCGTGTCCACCACGAGGGGTCTCCGTTTGGGCAGCAGCTTCACCAGCCACCCCCTCCGCCCCAGCACCTTCTAcccccccacacagacagagacagagacagatcccCCAGCAAAAGCAATAAGCCCAGTAGACCCCCCTCCAACAAAGGAGCCAGtaacagcagtggtagtagtagtagtagtagtggtggtagcagtGGTGGGAGTAATACTAATAGTAGTAGCCTTCCTATTGATTCCTCCCCTCGCGCCTCTTCTCGCCTCCCCCAGCCTgctcctcccctgcctccccctcacaTAGACAACACCATAGACCTACAGAGGGCAGTCTCTAGAATAGTACCATTATCTTCCTCCTCttgttcttcttcctcttcccagaCGATACCTCACTCGTTCTATGTGAGCAGCATGGCTTCAGAGCACCCATCCCCTGCCCGGCCCAGCCCCCACAAACCCAGACCCAGAGATGGGGTGTCGGATCACAGGGCTGGGGGATGTGAGAAGAGACCCAGTCAGTGCCCTTCTAAACCATCCTCTGAGCGGCCAGCCCCACTGAACCAGCCCCTGACTACCAAAGACCCAGCAGACCCAAAGCCTCTCGACCTCTCTGGAAGATGGTTGGAGTTAGGCCTGTCTCCTAACAGCTTCCCTGTGAAGATGGAGGCTCTGGGGTCCCCAGGGCCTCGGTACGGACCTCTCCCCAGCCGGGAGCTCCTGAAagagaccctctctctctcacccccctccctaccctcccactccctctcagTGGTCAGCAGCACATCCTCTAAAGCCCCAGAGAGGCCGGAGATGATCAGCACTTTGCACTCCTCCTGGGTGGTGCCCACCCTTACACCCACCTACACCATTGTGTCCACCCAcgcacacccccaccccccagccCTGTCCCCATCCCCCAGGCCCAGCCCAGACACCCAAGGGAATGGCTCCTCTCCATCTGTCATCAAACACAAGGCTCTGGAGAGAGTCCTGCCCCAGCAACGCAGTCCATCCTGCCCCAGGGTAGGAGAGACAAATACTACCCCAATACCTTCCAATCTCAATCCCCCCTCCACAATACCCTTGTCCCCCAAACCCAATAATGATTGGCCCAAACACAGCCCCAGCCCATCAGAAAGTTCCCCCATGGCCAGCCATCATAGGAACTCCACAGAGAAGCCCCCCAAAGCCACCAAGAGGGCTGAGACATCCCGGGAGGTGTCTCCATATAATAAACGTCAGTGTCTAGAGAATTCCAATGGGCACCCACCCAGCCATCTCTACCTGCCCCAGAGCGAGGCCTACCTACCTCACAGCATGGTGTATGCCAACCGATACCTGCACTACTCTGTACCCGACGGCATggccctccactctctccctctgccaggGAAGGGCCCTGCCTACCCTCCCCCCATCCTGCTTGGCAGTAACAGCCTTTACCCCTCCCACCTGGCAGCCAAACACCCCTTACCATACCACAGCTACCCTGGGGAGTACCTCACGTACAACTCCCAGGAGATGGCCCACCctctgatgcacacacacacagactctaaaGCCCTGGAGCGGGCAGATCAGCGGCCCAAGTCCCGTGGCCAGGGCCAGGACAAACCTAGGGGACTCAAAGAGGATTTTGATGGGTCCCACAGGGGCCGGAGTGATGTGGAGACAGGGGAGGGGTCCCATGTGAAGCGCAATAAAGATGCAGGGGAGTGGGGAGGGAGCCAGCCCagacccctctcctcctccagcaccAGTATCTCTTCCAAAGATAGAATCGTCTGCATTGACCTCGTACACTCCGACACAGATGGAGAGTCCACGCCGGCCGCCAACAAGCCGCCACTCCCTGTCATTGTTCCCATCACCAGGGGCAACCAACACCTGTGTGGCCATGGCGACCAAAGCATGAGGGAAGTGGAGCGAGAGCCAGAACACCAactgcatcatcatcatcatcttcatcaccaCCCCAGCCCAAGCTCCACCCTGAGAAcctcccacacagacagacaaccagagACCCTCTGTATGAGACCCAGGCCCCTCCAGGAGACGGGCTGTACGGGTTTGGCCTCTAGCCCACCTCAGGGCTCCCCAGGACTGGTTACTCGGGCCGAGGAGAGCCGTGAGGGCCAGAGCCCTTCCTCAGACCCAAGGGACCAGGGGGAGCAGGGCAAAAGCACCCTGCGCTGTGCCCGCACATCTGGGGACCGCAAGACAAGAGACCGGACTCTTGGCGATTGTGACCGCACCGCAGTAGACCGTACAACTGGCGATAGTGGCCGCATGCCTGGCGACCGCACgtctagagaggagagagaagagatggacagACGATCCTCCTCCCACCCCATCCATCGCTACATGGACCtggggaaggaaagagaaagagaaggagggagcgtTGAAGACACAGAGGAGTCacatggagagggggatgaggacgAAGAGGGTGGACGAAGAGGCTCACGGAGGACCAGTCTGACCAAGAGGATCGCTAACTCTTCAGGCTACGTCGGCGACCGCATCAAATGTGTCACAACCGAGCTGTATGCAGACTCTAGCAAGCTGAGTCGGGAACAGCGCGCCCTGCAGATGGAAGTCATATCACGAGAGGAGAGTAATATAAGTCGCCCTGCAGCTAACTGGGAGcggGCGATGATGCGGTTCTCGGAGCTGGAGCTGAAGGAGAAGGAGtgcgggggtgtgtgtgtgtctgcgtcggCAGCGGTAGCAGGACAGGAGTTGGCAGACCGCcagcggagagaaagagagtgggaacACTGCCAACACACcgccaggcagggagagagggaggGTGGAAGGCAGGACTATGGGAACAACAGAGTCCCAGTCCTCCAGAGGAGTGGGGGCCAGAGGGAGAGCCTGTACACAGGGCAGGAGGCCTGGGAGGGGGCTAGAGATGGTGCCAGAGAGGGTGAGGGTTGGCGATGTTCACCCCCAGTCCTGGCACTGGCAGACCGGCACCTTCAGGAGAAGGGTGGGCAGGGCATGGTACCCattaggaaacacacacacagcctacagaagggagaggaggaaggagaaaagAGCTCAGAGAAGGCCAGAATGACTTCAGATGCGTGCGTGCTGTGGGGCAGTGAGCAACCTACGGCTCCTACtactaatgatgatgatgatgatgaagaggtgAGGAAGCTGAAGGTGTGTATCGAGCTGAAGGGGCTCCGCCTCCGCAAGCCCACCTCTTCCTCCCCCGAGAGGCCAGAGGtcaaagaggagaggacatggttaTCACATCACAGCCCCTCCTTCCTGCCCCGGACCCTCCCCCCGACCCCAACCTGGAACCCAGCCCATGCTCCGCCCCCTCGGGACAGGAAGTTCAAGGTTGATTCGGAAGTGAAACCTCTGTCACAGAAGCCAGAGATCACAAAGAGCTGGGCCAGAGAGATGCTGGCTAATGGAGACGCTAAACGagttggACTGCTCCCTTCAACCCAGCAGAGGGACAGATCTGCCCCCCAGGGGCCCCTCGTGGGGCAAGGATGTGACTGGGGATCCAAGGAGCctaggagaggagggctgggggtgAAAACTGAGGGTCAGTGCCTCCCCCCCTCAGCCCCTGAGCCCCCCACCAAAGACACTGCCTCTCTCAAGCCCCGTCGTCATAGCGACACGGACAAACCCAAGGGCAAGCGGCCGTGCAAGACAAAACACATCAgccaaagagagagggagcggaggAGAGAGCTGCTGAACGGCGGCAACAACCAGCATGGAAGCACTGATCTGGGAGCAGCTTTGGAGGACAAGgtcAGTGAGCAGTGTGCTCGGAGGAAGAGACCCTCTTCGCCCCTCCATTACCTCGGTTCTCCGGTCAAGCCCTGTTCCCGCTCAACGCGGCCCCCTTCCGTACCCCCTCAGGTGAACGGCTCTGGGACTGTCCCACCGGATGGAGCAGGGGTGAGGAGGGCCCCGCCTGCTGAGCCTCCCGTGGTGCGGCCCATCCCCCCAGAGGCGCGGAGACTAATTGTCAATAAGAACGCTGGAGAGACGCTGTTACAGAGAGCAGCACGGCTCGGATACGAGGAGGTGGTGCTGTACTGTGTGGAGAACCGTGTGTGTGAGGTGAACCACAGGGACTACGCAGGCTACTGTGCCCTCCACGAGGCCTGCGCCCGCGGCTGGATCTCTATAGtcatacacctgctggagcatggGGCCGACATCAACTGCAGCGCACAGGATGGCACCAGgcctCTGCATGACGCGGTGGAGAATGACCATCTGGACGTAGTGCGTGTGTTGCTGTCCTACGGGGCTGACCCTACTCTAGCCACCTACTCCGGCCGCGGTCTGCTCAAGATGACCCACAGCGACAGCATGGAGCGATTCCTCACTGATTATTTTGCTGACCTGCAGGGCCGCTCTAATGATGACCCAGAAATCTATTGGGAATTCTATGGCAGCGCTGTGTGTGagtCGTTAGAGGAGGGCAATGTGTGTGACGTACTGGCGGACCCCCCAGGGCCGGAGGACAAGGACAGGAGGGAGCTCTTTGAGTTTGAGTTCTCCGACcaacctctcctcccctgctaCAACATTCAGGTGTCCCTGTCGCAGGGGCCCAGGAACTGGCTTCTCCTCTCAGATGTTCTCCGGCGGCTGCGAATGTCTGCCCGTTCCTTCCGCTCCTCCTTCCCCCACATGGAGGTGGTGACGATGGCCGAGGCAGAGTTTTACCGCCAGGCATCTCTCTCCCAGCTCTTCTCCTGCCCAGACGAGCTGGAGGGCTTCCAGCCTGACAGCAAGGAGCTGCTGGACCTGGTGGAGGGGAGTGCTGAACTGGCCGCTCTGCTGGGTTCTAATCTAGAGTGCCTCGACGACCGCTGGGACGAACCCCCGGAGGCTAACGCTAATGTTGATGAAAAGGCTAATGTCAATGGGAAGATTAGGGCTATGGCTAATGCTAACAGTAACGTTAACGCTAAGGTCAATGGGAACATTAGGGCTATGGCTAAAGGTAACATTAGCGCTAAGACTAATGGTAGCACTCATGTTAAAGCTAAGGCTAACGCTAACAGAAGGTCGTGACCTGAACTTTGACCCTGAATTCTGAATCCCTGCTCTACAGTGGGGGGTTAAAATGGGTGAATGAATAAGACCACCGCCCTGAGATCTGAGATTGAACTCCTGCTCTGTACCTGTGTGCTGGACAGACAGAGCAGCAGAGACTGAATATGTATGTCCATCAAGCGAAGATGGAGAGACGACTGTAACTTAACAATGgtcttattttttataaatgtattaatatatgtataaatatataaatatatctgGAAATGTTTTCTCAATTTCTATCCTTCAAAGTGTGGTTGTGTTGTCATGAATGAAAGGTTGTGTACAGAGGCGTCATGCCCATGTCACAGAGGCACGTTCCCTCTCAGATTTGTCCTGTTGTGAAAAAATAAATCCAAAttgcaatatattttttttgtattattatatattttttatgtaacACTAGCCACTTGGTTGTTTTATGAAGTTGGTTTTAGCTAGCCCAAATAGGTTCCCAATCTACCAACCTTATTACTCACTAACTAGAAGCcatagctagcttgtctaactatttTAGCTAGCATGCCTGCTGGCAccgttggtagactttagaaaagcaaacaataactaaatgtactgaataagactcacattcctttcaatcttttaacAAGATTTAatcagagatgcagagaagcatataTAGTTTCTTTGAAAAAAGAACCGCCAGTCAGGAGGATATGCCGcaaaaaaatatacttttttttagtctttatttaaaaaaaagactgtttcgggtgtttgaaaaatgcttcATTCTCCAACTTCAGGATAGGGGGGCCTAGCCCACCTCCAAACCAACCCCCAACCAATCCTCACTcactttgtgccccctcagatatttggggtgcatgacgcccctgtttgtgtgtgtacagtatgtgtgttaaacagtacattatgtgtgtgtgtcagtttatacggcagtgtgtgtacagtctgagcactgaggCTGCGCTTTTGAATGTGACATTTTGTGTTGATAGGAAGCACACGTTGACGATCTCTTCTAATAGTTTTTTGGTCTGCTCAGACAGACTTACCGCCCTCTTCACCCTCAGGGGCTGTTTTGAACCTGTGTTCAATCTGCTTCTCATTTAGTCTCTAAGTTCACTTGCTAAACTGCAGAGAGATGTGTTTTTGTATAATAGGAACGTTTTAAAGATGATGAGAAGATATTCGGCATCTTGTACATAACAGGGTGGCGATTGCAGTACAGTATCAATTTTACTGTTTGATGGGTCTTTTTTTTTGGTTTCAACTTTGCAATTAAAATATCtcatttgtatttatattttacaaaaaaaattgctttAAAATAAATCTTAAAAACTGCAAGAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049900 lncRNA downstream 52188 23315885 ~ 23316235 (-) True G1790931
TU2049895 lncRNA downstream 59129 23308853 ~ 23309294 (-) True G1790926
TU2049201 lncRNA downstream 116707 23251493 ~ 23251716 (-) True G1790320
TU2049200 lncRNA downstream 117347 23250788 ~ 23251076 (-) True G1790319
TU2049199 lncRNA downstream 118194 23249991 ~ 23250229 (-) True G1790318
TU2049961 lncRNA upstream 4801 23465387 ~ 23465759 (-) True G1790982
TU2049962 lncRNA upstream 5551 23466137 ~ 23466405 (-) True G1790983
TU2049968 lncRNA upstream 9787 23470373 ~ 23470595 (-) True G1790989
TU2049969 lncRNA upstream 10498 23471084 ~ 23471411 (-) True G1790990
TU2049971 lncRNA upstream 11674 23472260 ~ 23472510 (-) True G1790992
XM_021579918.2 mRNA downstream 5017 23354928 ~ 23363406 (-) True LOC110502015
XM_021579874.2 mRNA downstream 16702 23333596 ~ 23351721 (-) False LOC110502000
XM_036959564.1 mRNA upstream 16352 23476938 ~ 23578990 (-) False si:dkey-100n23.5
XM_036959563.1 mRNA upstream 16352 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959566.1 mRNA upstream 16384 23476970 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959565.1 mRNA upstream 16384 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_021579938.2 mRNA upstream 122861 23583447 ~ 23585473 (-) True LOC110502029
TU2049161 other downstream 199060 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 948925 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1547478 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2912440 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 3022409 20345699 ~ 20346014 (-) True G1786832
TU2050435 other upstream 866143 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1388005 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1396238 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1525373 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 2249987 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile