RNA id: LOC110502070


Basic Information

Item Value
RNA id LOC110502070
length 1087
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110502070
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23951016 ~ 24038256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggTCCGGAGCCTCCTGAGACGGTCGGCGGTCCGGAGCCTTCCGAGACGGCCCGGCTCATCCGGCGACGATCTGCGGTCCGGAGCTTCTGGCGACgatccccgcaccagagccgccattgAGGATGACGTATCCACGAGCGGAGTGAGTACTTCGCCCCGCACCGGAGTTTCCCCCAacgGTATCATTGGAGAAATAGGCTACAACCAGAACAAAGTGAACCAATGGACTGCCAGCATCGTGGAGCACTCTCTCACCCAGTTGGTCAAACAAGGGGAGACCATTCAAGTTCATAGTGAACTGTGTCATCATGCAGAAGACTGGTGCTGGTCTCCACACGGCCAACTCTTGCTACTGGGACACTGCTACTGATGgaagcagcacagtcaggtgggaGAACCGCACCATgtactgtgtggtgtgtgttttcgCTGTGGCCGTGACCTGTTAACTTGGGACCCTCAATTTCCCTTCCCAAAACCCCCTCTCGAACACGGCCAGGCATGCACCAGGACTACCAAGCCTTGAAGATCCTATGCTGATTACCTATGAACAGAAATGTCTGTTGTACAAAAACACTTCTTAACCCCACAATTACAAACTGACCACCTACAATGGGAACCATAGGATGGGAATTCAGTGTTCTTGCTATATGTGGTGAATGTatagtgttgtttagtgttgtctgTGTGTAAATGTAAATACAGACCAATAGTTAGAGAGATATGCTCAGTATGGATTTAAGAAATGGCACTACCCATACTGGTAAATGTTCTTCTTTGAACAATCACATAATATCTTCAACTAGGCTATACATGTGTAATAATAGTATTAACTAAATCAATAAATCACAATTATAGTTACAACTGTAAACAACAGGCTTATCAATAGTGTGCCATCATTGTACCACAATCTAAAATGTTTTCCCTGAGGCTCATAGCAGAGGGACCAGGTTCAGTACATTCCTAACAGagttcagagagagacagattggaggTTCCATTGAGCATTGTAGTTTTATGAAGGTCTATGTTTAATTTAAGAATATGTTAAGACATAATAATTAAACATACtccatttatattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050209 lncRNA downstream 5270 23930604 ~ 23947305 (-) True G1791207
TU2050208 lncRNA downstream 22570 23929722 ~ 23930005 (-) True G1791206
TU2050170 lncRNA downstream 48503 23836732 ~ 23904072 (-) True G1791168
TU2050152 lncRNA downstream 83739 23840892 ~ 23868836 (-) True G1791153
TU2050156 lncRNA downstream 112007 23822379 ~ 23840568 (-) True G1791155
TU2050224 lncRNA upstream 10216 23968775 ~ 23974542 (-) False LOC110502070
TU2050240 lncRNA upstream 10216 23968775 ~ 23972132 (-) True LOC110502070
TU2050320 lncRNA upstream 76979 24035538 ~ 24036176 (-) True G1791293
TU2050323 lncRNA upstream 92741 24051300 ~ 24051562 (-) True G1791296
TU2050324 lncRNA upstream 93054 24051613 ~ 24051828 (-) True G1791297
XM_021579917.2 mRNA downstream 13853 23933860 ~ 23938722 (-) True LOC110502014
XM_021579894.2 mRNA downstream 116928 23803577 ~ 23835647 (-) False appb
XM_021579896.2 mRNA downstream 116928 23803577 ~ 23835647 (-) False appb
XM_036959553.1 mRNA downstream 123511 23803577 ~ 23829064 (-) False appb
XM_036959571.1 mRNA downstream 163962 23776064 ~ 23788613 (-) True LOC110502024
XM_021579905.2 mRNA upstream 63828 24022387 ~ 24041358 (-) False LOC110502010
XM_021579906.2 mRNA upstream 63828 24022387 ~ 24049343 (-) False LOC110502010
XM_021579903.2 mRNA upstream 63828 24022387 ~ 24050582 (-) False LOC110502010
XM_021579904.2 mRNA upstream 63828 24022387 ~ 24050582 (-) True LOC110502010
XM_036959586.1 mRNA upstream 94703 24053262 ~ 24072305 (-) True LOC110502071
TU2049906 other downstream 492215 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 783212 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1533077 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2131630 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3496592 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 368170 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 890032 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 898265 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1027400 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1752014 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile