RNA id: XM_021579896.2


Basic Information

Item Value
RNA id XM_021579896.2
length 3146
RNA type mRNA
GC content 0.53
exon number 17
gene id appb
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23803577 ~ 23835647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTTTGGAGCAGCTGGCCAGCCTCGTTGTCGCTCTCCATCATCCTATGCTCGTAACAGGCACCGTCGCCAAGCGGGAGTGCACGGGAACGGGATAGAGGTTCATACCAACGGATTGATCTGAATATTTTCAATATATTGGACGGAACTGATTTAGGGTCAACGGCATGGTCGAGCGAACAGCATTTCTGTTGTTATGGGTGGCGACCTTGACGCTGACATCGGAGgTGCCATCTGATGACTCAGTGGCTCTGCTAGCGGAGCCCCAGATAGCCATGTTCTGTGGGAAGCTCAACATGCACGTCAACGTCCAGAGTGGCAAGTGGGAGCCAGACCCCTCCGGCACCAAGAGCTGCATCGGAACCAAGAAGGGCATCCTGCAGTACTGCCAGGAGGTGTACCCTGAGCTCCAGAGCACAAACGTGGTGGAggccaatcagccagtcagcatCCAGAACTGGTGCAAGAAGGGACGCAAGCTGTgtcgcagtcacacacacatcgTGGTGCCCTACCGCTGCCTGGtTGGGGAGTTTGTGAGTGATGCGTTGCTGGTTCCTGATAAGTGCAAGTTCCTGCACCAGGAGAGAATGGACATGTGTGAGAGGCACCTGCACTGGCACACCGTGGCTAAAGAGTCCTGTGGAGACCGCACCATGAATCTCCATGACTACGGCATGCTGTTGCCATGTGGCATCGACCGTTTCCGAGGGGTGGAGTTTGTGTGTTGCCCGGCAGACATGCATCGCGAGTCAGAGAGCGTCGAGCTGACTGAGTCTGACGTGTGGTGGGGCGGAGCCGAGACTGAATACACCGATAACGGCATGCTCCACCAGGCGGATCAGGGGGCTGCCACCACTGAGGATGATGAGGATGCCTTCGATAGGGACGAGGACGGTGACGGTGATGAGGATGAAGATGATGTGACTGACAAACGGGACAGTGGTGAACGCACCTCCAGCATCGCCATGACAACTACCACCACGACCACCACCGAGTCGGTTGAGGAAGTTGTCAGAGtgCCCACCATGGCCCCTGCCCCCCCTGACGCAGTCGACCATTACTTGGAGTCTACTGGAGACGACAACGAACACGCCAACTTCCAGAAGGCCAAGGAGAGTCTGGAGGCCAAGCACCGCGAGAGGAtgtcccaggtgatgagagagtgggaggaggcaGAGGGGCAGGCCAAGAGTCTCCCTCACGCAGACAAGAAGGCTGTCATTCAGCACTTCCAGGAGAAGGTGGAGGCCCTGGAGCAGGAGGCAgcaggagagagacagcagcTGGTTGAGACCCACATTGCCCGGGTGGAGGCCCTGCTCAACAGCTGCCGTCGCATGGCCCTGGATAACTACCTTAGCGCCCTGCAGGCCAACCCACccaggCCTCGTCAGGTGCTGGGCCTTTTGAAGAAGTATGTCCGTGCAGAGCAGAAGGACAGACAACACACCCTGAAACACTACGAACACGTCCGCATGGTGGACCCCAAGAAGGCTGCTCAGATCCGACCCCAGGTGATGACCCACCTGCGTGTGATTGACGAGAGGATGAACCAATCCCTGGGGCTGCTCTTTAAAGTGCCCAGCATGGCCAACAAAATCCAAGACCAAGTTTcaaTCCTGATGCAGAGGGTTCAGTCAGAGCTGTCTCAGCAACTCTCATCTCTGCAGAGTGATGAGAGGACTGATGTCAGGGTGAGCTATGGGAACGATGCCCTGATGCCTGACCAGGCCTACAGCTCTGCCCCTCTGGACCCTGGCATGGGCCTGGACAGACTCGGCTTCATCCACCCAGAGAGTTTCAACCAACCCAACACCGACAACCAtgTTGAGCCTGTTGACGCTCGTCCACTTCCAGATAGAGGTCTGCCCACTCGGcctgtCTCTGCTCTGAGGCCTGAGGAGTTCCATGAGGTGCggatggagaaaggagagaggcaaAGCGCCAGCTATGGAGTGCATCATCAAAAATTGGTATTCTTTGCTGAGGATGTTGGCTCCAACAAAGGTGCCATCATTGGGCTGATGGTGGGCGGGGTTGTCATAGCGACAGTCATCGTCATCACTCTGATCATGCTGAGGAAGAAACAGTACACCTCCATCCATCACGGAGTCATCGAGgtggatgctgcagtgacCCCAGAGGAGCGACACCTGTCCAAGATGCAGCAGAATGGTTATGAGAACCCCACCTACAAGTTCTTCGAACAGATGCAGAACTAAGGAGCTACCCTTTGATCCCTCACTGACCCTGAACCCTCCTTAACCCCTCACACCTAAGCCCCGTTGCATTTTGGTCCCTAAACCCTTCTCCTCGCTCCTACTCTTAATTTCAATGTATCTTAAAGGACTGGATTGGTGAAACCAGTATGACTGAAGCTCCACGTAAATCTATTGGGTTAGAAAGAGCCGTGGTCATATTACTTATACACCCAGGGGTGGTGAAGGCCAAGGGGCTAGGAGGCAAAATGGAACCAAGTCACACACTCACCATCTCTTCCTCGTAGAGTGCAGCACATCAACATCCACAGCTGCCATTAGTCAGACAAGGGTATCCTTCTTCACCTACACATTTTTAGCCAATCACAGGTGAGATCCCGTAGCGTTTGTACAGAGTAGAGAAACACATTGATTTATCTGTCCATGTATCTGTGGGTTGGCCCTCCCCCACAGTACAGCACTCACATCTCTAAGAGGGCTAAACAAAGGCCTCATATACACCTGTAATCTTCCTCCCTCTGAagtactctcctctccccctcctcctccctccatctctcccactgCCCCTCTCAGATGACGGCTGTGCTGTTTTTGGTGATGATATAACAGCTCTTAGTGCTAGTGAAGGGAGGATGGGCTCAGTCTACCCTGAGCTCCTCTCTGCAGGATTATATCCCAAGAGTTTCAGGTTTGTTTTTCAGGTAAAacatatatacaaaatatatatatatatatgtcctcAGAAATATGTAAATGAAGAAATattgaatgtttttattttgtgcaaaatgtattgaaaaaaggCAGAAAAAAGCTGTAACTATATGTAGTGCATGGTGATATTGATGacggatatacagtgccttgcgaaagtattcggcccccttgaactttgcaaccttttgccacatttcaggcttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050074 lncRNA downstream 1535 23799990 ~ 23802042 (-) False G1791091
TU2050073 lncRNA downstream 1535 23800493 ~ 23802042 (-) True G1791091
TU2050094 lncRNA downstream 125117 23678164 ~ 23678460 (-) True G1791104
TU2050065 lncRNA downstream 147078 23656271 ~ 23656499 (-) True G1791084
TU2050064 lncRNA downstream 148122 23655255 ~ 23655455 (-) True G1791083
TU2050170 lncRNA upstream 1085 23836732 ~ 23904072 (-) True G1791168
TU2050152 lncRNA upstream 5245 23840892 ~ 23868836 (-) True G1791153
TU2050208 lncRNA upstream 94075 23929722 ~ 23930005 (-) True G1791206
TU2050209 lncRNA upstream 94957 23930604 ~ 23947305 (-) True G1791207
TU2050220 lncRNA upstream 115369 23951016 ~ 23974542 (-) False LOC110502070
XM_036959571.1 mRNA downstream 14964 23776064 ~ 23788613 (-) True LOC110502024
XM_036959570.1 mRNA downstream 14965 23776064 ~ 23788612 (-) False LOC110502024
XM_036959573.1 mRNA downstream 17886 23776064 ~ 23785691 (-) False LOC110502024
XM_036959572.1 mRNA downstream 17985 23776064 ~ 23785592 (-) False LOC110502024
XM_036959554.1 mRNA downstream 40457 23738606 ~ 23763120 (-) True LOC110502018
XM_021579917.2 mRNA upstream 98213 23933860 ~ 23938722 (-) True LOC110502014
LOC110502070 mRNA upstream 116928 23952575 ~ 23958559 (-) False LOC110502070
XM_021579905.2 mRNA upstream 186740 24022387 ~ 24041358 (-) False LOC110502010
XM_021579906.2 mRNA upstream 186740 24022387 ~ 24049343 (-) False LOC110502010
XM_021579903.2 mRNA upstream 186740 24022387 ~ 24050582 (-) False LOC110502010
TU2049906 other downstream 343217 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 634214 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1384079 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1982632 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3347594 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 491082 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1012944 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1021177 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1150312 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1874926 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile