RNA id: XM_021579927.2


Basic Information

Item Value
RNA id XM_021579927.2
length 2033
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110502021
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23607430 ~ 23618048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGTCCTCCAGCGGAGAGTCATGGTAGCGCAAGGTTTGCAGAAACCTCCTTTTCAGTTTACTGTGGTATGGCATTGGGCATAATGGAGACCAAACCAGTGATAACCTTTCTCAAAACCCTCCTCATCGTTTACTCCTTCGTATTTTGGATCACAGGAGCGATCCTCTTGGCAGTGGGAGTATGGGGGAAGTTTATGCTGGGCCCTTATATCTCTCTGATAGCTGAGAACACCACCAATGCTCCATACGTCCTCATCGGCACTGGGACTGTTATCATCGTCTTCGGCCTGTTCGGATGCTTCGCCACCTGCAGGGGGAGCCCATGGATGCTCAAACtgtATGCAATGTTCTTGTCCCTGGTGTTCCTAGCTGAGTTGGTGGCTGGGATCTCTGGTTTTGTTTTTCGTCACGAGATAAAGGGAACCTTCCTGAGGACGTATACTGACGCGGTGTTGAACTATGATGCTGAGGATGAGAAGAGCCTGGTTGTGGACAACGTCCAAAGCAGCctgCGTTGCTGTGGGGTGTACAACTACACCAGCTGGTTGGGCAGTGTGTACTACCCTGCTAACGGCTTTCCCCTGAGCTGCTGCTCCAACTCCTCTGACTGCAACCCACAGGACCTCCGCAACACCACCATAAACCACACCAAAATCaaccagcagGGCTGTTATGAACTGGTCACCTCCTTCCTCGAGATCAACATGGCCATCATTGCAGGAGTGACTTTTGGCATCGCCTTCTCACAGttGATTGGCATGTTGCTGGCATGTTGTCTGTCCAGGATCATTACAGCTAATCAGTATGAGATGGTGTAGCTGGGAGAGCAGggagatgaagaggagagggtgAACAGCATCTTGGTAGACTGGGACAGAAGATCCCCACAACACTAGCACATTGCAtcactaaacccccccccccccccccccctctctcactttctctcactttctctcactttctctcccctctccccctctctctctcacttccccccccccctctctctctctcattattgtAACTTATTGTAAAGAAACACCATTCCTTAATGCTACTGTGCCATGAGCTTCTCTCAGTACCTTAAACTCCTCCACTGAATGACTCTGCTGGTAAAAGTTGCAAGTaagcactgatctaggatcagcttaccctccccAACACAAGATTGACCTTGGACCAGCATCTAGGGGCAACGTCCTCCTACTCCATATGAGCTTAGCAGTCTCTGACACTGTGGAGAAGTTTCCCTGAggcacaggtctaggatcagctcaCCCCACCCTTGATGCTAACTTTAACCATTAAGATAATGAATGAATATCTGACCCTGCATTAGtgctcatcatcctcatcatccttCTCCTTAGTAGTCTTTGACCCCTGTGTCTCCTTGTCCTCTCACACTTCCCCCTTGTGGTCTGGCATGCTCCATATAGGCCCTAGCATCTCCAAAGCGATGCACATATTTGAATAGACATTACATTATTAACCcacataaatatatacagtagccGACATACTGTATTTTCATGATGTTCCTAATCACTGTAAATACCTAAACTTCAGACATTTAGAGAAGATATGTTGATGAAACATTGAGAGAGCATTTAGAGCTAACTTTAGCCTTTCATTTGCATCTTTGTTTTTTTGCTGCTACATGGATGATATCTGACTATTGTGTCCATATCTATGGCATTAGATAACAATGAACTGTGCAATTGATTTGGTCTGTGGATGTGTAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtgcAGTTAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtgcAGTTAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtggagttAAACGTGGCTTACtctggctggtgggaggagctataggaggactggctcattgtaatggctggagtggag

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06571 TSPAN7, TM4SF2, MXS1, CD231; tetraspanin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050028 lncRNA downstream 12092 23595122 ~ 23595338 (-) True G1791047
TU2049992 lncRNA downstream 39651 23503786 ~ 23567779 (-) True G1791013
TU2050007 lncRNA downstream 72264 23534589 ~ 23535166 (-) False G1791027
TU2050008 lncRNA downstream 72264 23534589 ~ 23535166 (-) True G1791027
TU2049901 lncRNA downstream 131420 23474836 ~ 23476010 (-) True G1790932
TU2050044 lncRNA upstream 2532 23620580 ~ 23620880 (-) True G1791063
TU2050049 lncRNA upstream 8662 23626710 ~ 23627228 (-) True G1791068
TU2050062 lncRNA upstream 34674 23652722 ~ 23653454 (-) True G1791081
TU2050064 lncRNA upstream 37207 23655255 ~ 23655455 (-) True G1791083
TU2050065 lncRNA upstream 38223 23656271 ~ 23656499 (-) True G1791084
XM_021579938.2 mRNA downstream 21957 23583447 ~ 23585473 (-) True LOC110502029
XM_036959565.1 mRNA downstream 28438 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_036959563.1 mRNA downstream 28439 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959566.1 mRNA downstream 28439 23476970 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959564.1 mRNA downstream 28440 23476938 ~ 23578990 (-) False si:dkey-100n23.5
XM_036959554.1 mRNA upstream 120558 23738606 ~ 23763120 (-) True LOC110502018
XM_036959572.1 mRNA upstream 158016 23776064 ~ 23785592 (-) False LOC110502024
XM_036959573.1 mRNA upstream 158016 23776064 ~ 23785691 (-) False LOC110502024
XM_036959570.1 mRNA upstream 158016 23776064 ~ 23788612 (-) False LOC110502024
XM_036959571.1 mRNA upstream 158016 23776064 ~ 23788613 (-) True LOC110502024
TU2049906 other downstream 147070 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 438067 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1187932 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1786485 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3151447 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 708681 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1230543 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1238776 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1367911 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 2092525 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile