RNA id: XM_036959554.1


Basic Information

Item Value
RNA id XM_036959554.1
length 2540
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110502018
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23738606 ~ 23763120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCTCCTTTTCTAAAATCTCTGGTAGATCTATCTTGCGTCTTATGTGCGCAAAGGCCCGACAAATGTGTAAACTCTGATTGGAAGAGCAAGACCGACAAAAGCCCCCACGGTAGCCAATCAACGCACACACCAAACAAATACACTCGAATCAGATTGGACCGTTGTCACTCTTGAGCTGCTGGCAATGCTAAAATAGTCGCATTCTACGAAAGACCTTTGAAATTGGATCACATATCGGTACATCACCACTAGCTTCCTTAATTAACTCAAAGgtgagtcATGTCGTCGGTTTTCTCCAGCACGGACTCTGTGGGCGCCGAGCCCTCCGTCTGCCCCAACGCAGCCAAGCTCAGCAACGCACAAGCCAACGAAGTGGCTGCCATTTTGAAAGGGGGGTCCAAGGTCAACGGAGAAGCCATGTTGAACGGCCACAAGCTCTCCATGAATGGATCTGCTCAAGTGAACGAGGACAGTGCTGGCCATAAGGCTCAGAATGGACGCGTGAACGGGAACGAGGGGGAGAACAATCTAGAGAAGGCAGCCGCAGGCGTGGAGGAGAGGCAGTGGATCCGTCCTGACTTGCCCAGCAAATGCACTTGGAAACTGGGCGGGTCTTCCGTAGAGTCCCCTCACTGCCACTCTGAACTGACTGAAGCTCCCAGCATTCTACCCAACATCCTCGGGAAGATCGGAGACACACCTCTGGTCCGCATGAACAAGATCCCCAAAGCCTTCGGCCTTAAGTGTGAACTCTtggccAAGTGTGAGTTCTTTAACGCAGGGGGCAGTGTGAAGGACCGTATCAGTCTAAGGATGGTGGAGgatgcagagagagatgggatccTCAAACCAGGAGACACCATCATCGAGCCCACCTCTGGCAACACAGGTATTGGTCTGGCCCTGGCCTCTGCAGTTAAAGGCTATCGCTGCATCATCGTCATGCCTGAGAAGATGAGCATGGAGAAGGTGGATGTGCTTAGAGCCTTGGGGGCGGAGATCGTGCGTACCCCAACCGCCGCCCGCTTTGATTCGCCGGAATCCCACGTGGGCGTGGCCTGGCGTCTGAAGAATGAGATTCCCAACTCTCATATCCTGGACCAGTACCGTAACCCTAGCAACCCCCTGGCCCACTACGACACCACTGCCGAGGAGATCCTGGAGCAGTgtgatgGTAAGGTGGACATGTTGGTGGCAGGAGCTGGCACCGGTGGCACCATCACTGGCATCGCCCGCAAGCTGAAGGAGAGATGCCCCAACATCAAGATCGTGGGTGTGGACCCTGAGGGTTCTATACTGGCTGAGCCAGAGGAGCTGAACAAAACAGATAAGACCCAGTACGAGGTGGAGGGCATCGGATACGACTTCATCCCTACTGTACTAGACAGATCTGTAGTTGACAGGTGGTATAAGTCCAATGACGATGAGTCTTTTGCCATGTCACGCATGCTGATCAGGGAGGAGGGGCTTCTCTGCGGAGGTAGTTCAGGTACGGCCATGGCTGCAGCAGTTAGAATGGCCACAGAGCTGAAGGAGGGCCAGCGCTGTGTCGTCATCCTGCCTGACTCCATCCGCAACTACATGTCTAAGTTCCTGAGTGATAACTGGATGTGTGATAAGGGCTTCCTAACCCCAGAAGACCTGATGGTGTCCAAACCCTGGTGGTGGAACCTGAGTCTGCAGGGTCTAAACCTATTTTCCCCCCTCACTGTGCTGCCTTCAGTCAACATCAAGAAGACCATCAAGATCCTCAAGGAGAAGGCCTTCGACCAGGCACCCGTCGTTGACGAGTCCGGCGTGATCCTAGGGATGGTTACCCTGGGCAATATGTTGTCTTCAGTACTGGCTGGGAAGGTCAAGGCCTCTGACCCTGTCGCCAAGGTGCTTTACAAACAATTCAAACAGGTGCGATTGACAGATAACCTGGGTAAGCTGTCCCGTATCCTGGAGACAGATCACTTTGCCCTGGTGGTGCATGAGCAGATCCAATACATGGAAGATGGCTCGCCCTGTCTTAGACAGATGGTATTCGGGGTGGTGACCGCCATTGACATGCTTAATTACATCACCACGCGCGAGCGGCAGGGAAGCACACGCGAGCGCACGCTGTCAGAGTGCTCAATAACGTCAGAGTGCTCGCTGACCGACTAGCTGTGACCACTTCCTGTTTCCTGTGGAGAGGAGGAAGTGACCGCCCACCTGACACCCTCTAAGTAACGACAATGACAATGAagaagatgatgaagatgatgtaGAAATTTAGAAGTGGTGGGGGTTATGGTTTAGTCTTAAAATAAGTCAATATTAATTTCCTCCCTTTTGACTACATTGATTTTGTTATGTCTGTGATGATAATAATTATTCACTGTAGATTATACTGCGATTGAAGCAGCTTAGCTGGTTTCAGATACATGGTTTTCCTCTAACTTTAAGGTATGGaaattgcatgtaacaaacagtgtGCAACTAGACTGCCTTGCCTCTTCATTATTGAAAGTCTTTTACTTTTTTTATCTCCTTAAAAATAATAGTGTTCC

Function

GO:

id name namespace
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0006535 cysteine biosynthetic process from serine biological_process
GO:0005737 cytoplasm cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0004122 cystathionine beta-synthase activity molecular_function

KEGG:

id description
K01697 CBS; cystathionine beta-synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050094 lncRNA downstream 60146 23678164 ~ 23678460 (-) True G1791104
TU2050065 lncRNA downstream 82107 23656271 ~ 23656499 (-) True G1791084
TU2050064 lncRNA downstream 83151 23655255 ~ 23655455 (-) True G1791083
TU2050062 lncRNA downstream 85152 23652722 ~ 23653454 (-) True G1791081
TU2050049 lncRNA downstream 111378 23626710 ~ 23627228 (-) True G1791068
TU2050074 lncRNA upstream 36870 23799990 ~ 23802042 (-) False G1791091
TU2050073 lncRNA upstream 37373 23800493 ~ 23802042 (-) True G1791091
TU2050156 lncRNA upstream 59259 23822379 ~ 23840568 (-) True G1791155
TU2050148 lncRNA upstream 69753 23832873 ~ 23835601 (-) True appb
TU2050170 lncRNA upstream 73612 23836732 ~ 23904072 (-) True G1791168
XM_021579927.2 mRNA downstream 120558 23607430 ~ 23618048 (-) True LOC110502021
XM_021579938.2 mRNA downstream 153133 23583447 ~ 23585473 (-) True LOC110502029
XM_036959565.1 mRNA downstream 159614 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_036959563.1 mRNA downstream 159615 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959566.1 mRNA downstream 159615 23476970 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959572.1 mRNA upstream 12944 23776064 ~ 23785592 (-) False LOC110502024
XM_036959573.1 mRNA upstream 12944 23776064 ~ 23785691 (-) False LOC110502024
XM_036959570.1 mRNA upstream 12944 23776064 ~ 23788612 (-) False LOC110502024
XM_036959571.1 mRNA upstream 12944 23776064 ~ 23788613 (-) True LOC110502024
XM_036959553.1 mRNA upstream 40457 23803577 ~ 23829064 (-) False appb
TU2049906 other downstream 278246 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 569243 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1319108 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1917661 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3282623 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 563609 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1085471 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1093704 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1222839 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1947453 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile