RNA id: XM_021579903.2


Basic Information

Item Value
RNA id XM_021579903.2
length 2287
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110502010
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24022387 ~ 24050582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGATTCGATTAGGATCCTGGTGGAGTATCCTCTCGTGTTTCTGGAGCAGGAGGCGGGTCTTTGGAAAGTTGGAATGCCTTGGAAGTTTTCCTGTACTTTACAAAGATGTTGAATATGGACACCTGGCTGGTAGTGTCCCTGTTCGTGTTTGTCCAGCTCTTCTTCAGTTTAGCGTATGAAGGGTCGGGATACTATGGCTATGGAGATGATGAAGATGCATATGCTCGTAGAAACGGAGGGACCCCTTGGTGCGCGCCCATCAAGGTGAAGCATGGCGACGTGAGTTGTCGGAGTCCTGGGGGGCAGTATTATAAGAACGTGATGGGATCGCGCTGTAAGATCCGCTGTAAGAGGGGTTACGAGATGCAGCAGGGACACCCAGAGGTGGTGTGTATGGCCAGCAAACACTGGTCAGGAAACTACGCCTGCAGGGAGATCCGGTGTCCTAAGCTACAGATGCCTGCTAATGGTGGCTATAAGTGTTCAGATGGATCCTACTTTAACTCCCGCTGTGAGTTCTTCTGCTCCCTTGGATACACTCTGAAGGGGTCCAAGACTGTCACCTGCCAGTACCACAAGACCTGGACCTCAGGGGAGAGTGCCTGCATAGATGTGGATGCCCCAGTAATAAAGTGTCCTAACCTGAAGGACAAGATGGCAGAGCCTGGCAAGCTCACTGCCAGGGTTACCTGGGACACACCGGAGGGCAAGGACACGGCCGATGGCATCCTCACTGATGTGATCCTGAAAGGGAAGCCTCCTGGACACTTCCCCGAGGGGCTCCATAAGATGTCCTACACCGTCTATGACCGCGCCGGGAACAAAGGCAGTTGCCGCTTCTCTGTCAGAGTACGAGTGCGTCGCTGCAGCCCCATCACCCCTCCAGAAAATGGCTATATGAAGTGTGACAGTGATGGAGATAACTACGGAGCCACCTGTGATTTCAAATGTACAGGAGGGTATGAACTCCAGGGCAGTGCTGCCAGGGTGTGCCAGTATGGACTCACCTGGTCAGGCACGGAAACCAACTGTGCAGCTATGAACATCAACGTGGGGGTGCGTACAGCCTCAGGTCTGCTGGACCAGTTCTATGAGAAACGACGCCTCCTCATCATTTCTGCTCCCACAGCTGCCAATCATTACTACAGGTTCCAAATGACTAATCTACAGCATGCCCAGTGTGGTCTGGATCTCAGGCATGTGACGGTGATTGAGCTGGTCGGGATTTACCCGGCACAGATCGGCCGTATCAGCCACAGACTCATCCCCCCAGGGCTGGCTCTACAActccgGTTACTGCTCCAGATCTCCCATAATAACTTCAACATGGTGATGATTGACAAGCAGGGGATGGACAAGGAGCGCTACACATATCCCATCACCTCAGCCCAGATCTTCACCACCATTGACACCTGGCAGGGACGCATGGATGAGATGGTGCTGCAGCAGGAGGCAGGCCACACCTGCCAGTAGTACAACGCCTCAACAACACCCCTCActaacacccccaccccaacaccATCTCCCCAAAAAAGCCCACCATTCCCAATTGTACTCCTCAACGCACCCTATTTCCTTCACCCTATGGACAGTCCTTCTCACCCCCTCAATATCCCTCCAAGTCAATAATTAAACCCTACCGTTGCTTAATATTACTTCCTGAACCCAactcccatcctccagttccccATAGCAGACCACAGCTAGTTAACGTATCCATCAATAAGTCATTGAACCCTCTATTTCCCACCAATGTGATGTCTTTCAGTTGAAGTGCCATTCTAATTGTAAGAAGACAGGGGGTTCAATAGTCACTACTAAGTATGAATCATTAGTATCGGAATGTCTGATTGGAGTTTGGAGCTGTGGAGCATTGGGACCAGGCTAATTAGAATGGAAATATAACTCACTTTCATCACTGCATCCTACAGCAGTTAGAGGTCCTGGGCAGAGTGGGTCATCACAATCATATTGATTCTTGTACTCGTCAgtcttgttttttgtttgttttttaaagctTGGACACATTTTACTATTATTATGATGTTTTGTATAATaactattttctttttttttaagatATGAAACTGGAAAAATCCTTTAGCTGTTTTATATTTATGTTTCTCAATTCTGGTAGCAGTGTTTTAATTAGGACATTAATAATAAGCACtcgggaatgtgtgtgtgtgtgtgatgtgacagCCAGTGATGCTGGTCCATCAGTACACTGCTGTTCGTTCCCTTTGATTTCACACAACCATGATTAAATAGCCCTCTTAAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050220 lncRNA downstream 47845 23951016 ~ 23974542 (-) False LOC110502070
TU2050230 lncRNA downstream 47845 23951016 ~ 23974542 (-) False LOC110502070
TU2050234 lncRNA downstream 47845 23951016 ~ 23974542 (-) False LOC110502070
TU2050224 lncRNA downstream 47845 23968775 ~ 23974542 (-) False LOC110502070
TU2050240 lncRNA downstream 50255 23968775 ~ 23972132 (-) True LOC110502070
TU2050323 lncRNA upstream 718 24051300 ~ 24051562 (-) True G1791296
TU2050324 lncRNA upstream 1031 24051613 ~ 24051828 (-) True G1791297
TU2050328 lncRNA upstream 23221 24073803 ~ 24074051 (-) True G1791301
TU2050330 lncRNA upstream 24769 24075351 ~ 24075573 (-) True G1791303
TU2050276 lncRNA upstream 78526 24129108 ~ 24138203 (-) True G1791249
LOC110502070 mRNA downstream 63828 23952575 ~ 23958559 (-) False LOC110502070
XM_021579917.2 mRNA downstream 83665 23933860 ~ 23938722 (-) True LOC110502014
XM_021579894.2 mRNA downstream 186740 23803577 ~ 23835647 (-) False appb
XM_021579896.2 mRNA downstream 186740 23803577 ~ 23835647 (-) False appb
XM_036959553.1 mRNA downstream 193323 23803577 ~ 23829064 (-) False appb
XM_036959586.1 mRNA upstream 2680 24053262 ~ 24072305 (-) True LOC110502071
XR_002470286.2 mRNA upstream 31514 24082096 ~ 24085731 (-) True LOC110502032
XM_036959568.1 mRNA upstream 88082 24138664 ~ 24141447 (-) False LOC110502019
XM_021579924.2 mRNA upstream 88082 24138664 ~ 24141570 (-) False LOC110502019
XM_021579923.2 mRNA upstream 88082 24138664 ~ 24141597 (-) True LOC110502019
TU2049906 other downstream 562027 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 853024 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1602889 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2201442 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3566404 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 276147 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 798009 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 806242 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 935377 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1659991 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile