RNA id: XM_021579923.2


Basic Information

Item Value
RNA id XM_021579923.2
length 2075
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110502019
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24138664 ~ 24141597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTTGTTTCTGATATGATGCGCATGCGCATACACATGTACAGTTCTCCACGTTGGACCAGACGCAATCAATACATAGTTGAGTTACAAGATTCTCCAGTTGGATTGAATACATTGTATGAAGTTCATTAAACGGCAAATATAAAGTTGCTGCTTTGTGTGGACTTCGACAGAAGAACATGCTAAATCCGGCAAACGGTGACCCGGTCCACGTCGTTACAAATTATGTGGAAGAATATTTGGACTTGGTCGAGTCACTACCATTCGACCTACAGAGGAGCGTGTCTCTTATGAAAGAAATTGACGCAAAATACCAAGATGTCCTGCAGGAGCTGGATGATGCTTATGAACGCTACCGTCGGGAGTCTGACCCTCTCCAGCGGCGCAGAATGCAGCTGTCCATCCAGAGAGCGCTCATCAGCAGCCAGGAGCTAGGAGATGAGAAGATCCAGATTGCTGGGCAGATGGTGGAATTGGTGGAGAACCGTAGCCGGCAGGTGGACTGGCATTCTGAGCTCCTCCACACCTCCCAGGAGATCCCAGAGATCCATGTACCCACATCAACTGCTATGACGACGACTACAGCCTCCATGTCAACGTTAGCAGTGACAACCACACCAGGCAAAGTGGGTCACCACGACAAGAGGCGTGACGAGGCAACGCCAGGCTCAGTCGGTGGAGGGGAAAAGTCTGGCGGGAAACGTTCGCGGCGGCAGAAGAACGGAGAGAACCGGGAGAGCTATGGAGGCATGGATCATGGTGATGAGGCAGGCATGGGGGCAGCCAGGGAAAAGAGGGCCAAAATGTCATCgtccaagaagaagaagaggtcAAAGGGCAAATCAGAGAGGGAGGTGTCACCCCCAGACCTGCCCATCGACCCAGATGAGCCCACCTACTGCCTGTGTGAACAGGTGTCTTACGGCGAGATGATTGGCTGTGATAACGACGAGTGTCCCATTGAGTGGTTCCACTTCTCCTGTGTGGGGCTACATCACAAGCCCAAGGGGAAGTGGTTCTGCCCCAAATGCAGGGGTGAGAATGAGAAGATCATGGACAAGGCCCTGGAGAGGGTGAAGAAGGAGAGGGCCTAcaacaggtagctagctagctgctctaCCTGGCCCAGTGAACGTTGTTTGTGGTCATGTTAGTGTTGTTTTTTGTTATTGTATTTTCTACTCCCAATTAGTATCAATGCTGTTTGAAAATGAAGAATTGGGGCCTCCCTAGTGGCACTTCAgtctaaggcgtcactacagacccgggttcaatcccatgctgtgtcgcagccagccgcgaccaggagacccatgaggcggcacacaattgtcccagGTTCTCCGGGTTAGGGGGAGgctttggccggccgggatgtccttgtcccatcgctctcTTGTCGctagttgtacggtgtttcctccgacacattggtgcggctggcttccgggttaagcaagcagtgtggcttggcagggttgtgttttggaggacgcatggctctcaaccttcgcctcttccGAGTCTGTACGGaattgcagcaatgggacaagactgtaactaccaattggatatcacaaagtTGGAGAGAATGGGGTTAAAAAGTACAAATGAAGAATTAGAAAGAGGGACTTGTCATTTTAGTAAAGGCTGTACTGTAAGATGGACATCCTAGTTCAGTACCACTGGTTTAGAGCAGATATGTAATACAGATTATTGTAGCCACACCAATGATTGACGCTAGTGTATCATGCATGCAACCATACTAGCCATATTGCTCCATAcgaacaaataaaacattttaaccaAGATTGCGTGCTGAAAGTCATTTTAGACATGTACTATATTACAAGGTGGCTTACAGATATGAATGCAATGTGCTTCCTATGTTGAATTGTCTTTGCATCATCTGTATTTACCATGGGATGTGACAAGAGCCATTAGTAAGGGCTGCTCTAGCAGCAAAAGTTGTTGAGATGGTTAAATTGATAATACTCATGTTTGACTGATGGCATGGGGCCTGTAGTTGTGAGGACAGTCACTTGTGACACCAGtaaaaaatgttatttaaatgCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050276 lncRNA downstream 461 24129108 ~ 24138203 (-) True G1791249
TU2050330 lncRNA downstream 63091 24075351 ~ 24075573 (-) True G1791303
TU2050328 lncRNA downstream 64613 24073803 ~ 24074051 (-) True G1791301
TU2050324 lncRNA downstream 86836 24051613 ~ 24051828 (-) True G1791297
TU2050323 lncRNA downstream 87102 24051300 ~ 24051562 (-) True G1791296
TU2050373 lncRNA upstream 76270 24217867 ~ 24218370 (-) True G1791344
TU2050266 lncRNA upstream 177845 24319442 ~ 24324733 (-) True G1791242
TU2050508 lncRNA upstream 228040 24369637 ~ 24370091 (-) True G1791474
TU2050840 lncRNA upstream 307598 24449195 ~ 24449517 (-) True G1791788
TU2050853 lncRNA upstream 378310 24519907 ~ 24541453 (-) False LOC110502073
XR_002470286.2 mRNA downstream 52933 24082096 ~ 24085731 (-) True LOC110502032
XM_036959586.1 mRNA downstream 66359 24053262 ~ 24072305 (-) True LOC110502071
XM_021579903.2 mRNA downstream 88082 24022387 ~ 24050582 (-) False LOC110502010
XM_021579904.2 mRNA downstream 88082 24022387 ~ 24050582 (-) True LOC110502010
XM_021579906.2 mRNA downstream 89321 24022387 ~ 24049343 (-) False LOC110502010
XM_021579897.2 mRNA upstream 241 24141838 ~ 24147526 (-) False naxd
XM_021579899.2 mRNA upstream 241 24141838 ~ 24147723 (-) False naxd
XM_021579901.2 mRNA upstream 241 24141838 ~ 24147986 (-) True naxd
XM_021579872.2 mRNA upstream 16396 24157993 ~ 24264287 (-) True LOC110501998
XM_036958967.1 mRNA upstream 377977 24519574 ~ 24711403 (-) False LOC110502073
TU2049906 other downstream 678304 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 969301 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1719166 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2317719 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3682681 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 185132 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 706994 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 715227 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 844362 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1568976 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile