RNA id: XM_021579917.2


Basic Information

Item Value
RNA id XM_021579917.2
length 2552
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110502014
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23933860 ~ 23938722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTTTGGAGGACTCCTTAATTTTAAACCCCGATAACATATTGATGTTTAACTTGTCGCGGGCATCCGGTATCGAGACAGGGGTCCAGGAGCCCTACATTTGGCTGCCCGGTATCGTTATCGCCACCGTCTACGGACTTCTAATCATTATTGGAATTATCGGTAACGTCACGCTCATGAGAACGTTTATCGCCGTTAAATCCATGCGGACGGTGCCCAACCTATTAATGTCCAGCCTCGCGCTCGGTGACCTTCTGCTGCTTGTCACGTGCGCTCCGGTGGACGCAAGTCGGTACCTCGCTGAAGAGTGGCTCTTCGGCCGGGTGGGATGCAAACTCATCCCTTTCATCCAACTCACCTCCGTCGGGGTTTCTGTTTTCACACTCACTGCGCTCTCTGTAGATAGGTACAAGGCCATTGTCAAACCCATGGACATTCAGAGGTCCACAGCTAAGATCTCCTTCCGAGCAGCAGCCATCTGGCTGTTCTCCATGACCCTGGCCATTCCTGAGGCAATCTTCTCCGATCTTCACACCTTTAACATCGGCCAGACCAATGACACCTTTGTGACATGTGCCCCCTACCCCAACGCCGGGGAACTGCACCCTAAGATCCACTCCATTGCCTTCTTCCTCATCTTCTACATCATTCCACTCATCATTATCTCTGTGTACTACTGCCTCATCGCATGCAGCCTGATCCGGAGCGCCTCAGACATACCCGTGGAGGCACACTTACATATCCAGAAACAgATTGAGTCTAGGAAACGTCTGGCTAAGACAGTGCTGGTGTTTGTGGTTCTGTTCGCTGTGTGCTGGCTCCCAAGTCACGTGATCTACCTGTACCGCTCCTACCACTACGGCCAGGTGGATACGTCCCTGGGTCACTTCATTGCCAGTGTGTGTGCCCGCGTCCTGGCCTTCATCAACTCCTGCATTAACCCTTTCGCCCTCTACCTGCTCAGCAACAGCTTCCACAAGCAGTTCGACAAGCAGCTCCGCTGCTGCCGCCGCCCACGAATCAGGTGTAACGCTCAGGGCACGAGGCGGACCAACATGCGACTGACTTCGGTCAAGAGCACCAATCACTCACTGGATAACTTCAGCCATGGGGCTCATGTTTGTCAGGAAGGCTGTGTGTAGCGACAATGCTCCAGACTTGTAAATGTCCCATTCCAACACTGACACACTGCTAGCAACATCATTTATGACTGTAACCCATATagtgggactgtgttttatatcccAGTGTTGATATTGAAGCATCATAcatcattctaattctatggttgATATGTTGGTCTATATGCATCCAATGATCCATGATTGATACAAATCCgtgttttattttaaatttagaatgtataatctaaacAGCTGCCACGTATGTAAACCAATGTGGCAGAACTGGACTCTGTCCTCTGGAGATGCAGTTCTATTCTGGTTACTCATTTGAACCAAATTGATCCATGACAACCCAACCAGGTGTAAATGATGAGTTGGTAATGacgagtgagagaaacagacacctacAGTATGAATGTACAGTGCCACCTACAGTGCCAACTGCCAATGTGTACACACTTCGACCCCTAAAGGACAGTTCTGTAGGGATAACTCCAGCTGATGTAAAAGACCAACAACTTTGGTGATTTGATAGATACTGTAGCCGACATTGAAGGATCAATTTCCTCAAGAACAGTTGCCCAGGAGTAGTCACCGCTGCCTCAAAGGCTTGGAAATGTTCTATCTACATACCCATATACATCTCAACACATAGACATATCAGCATTGGTGGAAGAGGAGATGTAAATATCTGTATACAGTTTATTGTACACATCAGAGTACAGTATCTGTTTGGGTCGAATGTTAAAATGGCCAAATACactatttaccattcatttctattgtgCACAACATAATCCGAAACACAAgaaaaacaaactgcaaatgagTGTAAcaagtttgtagtcacaagcttgatgtagttcattgtgtgctaggaatattgGACCAAAGACTAAATGTAATACACTATAAGTGCATTTGCCCAAATACTTATGATACCCTCTAATGGGGGGACTAGAAACacaaagtgctttcatttctaaacagtaaaacagaTATGCATGAAAGTACCCTCAAATAAAAgatgacattctgtactgtcgcctcatataaaatatttgatctaaaatcaaaaatgctggagtatagagccaaattaaaagtttcagcttcactgtccaaataaatatgtaggggAGTATGTGTCCAAGAATAGTTCTATGTTGTCCAAAGTGATACATATGTTTCTCAGTGTTTGATAAACATAAAAAGTAATTCTCTATGGATTAATGGAACATTATGTTGTTGTTTGAGCATTTTCCGTCCTCTCAAATGGCCTAAATTGTTCCTTTATAGAACATGTTTATGTGCTGTCTCGTTCAATGAAAacgtttttattgtgttacaattaAGTGGCTATATTTTTTTGCTGTAAAATTGTTTTTCAATGTATATTATGATGTTTATTGTTGATTAAAGGATTA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0031989 bombesin receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004946 bombesin receptor activity molecular_function

KEGG:

id description
K04169 GRPR; gastrin-releasing peptide receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050208 lncRNA downstream 3855 23929722 ~ 23930005 (-) True G1791206
TU2050170 lncRNA downstream 29788 23836732 ~ 23904072 (-) True G1791168
TU2050152 lncRNA downstream 65024 23840892 ~ 23868836 (-) True G1791153
TU2050156 lncRNA downstream 93292 23822379 ~ 23840568 (-) True G1791155
TU2050148 lncRNA downstream 98259 23832873 ~ 23835601 (-) True appb
TU2050220 lncRNA upstream 12294 23951016 ~ 23974542 (-) False LOC110502070
TU2050229 lncRNA upstream 12294 23951016 ~ 24038256 (-) False LOC110502070
TU2050230 lncRNA upstream 12294 23951016 ~ 23974542 (-) False LOC110502070
TU2050234 lncRNA upstream 12294 23951016 ~ 23974542 (-) False LOC110502070
TU2050224 lncRNA upstream 30053 23968775 ~ 23974542 (-) False LOC110502070
XM_021579894.2 mRNA downstream 98213 23803577 ~ 23835647 (-) False appb
XM_021579896.2 mRNA downstream 98213 23803577 ~ 23835647 (-) False appb
XM_036959553.1 mRNA downstream 104796 23803577 ~ 23829064 (-) False appb
XM_036959571.1 mRNA downstream 145247 23776064 ~ 23788613 (-) True LOC110502024
XM_036959570.1 mRNA downstream 145248 23776064 ~ 23788612 (-) False LOC110502024
LOC110502070 mRNA upstream 13853 23952575 ~ 23958559 (-) False LOC110502070
XM_021579905.2 mRNA upstream 83665 24022387 ~ 24041358 (-) False LOC110502010
XM_021579906.2 mRNA upstream 83665 24022387 ~ 24049343 (-) False LOC110502010
XM_021579903.2 mRNA upstream 83665 24022387 ~ 24050582 (-) False LOC110502010
XM_021579904.2 mRNA upstream 83665 24022387 ~ 24050582 (-) True LOC110502010
TU2049906 other downstream 473500 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 764497 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1514362 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2112915 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3477877 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 388007 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 909869 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 918102 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1047237 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1771851 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile