RNA id: TCONS_00053011


Basic Information

Item Value
RNA id TCONS_00053011
length 1046
lncRNA type read_through
GC content 0.34
exon number 2
gene id XLOC_026322
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23663144 ~ 24050854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAAAGCAAAAATACAGAAGGCAAGTGACCGTTGGTACACTGCGGGGACCTCCACTCGGCTCTCAAAACTTAGAGGTAGAGAACAGTTTGGCACGCATGACGCCAACAACAGTGGATTACAGTGGACTAACAGATTTTATGATTTCCTGAATAAATCTGTAAAAGTCTCTTATTTGGTCATGAGGAGAAAAAGTGACCAATTTCAGGTCCATTTGGACATGGAGTGACACGTAAATTCTGTATAGACATTCTGTACGTTCCCCCGAGCGTGGAGTGTATGTGAGTATGTCAAATGTGCAttaatacatgtgtgtgtgttatttttttgaAGTCTGTTCTGTTAAAGCGTTGCATATGTAGACCAATAAAACTTTTGTGTAGGGTTtaatttttgttgattttacaattttaatgttttgtttgtaaataatttattagcTACTGTGTAAAAAGTTTGATAAGTAAATGTATAAGAGCTCACAAATGCAATTTGGGATGGTGTCAGATATTTGCTTTgtattacaaattttaaaaagtaagagTTCAGTTCTACAAACTCAGTATGTCCGTGTGTAAGATgtgtttttacattaataatgcttatggTTGTCTTTGCTGCATTCCTAATATATGCCGCACGTGCATAAATTGATTTCAGTTTTTTAAGTTTGTATATTCGACACAATAATATGCTTTATGTAACTgttcaacatttcaacaaaataccGGTACCTTTTTTTAGTTTGGTTTAATTACTTCTTTACATGCTTTGTGGTTGAAATGTATGTATAGCAATATATCTGGCAAATAAAGTTTCATTAACAAATGTGTGTGGATTTGACTGTCTTAAGTTAGGGGTAATCAACAAACTCCTGCCTTAATGTGTTAACACAATGTTAATTCAAGAAAGCTATTTTACATCACGAACATGGATTTAGCTGCATTGAAATCCGTGCGTCTTCATGTAGGCTTTGTTAATCGACAAAGCTGTTAGTTATGCAATATACAAAAGGCAGTTTTGGTGTGTTTAAAtcatatttcaaac

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006400 tRNA modification biological_process
GO:1901836 regulation of transcription of nucleolar large rRNA by RNA polymerase I biological_process
GO:0042790 nucleolar large rRNA transcription by RNA polymerase I biological_process
GO:0008033 tRNA processing biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053009 lncRNA downstream 12999 23686198 ~ 23688287 (-) True XLOC_026323
TCONS_00051331 lncRNA downstream 14586 23686198 ~ 23686700 (-) False XLOC_026323
TCONS_00051327 lncRNA downstream 104446 23594455 ~ 23596840 (-) True XLOC_026319
TCONS_00051323 lncRNA downstream 126643 23541377 ~ 23574643 (-) False XLOC_026318
TCONS_00053007 lncRNA downstream 373733 23323244 ~ 23327553 (-) True XLOC_026312
TCONS_00051333 lncRNA upstream 2192 23712766 ~ 23857430 (-) False XLOC_026322
TCONS_00053016 lncRNA upstream 29777 23740351 ~ 23744279 (-) False XLOC_026324
TCONS_00051334 lncRNA upstream 29788 23740362 ~ 23740665 (-) True XLOC_026324
TCONS_00053017 lncRNA upstream 37000 23747574 ~ 23751314 (-) False XLOC_026322
TCONS_00051335 lncRNA upstream 37000 23747574 ~ 23860941 (-) False XLOC_026322
TCONS_00051330 mRNA downstream 57456 23641938 ~ 23643830 (-) True XLOC_026321
TCONS_00051329 mRNA downstream 57535 23641935 ~ 23643751 (-) False XLOC_026321
TCONS_00051328 mRNA downstream 96890 23599290 ~ 23604396 (-) True XLOC_026320
TCONS_00051326 mRNA downstream 104477 23584663 ~ 23596809 (-) False XLOC_026319
TCONS_00051325 mRNA downstream 104754 23581614 ~ 23596532 (-) False XLOC_026319
TCONS_00051339 mRNA upstream 362146 24072720 ~ 24093144 (-) True XLOC_026326
TCONS_00051340 mRNA upstream 491382 24201956 ~ 24205339 (-) True XLOC_026327
TCONS_00051341 mRNA upstream 604123 24314697 ~ 24338163 (-) False XLOC_026328
TCONS_00051342 mRNA upstream 607569 24318143 ~ 24337814 (-) True XLOC_026328
TCONS_00051344 mRNA upstream 726789 24437363 ~ 24456538 (-) False XLOC_026330
TCONS_00051315 other downstream 266285 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051313 other downstream 318678 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051290 other downstream 1524158 22161451 ~ 22177128 (-) False XLOC_026304
TCONS_00051287 other downstream 2084246 21616920 ~ 21617040 (-) True XLOC_026301
TCONS_00051260 other downstream 2702926 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051337 other upstream 107348 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051343 other upstream 692575 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051348 other upstream 1035192 24745766 ~ 24745881 (-) True XLOC_026332
TCONS_00051354 other upstream 1368875 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051368 other upstream 1563568 25274142 ~ 25275351 (-) True XLOC_026342

Expression Profile

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