RNA id: XM_036959564.1



Basic Information


Item Value
RNA id XM_036959564.1
length 1182
RNA type mRNA
GC content 0.51
exon number 13
gene id si:dkey-100n23.5
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23476938 ~ 23578992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTAGCCgtgcactgtagctagctaggaAGTTGATGTCATCAAATTTCACATGATGTGTAGTGACGTCCAAACATCAAAACATTGCTAGCAAATTGTAAAAAGAAATGGATAGTAACAATATAATTCCATTAAATAACGACAGTAGACGCTGTATTTTCTTTAATACAGATTCTGACGACTATCGATGTGTGGTGATTCTCACAGTGAAGCGAGCCACAGGCACCTTCTCACTGATAGGATGCTTTTTCATGCTGTTTGTAATCTGGCTTCTCCGCCGGTATCACTCCTTGGCCCagaaGATGATTTGCAGTCTGACAGTTGCGGCCTTCTTTGACAGTGTAGCGTATGTCATCGGTGATACCCATCCAGAGGGGAGTCTGTGTAACTTCCAGGCCTGGTGGCTCACTTATTTTGACTGGAGTGCCTTGGCCTGGGTGTGCCTGATCACAGTGAACCTCTACCTTAACCTGGTCAAAGAGATGAGCACCAGCCGCTATGAGCTACTGTACCACCTGATGGCCTGGGGGGTGCCCCTGGTGATGGCCTCCCTGCCCCTGTTCAGTGGATACTACGGCCCAGCAGGAGCCTGGTGctggATCACAGGCAACCACGTAGCTTGGAGATTTGGGATATGGTACGTCCCACTCTTCACCCTCATCTTCCTCATGATCTGCTGTTACGCCAGAATAATCTACGTAGCCAATGAGAGGATGCAGTCGTGGTTTGGCACCTTCaacccagagagggagaggagaaaggtgTCTTTGGCTGAGGAGATAAAGCCGTTGAAGTGGTATCCATCCGTTTATCTCCTGGtgtctctgttccccctcatcaacagGCTCCATAATGTGTTCTACCCCCAGGATCCAGTGTTCTCTCTTACTTTGCTCCATGTCCTTTCAGCCCCTCTCCATGGCTTGGCCAACGCATTCGTCTTTGGCCTGGACAGAGACACCTGGAGCCAGCTCAGTCCTACAGGCATACAGTTGGCGCTGCAATCTCGGCTGTGTGACAGGACGCGTATCAGGGAGTACCATCCTGGGGCGGTGCACTACACACAGGCTGAGCTGGGGGACTTCAGTGACGAGGATGATGATGACACCAACGTCCTTTTCTACTCCCCTGACATGACCCTGAAAGACAGaggaccctgagagagagagagagagagagagaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2049901 lncRNA downstream 928 23474836 ~ 23476010 (-) True G1790932
TU2049905 lncRNA downstream 2173 23472645 ~ 23474765 (-) True G1790934
TU2049971 lncRNA downstream 4428 23472260 ~ 23472510 (-) True G1790992
TU2049969 lncRNA downstream 5527 23471084 ~ 23471411 (-) True G1790990
TU2049968 lncRNA downstream 6343 23470373 ~ 23470595 (-) True G1790989
TU2050028 lncRNA upstream 16132 23595122 ~ 23595338 (-) True G1791047
TU2050044 lncRNA upstream 41590 23620580 ~ 23620880 (-) True G1791063
TU2050049 lncRNA upstream 47720 23626710 ~ 23627228 (-) True G1791068
TU2050062 lncRNA upstream 73732 23652722 ~ 23653454 (-) True G1791081
TU2050064 lncRNA upstream 76265 23655255 ~ 23655455 (-) True G1791083
XM_036959542.1 mRNA downstream 16349 23368423 ~ 23460589 (-) False LOC110501997
XM_036959540.1 mRNA downstream 16351 23368423 ~ 23460587 (-) False LOC110501997
XM_036959539.1 mRNA downstream 16352 23368423 ~ 23460586 (-) False LOC110501997
XM_036959541.1 mRNA downstream 16352 23368423 ~ 23460586 (-) False LOC110501997
XM_021579918.2 mRNA downstream 113532 23354928 ~ 23363406 (-) True LOC110502015
XM_021579938.2 mRNA upstream 4457 23583447 ~ 23585473 (-) True LOC110502029
XM_021579927.2 mRNA upstream 28440 23607430 ~ 23618048 (-) True LOC110502021
XM_036959554.1 mRNA upstream 159616 23738606 ~ 23763120 (-) True LOC110502018
XM_036959572.1 mRNA upstream 197074 23776064 ~ 23785592 (-) False LOC110502024
XM_036959573.1 mRNA upstream 197074 23776064 ~ 23785691 (-) False LOC110502024
TU2049906 other downstream 16578 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 307575 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1057440 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1655993 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3020955 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 747739 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1269601 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1277834 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1406969 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 2131583 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile