RNA id: XM_036959572.1


Basic Information

Item Value
RNA id XM_036959572.1
length 7328
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110502024
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23776064 ~ 23788613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTAAAGCAAACTTGTTTAAAATATTTGCTTCTACCAGATGTGCTGCATGAAATGGAATAGCATGTGTAAAACTTCTCCTGCCAAGATGAAGTGGTTGTCATGCTCTAGGCTGGTTTGACAAATGGTAACCTCTCGTGGAACTATGCTGCATGACCAAATTATGCGAGATTTTAGTTCTGGTTTAACCAAAATGATTAAAATGGCCATTATCTTTGGTTTATCTTTGATCCAGTGAATGATGCTTTGTTTACCTTGTTCTTCTAATCAGAGATTGGAAAGGTTTATCAGCACTGGTTTTTCAGATAGTGAAATAAAATAGTGGAATTGATTAACATTGAATTGGAGTGTTATTCAATGTTGTGTGAATAACCCTTTCTCCCACCATTAACATGTATTTTGATTCATTCTAGCAGAGAGATGGATGTGTGCTTGTGGATGTGTGCTTGTGGATGTGTGCTTGTGGATGTGTGCTTGTGGATGTGGGCTTGTGGATGTGGGCTTGATTGTGCATCAGCTGATTTCCTTTGATGAAAACAGAAGGGCTTGTCAATAATCCTCTTGAATAATAACACTACTAAAAGATGAACGTTATGAGTTTGAATGTAGATCACTAAATACTGTTCAAGTTAGTGTCCTAAATATATGAAACAGGAAGTGTGTTTTATGCGGCTATACTACTGACACAAGCACAGCGATATACACACTTCCTCCATTTTTGGTGGTCCAAGCCTGTTCAACGACCTCTCTTCGAATATCCAAAGCATTTCTTGCTTCCTGCGTCTCAGTATACCAGACAAAAACATCTCAAACGACAGTGTCTCCCTGCTTTACCGTTTTTCTCTAGCTAGTCCATCATAAATTAACAGGTACGGTTTCTAATGCCAATAGGACAAATAATTCCTAATATTAGTAGGGCCAGGATGATACCAGTATTGCGATACTCGTTAGtgtcgtggcaaggaaacaaatcACAAAGCTGATTTTAACTTCttcaggaaaacagccctaaggTTGGAAACTAACATCATTATggtgtcatccagagtcacataaAACATTTCCCCCAAGCTATAGcgcacaatattttacatacagcaggtttttaaaggaccaaagaggtTGGTCTGCTTTTGTTTTCATTTTTTGCCAAGGATAACATATTACTGGCATTGTCACAACCCTAATTTTTAGGGAAATGTCTGCCCTGAATCTAGgtcatcctctcctccatccctttcACTCGGTCACATTTTAAATATCTAGAGAGCCGGAGAGCTTGACTTGAGAGCTAGATTCACCCGGGGGTCCCATGAGTCGCTCTCTTACACTCCCTTATGTTTTTGGACAGCAATGCTTTTTTCTGTTTTTGTACATTTGTctctactccagcattttggatgtTGAGGgcattttcatacatatctgatCTCCCAAGCTATCTGACCTCACAAGCTTGATGTCATTGTGTGCAAGGAATActgaccaaatactaaacttttgactactttaatactgTGACATTTGTTACGTCTTCAAATGGGGGGGACTAGATCTATAAAGagctttcatttctaaacagtaAATCCGATGTGTataaaaataccctcaaataaaaggtgattctatactgtcacctcatatgaaacatttgatctcaaatccaacaTGCTGGAatatagagccaaattaaaaaTGTTAGCATCACTATCCACACACGTGTATGTAGTGGAGTGTAATTCAGAAACAAATATTTCTCTACACATAACATTGGATGAAAGGTGACATGGCCTCTGCATCTCCATTGAAATTGCTGGCCATGCCTTTTGCAAGAGATTCCATGCAGAAAGTTGCCTGCTTGAACAGACTGCAAATTACTCTGGCCAGCCTCTGTTAGATCTGACCCTACCCTAGAGTGTGTTTTTCACTATTCTCTCCAGGTTGTTGGCAATCCTTCTTAGTTTTTTTGACAGAGCTCAAACCATTTGGCTGGATTATTGATGTAGTCATGCGCCTGATGTCCCTCGTTGTAGGGatgtgacaacaacaacaaaaaatgtgaagATTCCATGTGAATTCAAAATGCAGCTTTGCTGCTGCTAGCAACTGTTTGGATCTCATGGTGTGTTCCTTTCAGATGGTTAAGCATGGCACCTGTACTACCTCGAGGGGTTACATTTGGACGGCACATTTTTGGTTGAATCCATTCAGTTGTGCAACCCCACTTGGTATCCCCAACTATTAACAATGATGGCGTAGTGGTGGAGAATTGACTCAAAAATAATTGATTCCTTGTTTCCTTGCACGTGAACGCCTATTTCTGAGTGTCAAGCAGAATCAACTCTTTTAAGATTCAGTATTTTTGGAACAGATGAGacttaaaaatttttttttatgCACTTTCAACAATGCAAACATTtgcattttggtcatttagcagacacactgATACAGAGTGACTTACTGGAGGGTTAAGTGGCCTGTACACGGGCACatcaacatttttttatttttacctaaTCTGCTCAGgaattcgaaccagtgacctttcagttactggcccaatgctcttcactgctaggtggagagagaggagaggggtaccgTATAGGCAGGTCGGACACCAGGCAGACaagtcagaaccgtgcactaggcttATCTATTGGCAATCAAATGCTGTATCTCGCAATTTCTTGGCTTGCAATGTCTCGCAACTTCGGTAAAGCAGGGCCTATCATCAATGAATAGTCTAGGGTAGTCTATATACAACAGACCGAAGACTAAACACACATATATGTCTTGGGAATCTCTTGCATGCCAAATTCACCAAAATCGACTCAAgtttgcctctttctctctggtttTATTTAAATTGCGCAACGTTCCCCATGTCTTTAGCCGATACAATGGAAAATGTTTTGTGATAACTACACTGCAATTTTTATTGGACATTTTTTTCCCTTAACATTAATGATCCCAATTTGGTTTAAACTTTCACACCCCTACGTCGTTCCCTCCTATTAATACATATTGTGACTGCGTTCAACtaaatatgactgagtcactgaACATAATTTCAGTCCTCTTTATCAACAGTAATCTCAAGCTTTTGCAATAGCTAGCACTTTTCCACCAGTTGGGCTACTCCCTGCAATGGGTTGTCTGAAGTGGTAGGATTTATCTGTGGCCCGTTCCCATCTCAAAGTCAGATGTATCTCTCTCACTGAACAGATTATTAGAACATAGCACATCTAAACTCTAGGCTTCCTCTAGGTTTCCCTACAGCTCGCCTTGCCTGCATGGGACAGAGAAAAGACACAAACTCCCCAGCGTGTCCACCGGTCAAGCACGGACTCCTGCTTTATTTTGCCCTTACCCCTCCTACAGTATCAAGGTTCCTCTACATCCAGGGATTTTGTCTGCCCACCCTCTATAGGTTCTAGGTCTCGGGATTTGGTCCGCCCCCCTCCTATAGGTTCTAGGTATCGGGATTTGGTCCGCCCCCCTCTTATAGGTTCTAGGTATCGGGATTTGGTCTGCCCCCCTCCTATAGGTTCTAGGTATCGGGATTTGGTCTGCCCCCCTCCTATAGGTTCTAGGTATCGGGATTTGGTCCGCCCCCCTCCTATAGGTTCTAGGTATCGGGATTTGGTCCGCCCCCCTCCTATAGGTTCTAGGTATCGGGATTTCTTATTTTATTGATTAAACCTTTTCACATTTTAGCAAGAGGGGCCAAACAGTCCTCTACCTTCAGCACCACCTGTGGGTTAAAAATAAAGTCTGTTTTAGTTAGCTATATAgcctattttttgggggggggtttagtttttgtatttttataaacCATTTTTTGATTTTTCCCTCTGCAGACCATCGTGATTCAAAACATCTACCGTAACCCCCAAAACAGTGCGCAGACGGCAGACGGCTCCCACTGTAAGTGCCTCCGGTCCAGTCCTCTCAGCCCACCAGGTCATTctagctctctccccctcctcagaTTTTAGGTCTGCGTCTCCACTGGCTTCCTGCAGGGCTTCGGAGGGTCTGTCTCAGCACTGGTAGCAGGGGGTACcacaacactacctcaacacttTAGTATATCGCCAATCtaatcaattttttttaaatatattttttaatcagtTGCCATTCAGAGGTCTATGCCTAGGTGTAGAATGACATGCTCTGATAGTGACATTGAAAAGGACTAAAACAAATGATGCCTTGATCCCCACAATTCACATTGGATCTTTAAAGTTATTATCCACAGGAAATCTCCACATAGTACCTGTTTTCTAACAGGTATAATGCACAGATGACAGACTTTAGGTATTTTTCAGGCGCTTTCAGAGAAGACTGACAATACACCTGCCCTAGTGCCCAACATGCGTTTGTGAATAGCTAGGTATCCATTCAATTGGCAACATTTTATGGGAATATTCGAAAATCTGCCTAAAATTATGTGCACATTTTCCCCCATGAGATATTTTTCtgttgcagataaaaggctgtgcgtgatgagtgaacataaaaaaaacagtttGCTGTTTAAttggtttccattgcattttcaactctactgatggttttctcacgAGAACGTGGGTTATCGCcagtgtgcccactctggtattggcacgtTCTCTCTAGCAGCGCTATCTGCTATCTGTTGGCTAGAGTGCGTGTATAGCCTACATGattacatttattattattatggacaaaagagcgagATTATTTTTGTCCGAGGGCAGCCGAGTATCGATAATCATGTCACCAGAacaagaccctcaatatttattggaaaggagcatcaagctcatcaccttgcacttttacccccctgtgaagttcatcgtaactttcatctgtagtctaataaactgcatgccgacgagtcatagtgggaggaacACATGtcatatatcaatatttgcgcttAAAAGCGTTTCCACCAACATTTCTCGCATTAATTTTACCAActcaaaaagatcccaccttgtctagcgtattttgttttgtcgacatttggaaagttgaatgaaaaatgtttccatcaggcctgtcatggcTTCTTTTCATCCGAAATGTTTCTACTCGCATTAAAAGGTTGGAGACAGCAAACACATCTACATGAGTTACTGTCTAGACACAGAACAGTTTGTGATTTTAGTTTTTGCTCTTGCAATACTGCCGCCCCTATATGTTAGACTGATTCAGACGTCATCAGCCATATTGTAAATGTGTAAATGGTACCCTGATGTTGAGCCCCGGCTAGCAGAGCTGATGCATTGCCACTCGCTTCCTCTAAGGTAAGTCGTGGGTTTGTGGTCTTGTTGCTGTCACGTGTAACTGTTCTGTTTCTCAGCTGAGAAACTCAGAATGACTGGCAAAAAgttacttttaaaaatgtattaaaaggaAGAAATGATAACTAGTAATAGAAACATCTTGGCATCCAATCGCCTATGATTCAGCAAGTTCTAGAGGTCACTTCAAGCCTCAATGACCTGGTATGTAATGTTTGGGTAGGCTAAATTTTcggttgtattggattttccaccatcattttccaTAGTCAAATATTGTCATGCTGAGACTTTCACTTCTTCCAGCTCCATCTCTTTCAGCGTGGACCAGTCCCATGGATCATCTTAACCTCTTTCAGTCTTCCCTTCCTACCCTGTTCTGGGCCTGGTTGGGGCACAAGTACACAGTTTtgagggagggggatgggagtAAATGCACCTATTTAACTACCATTTTAGAAATCTGCCTGAAACTATctcaaaaatgtacattttgtattTCAGACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCCGATGGTTTGCGCTGTGCCGTCAGTGACGTGGAGATGCAGGAGCACTATGACGAGTTCTTTGAGGAGGTCTtcacagagatggaggagaagtatggagaggtggaggagatgaACGTGTGCGATAACCTGGGAGACCATCTGGTTGGAAACGTATATGTGAAGTTCCGTCGTGAAGAAGACGCGGAGAAGGCAGTGATGGATCTGAATAACCGCTGGTTCAACGGTCAGCCCATCCACGCCGAGCTCTCTCCCGTTACCGACTTCAGAGAAGCCTGCTGTCGCCAGTACGAGATGGGGGAGTGCACTCGAGGAGGCTTCTGTAACTTCATGCACCTGAAGCCCATCTCTAGGGAGCTGAGGAGGGAGCTATACGGACGCCGCAGGAAGAGGGGAGGGGGGCATCATTCTCGCTCCCGTTCCAGGGAACGTCGTTCGCGCTCAAGGGACAGGGgaaggggaggtggaggtggtggaggtggacgtGACCGCGAGAGAAGGCGCTCCAGAGACCGAGAACGCTCTGGAAGATTCTAAACCGAGCATCTACCAAACagccatccctcccttctccatTATCCCTCTTCATCCATCCCCAAATCCCTCTATCCTTGCCTCCATTGCAGCCTATCAATTCACCCTTGGCCTTTTCAATTCACCCTTGGCCCTTTCATATAATTGCGTCCCAATGACAAATTAATTGGAAGATGTtggacatgtttttttgtttgttttttttcttccaagaAATGGAAAGCTTTtcttttcaataaaaaaaaactatgaTTTGTACAAATTTATTCAAAATAGTTACTCTGGAAAACAAAAAGTAATGTTTTTATAGTGAACAGCTATGAGTAACTGTTACTTTTGCCTTGAGTCATCATACTCTAGACTGGGCTTACTGTAAGTGAGGGAATTTAAATACTTCCCATAGACTCCTCCCTGATTCCCAGTAACTTGACTCCCTCAGCTAATTTCTCACACAGAACATGCTCAGCTGTGAACTGAGTGTTCACTTGGCTCAAAAAGACAGTTGCCATAGATATGAAGCATCTCCTAAACCATAACCATATCATACCTCTTTTTTTCCAGTTTCCCATGCCGACATTTGCCTGTTTGGATTATGTCTACAAGTACATATTATTGACTGTGTTGACCTATAATTTTGGATAAATTGACTTGGCTAGAGAGGGAGGAGTCAAGGCCATAGTGTGGTTGAAGTAACACATTTAATACAGAATTCTTCTGGGTACTTACATTCAATatgagaatgacaagagtgtgcaaagctgtcaaggcaaagggtgtttactttgaagaatctaaaatatattttgatttgtttaatacttttttggttactacatgattccatatgtgttatttcaatgttttgatgtcttcactattatactacaatgtagaaaatagtaaaaataaaggaaaccccttgaatgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050094 lncRNA downstream 97604 23678164 ~ 23678460 (-) True G1791104
TU2050065 lncRNA downstream 119565 23656271 ~ 23656499 (-) True G1791084
TU2050064 lncRNA downstream 120609 23655255 ~ 23655455 (-) True G1791083
TU2050062 lncRNA downstream 122610 23652722 ~ 23653454 (-) True G1791081
TU2050049 lncRNA downstream 148836 23626710 ~ 23627228 (-) True G1791068
TU2050074 lncRNA upstream 14398 23799990 ~ 23802042 (-) False G1791091
TU2050073 lncRNA upstream 14901 23800493 ~ 23802042 (-) True G1791091
TU2050156 lncRNA upstream 36787 23822379 ~ 23840568 (-) True G1791155
TU2050148 lncRNA upstream 47281 23832873 ~ 23835601 (-) True appb
TU2050170 lncRNA upstream 51140 23836732 ~ 23904072 (-) True G1791168
XM_036959554.1 mRNA downstream 12944 23738606 ~ 23763120 (-) True LOC110502018
XM_021579927.2 mRNA downstream 158016 23607430 ~ 23618048 (-) True LOC110502021
XM_021579938.2 mRNA downstream 190591 23583447 ~ 23585473 (-) True LOC110502029
XM_036959565.1 mRNA downstream 197072 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_036959563.1 mRNA downstream 197073 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959553.1 mRNA upstream 17985 23803577 ~ 23829064 (-) False appb
XM_021579894.2 mRNA upstream 17985 23803577 ~ 23835647 (-) False appb
XM_021579896.2 mRNA upstream 17985 23803577 ~ 23835647 (-) False appb
XM_021579917.2 mRNA upstream 148268 23933860 ~ 23938722 (-) True LOC110502014
LOC110502070 mRNA upstream 166983 23952575 ~ 23958559 (-) False LOC110502070
TU2049906 other downstream 315704 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 606701 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1356566 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1955119 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3320081 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 541137 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1062999 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1071232 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1200367 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1924981 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile