RNA id: XM_036959586.1


Basic Information

Item Value
RNA id XM_036959586.1
length 7364
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110502071
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24053262 ~ 24072305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtattgaccgaactgaggctggctggtgtccgagttaactgtgaagaccgctagcagtggctaactgactaatGGGCCTAGCTCAAAAGCAAACAGAtagtaacagatccataccatgttgggtgaggcgggttgcaggagagtatattcagtccgtagatggaaagtgggattaaaatataTACCAAATATATACGGGAGGAAAACTATTATttacacgggacaagacaaaacacacgtccgactgctacgccatcttgggaaAAAATGAGCATGTGTAGGGCTGTGacttcaatcaaatcaaatgtatttataaagcccttcttacatgtcataaagtgctgtacagaaacccagcctgaaaccccaaacagcaagcaatgcaggtgtagaagcacagtggctaggacaAACTAGCCAAAGACTTGAATGGAATATGACTGAAGGAGTGGGATATTTATTTTTCATGTGTCTCTTTTTTAAATTTTGTATATCGTTTTTTCCCCTTTCCAACTATCGATATTTGTTCCATAGTTTACCAtccgtacagtaggtggcggcatgcatcTCTAACGATTATTTGCGGACCGCcataataccatagaagaagaaggTTATTTCGGTCGAGGAACGTCACCTGCGTCTGTCTGTAAGGTGTTCCGAAGCCAGGGAAGGGATGACCGGCGAGACGGAGGCTGATATACCTGAAACGGGAGCAGTCTTCACCTTTGGGAAGAGCAAGTTTGCTGATAATATGCCCAGTAAATTCTGGCTGAAGAATGACCATCCAGAGGAAATCTCATGTGGGGGGGATCACACTGCTGTCATAACAGGCCATGGCAGGCTGTTCATGTTTGGAAGTAATACCTGGGGTCAGCTAGGACTTGGGTCAGAGATCAATGTCAACATCAACAAGCCCACCGCTGTGAAAGCGTTGAAGTCTGAAAAAGTTAAGTTTGCATCATGTGGGAGAGACCACACAATAGTGTGCACATGGAGTGGGCGTGTTTATGGTGCTGGCAGTAACCAGGAGGGGCAGCTTGGTTTGGGACACTGTGACGACACAAACACCTTCCACCTGCTTCATCCTTTCTCCGACCATGCACCCATCAAAATGCTTGCTGCTGGCTGCAACACCTCAGCTGCCCTAACAGAGGACGGCAGGCTGTTCATGTGGGGTGATAACTCTGTGGGCCAGATCGGTCTGGGCACAGAGAGCTACACCTCAGAGCCCAGAGATGTGATGGTGGGACAGCCAGTGGCCTGGGTGTCTTGTGGATACCACCACTCAGCGTTTGTCACAGTGGATGGGGACCTCTACACGTTTGGGGAGAGTGGGAGCGGAAGACTGGGGGTATTCCCAGACCAGCTAGCCAATCACAGAGTCCCTCAACGTGTGGAAAGCATCCAGGACCCGGTCATCCAAGTGTCCTGTGGAGGGGAGCACACAGTGGCACTCACAAAGGACAATGTGTACGCATTTGGGCGGGGGCAGCATGGGCAGCTAGGCCATGGGACCTTCCTGTTCGAGGTACCTTTGCCAAAAGCACTGGACCACTTCCGGAATGGCAGAGTCAGTCACGTAACCTGTGGAGAGAACCACACTGCAGTGATCACAGACAGTGGGATTCTATACACCTTTGGGGACGGTCGCCAGGGTAAACTAGGACTGGGGGAAGAGAACTTCACCAACCAGTTCAGACCAACACTGTGCCCACGCTTCCTCAAATACAGTGTCCAGTCAgTGGCATGTGGCGGCTCTCACATGCTGGTGCTGGCTATGCCCAGACTCCCAGAGGTTGAGGAAGTGGTGATAGAGGAGGATGATGTTACAGAGAGCATTCTGGAGTCTCTGGAGACCTACACCGAGCTGCTCCTGATGGACCCCTCCTTCCTGATGCCCAACTCACAAACCACACCTCCTCTCTGGACCCTGTCTGCTAGGGCCCGCCGCAGGGAGAGGGAGAGTTCTCCAGAGCAGTTTGGCCAGATGTTCCGTAACCTTCCGCCTCTGATGTCAGGCTTCCTCAACACCTCCCTGCCCCTGTCCAGAAATATCCGCATCTCCAGAACACCATCTGAAGACCTCTGCACCTCCTCACTGTCCTCCAATCCCTCCTCAAACGACCCCCCCAGCCCCTCACTCTCCCTTAAATCCAGATCCAAAACCCCATTAACACCGTCACCCAAGTTCATATTCCCAGACCCTCCTAGCCCTTCACTCTCCTCCAAGTTCTCCCCTAAGAAGAGGCTCAGCCCATCAAAATCCCCCAAATATGCATCTAAAGAACACCTCACCCCCCCACAGTCCTTTAAATCCACACATAAACTCATCCCCACCTCCTCAGTGTCCCCTAAACCCTCCTCTGTAAAGCCCACAGATGACAAACAATCCTCCAAAATGCTGTCTGAGGGTCCCACCACACCACAGACAGAGAGGACCAAGGACACTGTGATAGAAGCAACTGACAACCGGATGCTCATTGAGAATTTGGAGAAGAACATGGATGAAGAGGACAATAAAGACATGTTGCCAGACCTGGCATTACCATCAGGAGGAGATTTTGGCGATGAGACTGGGACTACATCTGCAGAACAGAAGGATAAGGAACATAAAAAGGGTCGGGCTCTGAGGAGAGCTGTTAAGGAGGCAGAAATGGAGGTTGAACAAGCCCGGGCCAACAGGAAGCCGCAGCTACTTTCTCATAAGGCCCTTCCCACCGAGCTTCTGAGAGGCTCCAGCTTGAGTTCATTAAAGGCAGAGGGCACGCCCCCAAAGAGCCCCAAATGCTTAATGAACCCTCAGACCCCAGCCAGCGGCAAGGAAAACATTGTCTTGACAGGAGAAAATTCTGGCATCAAAGTGAACACCAGTAAACTGACAGGTAGTAATCTGCAAAGCACAGGTAAAGCAGGGTCTAAACCAATTTCACCAGCAAAGAAACAAAGCAAGTTATCCGTATCGAAACCTAGCACTCCTACACACAGCCAGATCCAGATATCTGTGTCTAAACCCAGCGCTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACCTTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGGTCAAAACAAACTGTCTGAATCTAAACCCAGCACTCCAAAACATGATCAAAACAAGCTGTCTGAGATGAATAAAGGTACAGAGATGAAAGGTAAAGGCCCTGTAAAAGTTCAAGGTAAAGAGGCTTTCAAAGACAAGAAATCTAAAATTACAGCAGAAGATACTAAAACAATTGAAGTTCAAAATAAACCACTTCAAGAGATCGTGTCCCCTCCAGTCAAAGTTAAAGGTAAACCTGTGGAAAAGGAAACAACTCCAATTAACGCTACTGCTGAAACCATTCCTTTGAAAGTAAAGAGCATTCCCAAGAAGATTGTAGATGATAACAAACCATCTGAATGTAAAGGCACTCCAATAAAAGCAAAAAAGAAGGCAAAAGAGGTGAATGAAGAGAAGATGGAAGAGTCTATTACTTTCAACGAGTCAGGGACAACAGTGGGGAACAAAATGGCAGTTAAAGATAAAGGCAAAGAAAAAGAAAGTGCACCCACCAAAACAAAAAATGTGCCCAAACCAAAAGATGTTGAAGCGAAACTAACTGAGTTAGAGGGAGCCCCAGTGAAACTGAAAAGCAAGCCAACAGAGGTTTCCAGCCAAGCAGTCTTAGTAGAACCTACCTCAAAGGCCAAATCACCAGTCACATCACTCTCATTATCAGATGCACTACCTCAAAATGCTGGAGATAAGAAGTCAACAAAGTCACTTGTTGTCTGTCAGGTCAGGGATAGAGTGGAGGTCCCAGGGGAAGATGCCTTTGATGAATCCCAGGAGGGGAAGCCTAGCTGGGGAGGATTTCTCAGCGATGCAGCCTCTCTCCTTCCAGATGTGGGGATGGCGGGGACAGCCATGGGGGTCCTGAGTGAGGCGGTGACCAGCGTGAGGGGGATTCAGTCGGAGAGTGACACAGACACTTCTATCCCTCCTCGGCGGTCCAGCCGGGTAGAGAGGTTCACCAAACAGAGCGCCATCACCCAGCCTTCCTCCACATCACCCTCTTCTTCAACATCAGATCCAAGCACAGCTGAGCAAAGCAAGAGGACTGACACCCGCATCGGCACCCTCAGGAATTCTGATCGGGAAGTGGGGAGCAGGATTTTTGAGAAGGACCCAGAAACCACAGAGGCTGCTAGCGAGAGGTCAGGAGGTCAGGCCAAGGTCGATTATGATGAGAACTCTAGTAGTCAAAGTTCGGGAGCTGAGGATGATGAAGATAAAGAGTCCACAAAGAGACATGGAGATGGGACAGAAATGGAGAGCACCAAACAAGAGGAAAAAGAGGATTACAGAAGTGTTAAGGGTCTGGAAGATAACAGTGAAGACAGTGATACTGTGGCcagcggagagggagaggagggtagagaagaAAAGAGTGAAGACAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGAGAGCGAGGGCGCAGAGGCAGAAGAAAAGAGTGAAGACAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGACAGCGAGGGCGCAGAGGCAGAAGAAAAGAATGAAGACAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGAGAGTGAGGGCGCGGAAGAAGAAAAGAATGAAGAGAGCGAGGGCGCGGAAGAAGAAAAGAGTGAAGAGGATGCGGAGGCGGAAGAAGAAGAAACGAGTGATAGTGTGGGGacaggagggggggaggaggaagacgagAGGTGTGAGAGTgaggggacaggagggggggaggaggaagacgagAGGTGTGAGAGTGAGGGGACAGGAGAGTgggaacagggagagaagagTGATAGTGATGTGACTAtaaagggggaggaggaagaagagaaaatTGATGAGGGCACAGtacagggggaggagaaagaagagaagagtGATAGTGAGGGGACAAGTGATGGGGAGGAGAGCAAAGAGAGTGATTCTGAGGCAAgcctagaggaggagggagacgagACGAGTGCACagagtgagggggaaggagaagagggCGAAAGTGGTTCTGGGacaagtagagaggaggagatgagtgaAGAAGAGTCCAGTGATGAAGAGAGTggggataaagaggaagaggaggagagcaaTTCGAGTGAGTATGAAAATGAGGAGAGTGGTGATGAATCCAGAAGTGAGGCTGAGAGCAAGAGTGAGGTATCAGCAGAAGAGAAAGAAGATAAACAAGCAGAAAGTAAAGCCACTGAGTCagcagaggaggaaggagagaaccaagaagaggaagagagtggagcagaggaggaaggagagaaccaAGAAGACGAAGAGAGTGGAGCAGAGGAGGTAGGAGAGAaccaagaagaggaagagagtggagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGACGTAGGGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGGGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGACGTAGGGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGATGAAGAGAGTGgagcagaggaggaaggagagaaccaAGAAGACggagaggagaaggaaagtAGTGAAAGTAAAGAAAATGAGGAGGAGGCAGGCGTaagtgaggaggagggggaggaagatgaAGAAAGTGGAGAAGGTGAGGATGATGCAGGAGAGGGGGAAGCAGTTGAGGGTGAGGATGAAAAGGAAGGTGAAAAGGATGAGAACAACGAAGttgaagagggtgaggagggacGAGAAGATGATGAGAAAGAAgccaggggagaggaagaggttgaAGGTGgaaaaggtgaggaggaggaggaagaagaagaagaagaagaagaagaagaagagggagacaAAGAAGCAGAAGGAgaaaaggaaggagaggaagagggagaggaggaggaagaagaaagacagcaaggagagggggaggatgaaggaaaggaagagggtgAAGAAGAAGAGGAAATTAAGAATAGAGAAGATCAAGGAGAAGGAAAGGATGAGGAtatgaaagaaagagaagagaataatgagaagaaaggagaggatgagagtgAAAAGGGGGATGGTGAAaaacaggaagaggagaaagaggaaagaagagtgcatgaagagagagatgaggaagcaAATAAACAAAAAGAGGAAAGGGAGTGgcaagaggaggaagatgaggaagtgAAGGGAAAAaacggggagggggaggagaaggggggaggTAAAAAAGAAGGGAAAGAAAATAAGACAAGTGATTTGGAGGTAGaacaagaggaggaagaagagggcgCATGTGAACAGAAAGGGGAGATGGATGAGGAGGAaacgggagaggaggaaggggaaggagaagaagaggaagaggagaaagatagtaaaggagaggaagaggaggaagagggagaggaagaagaagagggagagggggaggaagaagaagagagaaaatcACAGAAAGGGATAAAGAAAGGGTCACAGAGCGTACCACCTAAAGCAGCTCCCCCCAGCAGGAAAGGGAAGGAAGAGCCCCCAATGGAGAAACCCAAACCACCGGCCCGCACCAAGCTGAGGACCACAGGGGGAAAACAGGCCAATGGAACCCAAGAATCCCAACAGTTCTGGAACAATGTCTTACCCCAGTACCTGGAGCTGAAGTGAAATATACTGGACATCAATGGTTCCCAATTTTATTTGGGTCAGAACCCATAACCTGACTGTTAATAACAGCTGGAATGGGTCTGGACCTCAGAAAACTAAGCCAGGTGCTCAATATACAGCACGACCCTACGTAAACTCCTTGAATTTAATCAATATCTGCATACAATTTACACAATATGCCCACTGTACTGTAAGGTACTGAACTGAGTGTACTCatgcactatactgtactgaattgtaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050324 lncRNA downstream 1434 24051613 ~ 24051828 (-) True G1791297
TU2050323 lncRNA downstream 1700 24051300 ~ 24051562 (-) True G1791296
TU2050229 lncRNA downstream 15006 23951016 ~ 24038256 (-) False LOC110502070
TU2050320 lncRNA downstream 17086 24035538 ~ 24036176 (-) True G1791293
TU2050220 lncRNA downstream 78720 23951016 ~ 23974542 (-) False LOC110502070
TU2050328 lncRNA upstream 1498 24073803 ~ 24074051 (-) True G1791301
TU2050330 lncRNA upstream 3046 24075351 ~ 24075573 (-) True G1791303
TU2050276 lncRNA upstream 56803 24129108 ~ 24138203 (-) True G1791249
TU2050373 lncRNA upstream 145562 24217867 ~ 24218370 (-) True G1791344
TU2050266 lncRNA upstream 247137 24319442 ~ 24324733 (-) True G1791242
XM_021579903.2 mRNA downstream 2680 24022387 ~ 24050582 (-) False LOC110502010
XM_021579904.2 mRNA downstream 2680 24022387 ~ 24050582 (-) True LOC110502010
XM_021579906.2 mRNA downstream 3919 24022387 ~ 24049343 (-) False LOC110502010
XM_021579905.2 mRNA downstream 11904 24022387 ~ 24041358 (-) False LOC110502010
LOC110502070 mRNA downstream 94703 23952575 ~ 23958559 (-) False LOC110502070
XR_002470286.2 mRNA upstream 9791 24082096 ~ 24085731 (-) True LOC110502032
XM_036959568.1 mRNA upstream 66359 24138664 ~ 24141447 (-) False LOC110502019
XM_021579924.2 mRNA upstream 66359 24138664 ~ 24141570 (-) False LOC110502019
XM_021579923.2 mRNA upstream 66359 24138664 ~ 24141597 (-) True LOC110502019
XM_021579897.2 mRNA upstream 69533 24141838 ~ 24147526 (-) False naxd
TU2049906 other downstream 592902 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 883899 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1633764 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2232317 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3597279 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 254424 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 776286 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 784519 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 913654 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1638268 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile