RNA id: TU2050220


Basic Information

Item Value
RNA id TU2050220
length 2997
lncRNA type read_through
GC content 0.41
exon number 7
gene id LOC110502070
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23951016 ~ 24038256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGGAGAATGTTCTTAGTTAAGGCTGTATTGTTTCAATCTTTCCCCTCGGAGTCATGACAAGGAGTGATGAGGTCACTGTGACTGGAAATGGCTTTCTGGATCCGCTGGGTTCCGGAAATCTGTCATCTGTAGTCCAGAGgaagagtagctgctgcttttgcaacagctaatgggtatcctaataaaataccaaataccaaatacctgcaggAGGCCTTGTCTGAGACGGTCTCTCTTCTCAAAATAATTATCACCACTCCAATGACAACCCGCCAAGTCAGAGAGACTTTTCCACCCTTAAAAGGATAAAAACCTTCACAAGCAAttccatgggccagaaaaggttaaATGCATTGGCCttcatccagagaatgccagacttggATGACAAAGTAATTGAGAAGTTTGCCCACAAGGACCACCCTGTCAAGTtactgttcaagtgagcacagcacaacaatgGTATCATTGGAGAAATAGGCTACAACCAGAACAAAGTGAACCAATGGACTGCCAGCATCGTGGAGCACTCTCTCACCCAGTTGGTCAAACAAGGGGAGACCATTCAAGTTCATAGGCTGGACGATGGGCCCTTTGTGACCGGGAGCAAGGCTCTGTGCATGACAGAATGCTTACAGCAGGAAATTCATCATCAACATGGTCTTGTGTTCCAGTGAACTGTGTCATCATGCAGAAGACTGGTGCTGGTCTCCACACGGCCAACTCTTGCTACTGGGACACTGCTACTGATGgaagcagcacagtcaggtgggaGAACCGCACCATgtactgtgtggtgtgtgttttcgCTGTGGCCGTGACCTGTTAACTTGGGACCCTCAATTTCCCTTCCCAAAACCCCCTCTCGAACACGGCCAGGCATGCACCAGGACTACCAAGCCTTGAAGATCCTATGCTGATTACCTATGAACAGAAATGTCTGTTGTACAAAAACACTTCTTAACCCCACAATTACAAACTGACCACCTACAATGGGAACCATAGGATGGGAATTCAGTGTTCTTGCTATATGTGGTGAATGTatagtgttgtttagtgttgtctgTGTGTAAATGTAAATACAGACCAATAGTTAGAGAGATATGCTCAGTATGGATTTAAGAAATGGCACTACCCATACTGGTAAATGTTCTTCTTTGAACAATCACATAATATCTTCAACTAGGCTATACATGTGTAATAATAGTATTAACTAAATCAATAAATCACAATTATAGTTACAACTGTAAACAACAGGCTTATCAATAGTGTGCCATCATTGTACCACAATCTAAAATGTTTTCCCTGAGGCTCATAGCAGAGGGACCAGGTTCAGTACATTCCTAACAGagttcagagagagacagattggaggTTCCATTGAGCATTGTAGTTTTATGAAGGTCTATGTTTAATTTAAGAATATGTTAAGACATAATAATTAAACATACtccatttatatttattttccatttataTTTATTCTAAAACTATTTCTTGTAGATTTCTGAAATTGTAgcattgtttttgtatttatcaGGATCCACATTAGCTCTCCCCAATTAGCCCATTAGCTCTCCCtgttggtctagtggttaggatttgGAGCTCTCACTACCGCagcccgggttcgattccgggTCAGGGAATGCAgaggtctaatgcactgcatcacagtgctagaggcgtcactacagacccgggtttgatcccaggctgtatcacaactggccgtgatcaggagtcccataggttggcgcacaattggcccagcgtcgtctgggttaggggagggtttggccattgtaaataaataagaatttgttcttaacggacttgcatAGTGAAATAAAAaagctgccaaggcagcaactactcttcctgggttccaaacacattaaggcacatacacacacacatcacatataaaacaaaagataaaacattACAACATGTAACattactacaccactacatatctacaatagaaaatgtataataccaccatacaacaatattacaatgtgcgTGTGTGGAGAGTGTATGTGGTAGCGCTTGTGCGTAtgagtgtgtgtctcttcactgtcttcagCTGTACTTTAAtctgtttttaaatctgattctactgcttgtatcagttacctgatgtggaatagagtttcatgtagtcatggctctatgtagtactgtgcgcctcccatagtctgttctggacttgtggATTgcgaagagacctctggtggcatgtcttgtgaggtatacatgggtgtccgagctgtgtgctagtagtttaaacagacagctctgtaCATTCAGCTTGTTAaaacttcttacaaaaacaagtagtgattaatgaaaatgtctgcactcactactgtaagtcgctctggataagagcgtctgctaaatgactcaaatgaaaatgtatgtcaaattCTCCTCTATTTTTAGCCATGAGATATTGACATGcttattattaatgttagctctacGTGTACATTTAAGAGCTAGCCGCGCTGCCCTGTTCTCAGCCAGTTGtaattttcccaagtccctctttgtgtcACCTGACcgcactactgaacagtagtccagctgcgacaaaactagggcctgtaggacctgccttgttgatagtgttgttaagaagaacTGCGCTTTATTATGGGCAgatttctccccatcttagctactgttgtatcaatatgttttgaccatgacttGCTCAATTTAcatattattcattacaagatttagttgttTAGAGAAATGATTTGtcacaaatacaatgcttttagttttttttttttacatttaggactcatttattccttgccacccattctgaaaataactgtagctctttgttaagtgtccTTGCAGTAGATGTAGGCTTTTTGTTTCAATTACTCATTATACTGTAAATATGACTTGTGAGCTGTGACTGACATCTTTGTCCATTGACATTTCAGTCATTAAATGCATTATTTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050209 lncRNA downstream 3711 23930604 ~ 23947305 (-) True G1791207
TU2050208 lncRNA downstream 21011 23929722 ~ 23930005 (-) True G1791206
TU2050170 lncRNA downstream 46944 23836732 ~ 23904072 (-) True G1791168
TU2050152 lncRNA downstream 82180 23840892 ~ 23868836 (-) True G1791153
TU2050156 lncRNA downstream 110448 23822379 ~ 23840568 (-) True G1791155
TU2050320 lncRNA upstream 60996 24035538 ~ 24036176 (-) True G1791293
TU2050323 lncRNA upstream 76758 24051300 ~ 24051562 (-) True G1791296
TU2050324 lncRNA upstream 77071 24051613 ~ 24051828 (-) True G1791297
TU2050328 lncRNA upstream 99261 24073803 ~ 24074051 (-) True G1791301
TU2050330 lncRNA upstream 100809 24075351 ~ 24075573 (-) True G1791303
XM_021579917.2 mRNA downstream 12294 23933860 ~ 23938722 (-) True LOC110502014
XM_021579894.2 mRNA downstream 115369 23803577 ~ 23835647 (-) False appb
XM_021579896.2 mRNA downstream 115369 23803577 ~ 23835647 (-) False appb
XM_036959553.1 mRNA downstream 121952 23803577 ~ 23829064 (-) False appb
XM_036959571.1 mRNA downstream 162403 23776064 ~ 23788613 (-) True LOC110502024
XM_021579905.2 mRNA upstream 47845 24022387 ~ 24041358 (-) False LOC110502010
XM_021579906.2 mRNA upstream 47845 24022387 ~ 24049343 (-) False LOC110502010
XM_021579903.2 mRNA upstream 47845 24022387 ~ 24050582 (-) False LOC110502010
XM_021579904.2 mRNA upstream 47845 24022387 ~ 24050582 (-) True LOC110502010
XM_036959586.1 mRNA upstream 78720 24053262 ~ 24072305 (-) True LOC110502071
TU2049906 other downstream 490656 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 781653 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1531518 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2130071 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3495033 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 352187 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 874049 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 882282 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1011417 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1736031 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile