RNA id: XM_021579938.2


Basic Information

Item Value
RNA id XM_021579938.2
length 2027
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110502029
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23583447 ~ 23585473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTCATGTTTGCATTGGAATACATGAGAGCAAAATATAGGCCAATGTGAATGAAGTTTGAAATCGATTGCAATGTAAACtataattatttttttgtgtgcttgGTGTGTGAATGTTTTGAGAAAGCTCACTTATAAACCATTGTGCTGTGTTTGAGTGGCTGATGCGCAACACAGGCTGACAATTGCGCGGACATAGAGCCTCCTATCATTTGGTTTGCAGAAGATGCATTCATTGCTTTCTTACTGGGCACTGTGCAAGGGCCGGATAGTAGGCATATCGCTACTGGGAGGCCAATCCCCTTCATGCAAACTATGccaacatgtttttttctgtctgtgtACTAGCTCATTGGAGTCCGATTACTGTAGAGGTAGAATAATCCTGACAAACAGGTTCTGGGCACGCCCTTGGACACGAATCCACCTGCTCTATAAAGATCCGACCGGGGACCAGTAAGAGTCAGAACAGAAACGAAAAGAAGAAGGAATAGGCAAAAGAAGAAACGAGAACAACTGCCAAACTCTCTTCATAGCTCTGTTTAATAATTTAATACAAAAGGACAAGCCGCTTTCCAAAGCCGATTAGAAAGTAGAAGAAACGAACTATCCAGCTCTGGTTGACAGATATACATTTAATTTATAAAATAAGTTCAAGAATCAACAACAGTCGCCAAGATGATGCAGATCTCAGAATCCCACCTGCAGAAGAACTCCCTGTTCAACTCCATGAACCGCTTCATCGGTGCCGTCAACAACATGGACCAGACGGTAATGGTGCCCAGCCTGCTGCGGGACGTCCCCcttgaagaggagagggagatggccGCCCTGAAAAGCTCGGGAAACAGCGACATCGAGGACGGGGACATGTACAGCTACTACCAGCTGCTCAAGTCTATCCGTTGCGACATCGAGTGGGGAGTGATGCGCGCCGAGGAAGCCAAGAAGCGAAAGGAGAGCCGTGCTTCCATCTCGCGGATGGATTCAGCGGAGGAAGATTCTGAGGTGTCGTCCGAGGAAGACGAGGATAACCTGCAGAAGCAGTTCCAGTTCCACATGACGGGGCTCCACGGGGTGCTGTCCAAGCTGACGCAACAGGCCAACACCCTGACCAACCGCTACAAGCAGGAGATCGGCATTGGATGCTACTAAAATGCAGCGCAACGATGATCCCGGATGATCGATTCTCATTCCCTGGTGATCGATTGTGTATTATTTAGCGGGAATGAGGTGAACTGAACTGAATAGTCTATAACTGATGAAATTCCTTTGAATGGATGGAGATAGAAAGAAAAtaagagagacagaaataaaCATTTCTGCTCTCTATATGTGGTATTATTTGACCTTTGTGGTATATTGTGTCGATCCATAGTAATGTTGTGGTTGACCTGCTATGTGGTATATCCGGGTTCCACAACACCTGTTTGCACTCTGATTTTTTTACCACCATGTCTATGTTTTATGCACGGTGTTCAATGGCGCCCCATGCCTTCAGCTCAAGTGACACAGATAATACAtatgtatacatttatttaataTTGATGTATTTAACTTGTTACCTCGCACTGTATGTTTGAGAGCTGTATATTTCAAGGTTGAAGAAGTGCATGACCTCAGAGACATTTGGCTATATTTTTTAACTTCCCAGTAAGGGGAAATGCTCATAGGATTTAGCATGTCTAATATTGCCAGTGTGTCAAATAGTCTGTACAGGTCTTGTATATTTTTCCTTATTGTTATGTTTCTTTATTATGTGCTTAGCTAAATGGAGGAGGCTTGAGAGATTCTTGCCTATGATCCCATTGCTGCCCTATATGACCAATGAACTGAAATCAACCGATGGTTCTTCTGCATAGAGAATAATGAAGGATTCCAAGAGGTCATGTTAATATGTTGCTGTTGCCATGGTATTTATGGAGAGGTGAAACTCCATAAGCCATTGTTTTTGTATGTACTATATTATGTTTTTGTATTGAAGATTCTGTATTTGTACTGAGAATTAAACTTTTTTATAAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049992 lncRNA downstream 15668 23503786 ~ 23567779 (-) True G1791013
TU2050007 lncRNA downstream 48281 23534589 ~ 23535166 (-) False G1791027
TU2050008 lncRNA downstream 48281 23534589 ~ 23535166 (-) True G1791027
TU2049901 lncRNA downstream 107437 23474836 ~ 23476010 (-) True G1790932
TU2049905 lncRNA downstream 108682 23472645 ~ 23474765 (-) True G1790934
TU2050028 lncRNA upstream 9649 23595122 ~ 23595338 (-) True G1791047
TU2050044 lncRNA upstream 35107 23620580 ~ 23620880 (-) True G1791063
TU2050049 lncRNA upstream 41237 23626710 ~ 23627228 (-) True G1791068
TU2050062 lncRNA upstream 67249 23652722 ~ 23653454 (-) True G1791081
TU2050064 lncRNA upstream 69782 23655255 ~ 23655455 (-) True G1791083
XM_036959565.1 mRNA downstream 4455 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_036959563.1 mRNA downstream 4456 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959566.1 mRNA downstream 4456 23476970 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959564.1 mRNA downstream 4457 23476938 ~ 23578990 (-) False si:dkey-100n23.5
XM_036959542.1 mRNA downstream 122858 23368423 ~ 23460589 (-) False LOC110501997
XM_021579927.2 mRNA upstream 21957 23607430 ~ 23618048 (-) True LOC110502021
XM_036959554.1 mRNA upstream 153133 23738606 ~ 23763120 (-) True LOC110502018
XM_036959572.1 mRNA upstream 190591 23776064 ~ 23785592 (-) False LOC110502024
XM_036959573.1 mRNA upstream 190591 23776064 ~ 23785691 (-) False LOC110502024
XM_036959570.1 mRNA upstream 190591 23776064 ~ 23788612 (-) False LOC110502024
TU2049906 other downstream 123087 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 414084 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1163949 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1762502 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3127464 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 741256 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1263118 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1271351 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1400486 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 2125100 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile