RNA id: XM_036958967.1


Basic Information

Item Value
RNA id XM_036958967.1
length 9771
RNA type mRNA
GC content 0.52
exon number 35
gene id LOC110502073
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24519574 ~ 24755850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTATCTCTCTGAATGTGTGGAGCATTGCGTCAGGGGGGTGTGTTGCACTGGGGGTGGGTCTACCGCGCTGTCAGTCAGTGACGCACACTGAGCACGTGCGCCGGTCATGGTTGGGGAGAGGTTGTGTGGTGGTTATCTGACCGATGGCTGGGAGAGCTGCAAGAGCTGCAAGCGTTGCAGCCCTGCGATGTTGTGTGTGCCTgctgagtgtgtctgtctgctctgcTGCAACCCGAGTCCTATAGTGAATAATGCAGAGCAGAGCAGCTGAATGAATAATGCATTGTGCAAGTTTACTAGCACTGCTGTTAGCTTAACCAGAGCTGGAAGGAAGGAACCTGtggctgcctctgtctgtctcactctctgactatctgactatctgactgactgattgactggtaCAAGGAGAACATGTCCCACTACCATTTTCTCAAATGCTgtTGTTTTCAGCTATGTAACGTGTTTCGTCAGAACATGGAGATCGACCAGTGTCTGTTGGAGTCTCTCCCGTTTGGCCAGCGCCAGCGTCTGGTCAGGAGGATGCGCTGTGACCAAATAAGGGAGTACTATGAGCGGGAGAAGACCCTGCAGAAACTGGGAGGAGGAGTCAAGGTAAAAGCACCGCCCACCAGCCACATGAAGAGACAGAGCATTCGCTTCAGCCTCGGTGACATCATACAGGACGCCATCGTACGCCACGACGACAAAGAAGTGCTGCGTCTACTGAAGGAGAGAGCTGACCCCAACACACCTATCTCCTCCGGAGGATCTCTTCTACACCTGTGTGCTCGTCATGACAATGTGTTTGCGGCTGAGGTTCTGATCGAGCGAGGGTTAAACGTCAACCTGCAGGATGAGGACCTCTGGACAGCCCTGCacatagcgtgtgtgtgtgaccacgCCGACAtggtgctgctactactgctgACTGGGGTGAATGTTCTACTTCAGGATGTGAATGGAAACATTCCACTGGACTACGCCGCTGAGGGAACCGAGACCAGCTACATCCTCCGAAAACACCTAGAGGAAAACGGTATAGATGTGTTGTCCATGCACACCATGCGTACCCAGAGGCCCAGCACCATGTTGTCTGATGTTCGACAGCTGGTCTCCAGCGGGGTCAGTCTCAACCAACGCAACAGCGACGGGGTTACTTTGctCCACATAGCGTGTGCTAGTGGCTACAGGGATGTGGTGTCTGTGCTGCTGGAGCACGGGGCGGATCCTCAGCCCTCCGACAACGGCTATTGGACACCTCTCCACCTGGCTGCCAAATATGGACAGACAAGCATCGTTAGCCAGCTGCTGAAGCACAGAGCAGACCCAACTCTCCTGAACTGCAACCAAGACAAGCCCTCAGGCATAGCAGCATCTGACCCCATCATGGCTATGCTGCTGAGAGCAGAGGAATGCTGGGTAGAGAGACTGAAGGACCCCTCTGTCCCCCCGCCACCTTCAGATGAGCGCTACGATGGAGGCGCACATGATCACACCATCCTCGTCAAGAACCTAACCCCCCTGTCCATGTCCCTCTCTAAGAGGGACAGTCTGTTGGAGAGGTGTGCCATGTTCAGTGAGGTGGGAGGGGGGCTGAGCAGACAACCCTCACTGGACAACGGTCTGGACGGACCTACAGGACCCTACAGCAAACTGGAGCAGGTGAAGCTGATGCCTCCGGCGCCTAATGATGACCTGGCGTCTCTCAGTGAACTCACAAACAGCAGCCTGCTCTACGAGATGCAGAAACGCTTTGGCAATGACCAGATTTATACCTACATCGGGCACATTCTCCTCCTGGTCAATCCTAACAAAGAGCTCCCCATTTACTCTTCACTGgtgaGTCAGTTGTATCTGAGTTCTTCAGGGCGTCTgtgctcctctctgcctcctcacatCTTCTCCTCAGCAGAGAGGGCCTACCACATGATGCTGCAGGAGCGACGCCCGCAATGCTTCATCCTCAGtgGGGAGAGTGGTTCTGGGAAGACAGAGGCTTGTAAACACATAGTGAGACACCTGGCAGTGAGGTCCAGCCCCAAAGGCTTCTCTCTTGAGCCCAGGATGAATCAAGTGAACTGTATCCTGGAGGCGTTTGGTCATGCCAAGACTCCCATGAATGACAACTCCAGTCGCGTCATCAAACTACTCAGCCTGCAGTACTGTGACAAGAGAAAGACACTACTCAGAGcgcGGATATACACATACATGTTGGAGAAGTCCCGGGTGGTCCACCTGCCTTGTCAGCAACACAACTTCAACATCTTCTACCTGATGGCTGAGGGCCTGTCGCCTGAAGAGAAGAGTGCCCTACACCTCAACAACGTCCTGTCTCACAGGTACCTGAGTGCAGGTGTTCCCGCAGAAGACTCCCCTCCTGTGGCCTCAGCTTCAACTCAGAGTAGAGACCGTCTCACTGCAATCAAACAGGCCCTCAGAGCTCTGGGCTTCAACAAACTGgagATGGACAGTGTGTTTATGCTGCTGTCAGTGGTGCTGCAAGTTGGGGACCTCAGCTTCATTTCACTGACAGACGTTGAGACCGCCTACCCCTCCAACATGCAGCTGCTTGAGCAAGtatctgGAATGCTACAGGTGTGTTCTGATGACCTTAGTTCTGCCCTCACCTCAGATGTGCAATACTTCAAAGGTGATGTCATCACACGGCGTCACACGGTGGAGATGTCACAGCACTACAGAGACCAGCTGGCTAAAGCCCTGTACGGACGCCTCTTCAGCTACCTGGTCAACAACAGCAACTACTACCTACAGGGACAGGACGACAACATGGGAGACCCTGCTCTTGAGATTGGAATCCTGGACATCTTTGGATTTGAGGAATTCCAGAGGAATGGATTTGAGCAGctGTGTGTGAACATGACCAACGAGCGTGTGAGGCTGTATGTCTCCGAGGTGCTGTTCCAGCAGGAGCAGGCCGAGTGTCTACAGGAGGCCGTCGCCATGGAGACGCTCCGGTCACCTGGCAACCAGCCTGCCATTCTAGACTTTTTCTTCCAGAAGCCTCAAGGTCTGCTGTCTGTGATGGATGAGGAGAGTCAGTCGCTGAGGCCTACAGAACAGACGCTCTACAAGAGACTACAGACACACCTCgacaacacacccacacacggcATCTCCCTGACAACCAAGGACGGCAATGGAAACCCCCCACCCATAGACCAGGGTCCTGCCTTCACTGTGAAACACTACGCAGGCCAAATGGCCTATGACCTCACAGGATCCCTGGTGAAGAACAAGGACTCCCTCCCCCAAAACCTGCTACTGGTTCTGAAGTCCAGTGAGAGTGTGTTGGTGCAGCAGTTGTTCCAGTCCAAGCTGACCCAGACTGGGTCTCTGGTACCGGGCCAAGCCAGGGTGGCTCTGAGAGGGCCCAAAGCAGCACTTCTCCTAAACAGGATGTCATCCCCCTCCACCCTGACCCCCGCAGGCCGCGAGCCTCGGAGGTACCTGGACCTCACCAAGctcTTGAAGAAGAAGGGAGCAACATCTTTCCTGCAGAGGCTGGAGAGGTGTGGTCCAGTTACGGTTGCTGTGCAGCTGAGGAACTCTTTGTCAGATGTGGTCAGTAAGCTACAGGCGTGTACCCCTCACTTTGTGGAGTGTGTGCGCCCCAACAGCAGGTGCACGGCGGACTGCTTTGACAGTTTCCACGTGTCTACCCAGCTGCAGTACGTAGGGGTGCTGGAGATGGTCCGGATGATCCGCTATGGCTACCCTGTACGCCTGCCCTTCAACGGCTTCCTCACCAGGTACAGAGACCTAGTGGACACCACTCTAGCTGGCAAAAAGAAGCTGTCCTCGGAGGAGAAATGTTGCTTTGTTCTGCAGCAGTGCAAACTCCAAGGATGGCAGatGAGCAGTAGTAAGGTGTTTCTGAGGTACTGGCAGGCTGACCAGCTCAATGACCGCTGCCACCAACTACACAGGAAGATCATCACCTGCCAGAAAGTGATCCGTGGCTGGCTGGCCAGACAGCGTGTGCATCATAGACTGTCATCTCAACAGACGGAGGACTGCAGTGTCCAGAGGTTCCTCCAGGGGGCAGAAGACCAGGGCCTGCACACCTACGACCACCTGGTCATCCAGAACGCCACCGACATCGCCCGCGAAAGCGACCACCAGCGCTGCCATGGCAACGGGTCACACGGCAACAGCCCGCCCCTCGGGGACAGGCCCGAGCCAGTTGGGAAAGAGGAGGACACACCCAAGAGGGTTGTGGAGAAGAGCAGAAGAAACCAAGATGGCTCGGTTAGTGGGGGGAGCCGGACTATCCGCCACCTCCGCTCCAGCTCAGTGCCCATCCCCCTGGCTATGGAGAACTTGGTACATTACAGCCCTGGACCATCCATCAAAACAGCCCTGCAGCAGGTGGCCTATAACAacgaggatgggggaggagggggagggctgGCGTCGCCACGGAAACAGCCTCCCCCCAAACCCAAGCGGGACCCCAACACTCGTTTGAGTGCGTCGTACGAGGCGGTCAGTGCTGGACTGACCCTGGGACCCTCGAGAGAGAGTCCCACCCCCGAAGGCTGCGGGTCACCTGCAGGGAGCCCCCCAAAAACACAGCTGTCACCTACGGATGCTCTGTCCAAGCCGCGGCCCCACAGTGATGACTACACAACCATGAGGAAGGTGCCTCCTCCCAAGCCCAAGAGGAGCCCAAACACCAAGCTCACGGGCTCCTATGAAGAGATCAACGCTGCCGGCATTAACCTCCTCCAGCTGCGCCCTGCCGACGTCAAACTGGCCCTGCTGTCCCgcgctgggggactggggggggtGATGCGGCACACAGCGTCTGTGGATGGCCCACAGGGGGTGACACTGAGCCTGCACCATGACCAGGATGAGGAGGATGTGTACATAGAGATGGTGGGGGCTCATGCCAGGAGTTACAGTCTGGGAGGCGGCCACCAGGACCCCCCCAACAGCCCCCAGCAGGGAGATGCCGAGGCCGTCTACGAGGAGATGAAGTACTTCCTGCCCGAGGAGGTGGGACTTCCGGTGGGAAACACGGTTGCCATGGCGACAGCTGCTGGGAAGTTGGAGGTGTTAGGGTTGATGTTAGGGTTGGGCTTGTCTCCCTCTCAGAGTGGGGAGGGAAAGAGGGCAGGGCTGGGGGGTCTAGCCACCACTATGGAGGCCCAAACATCCGCCACCGGAGGGGCCAGCAATATCCCTGCACCCTTCCCCAACCTGCTCCCACACCGCCCCCCTCTCCTGGTGTTCCCCCCCTCCCCCGTCACCTGCTCCCCTGCGTCTGATGAGTCGCCCCTCACCCCTTTGGAGGTGAAGAAGCTGCCTGTGTTTGAAACCAACCTGAACTACGCCGGCCCAGACAGCCCCCTCTCCCCCCAGTACTCCCGCCAGCGTGctgactcctccccctctctctccgtcctcctccCAGACAagcccactcctcctctcacccctcctcctcctccccccaatgccctgcctcctccctaccgCCCCCCCTCCCACTTTCCTTTCCCCCCAGAGTCCAGCATCCTCTCCCTTACCCGGGCTGCTTCCGTCACGGGAGGTGGCAGCTCGGACTCTCCCAaaccctcctactcctcctcctcttcctcctcctctcatagGGCTGGAGGAGAGAAGCCCCCTCCCTACTCTCCGGCCAAGTCCACCCGTCCAGAGCCACGCCGTTCCCACTCCTGCTCCTCCTCGCCCCTGCTGTTCAACCCAGCCAACGGGAGACCCCTGACCAGCCCTCAGCCAGCCCTGGATGAGCTCAACACCCTGTTTAGCTCTGGACGCAGCCTGCTCAAGAAGACCACCACAGGACgcaagatgagggagggagGTTTCAACTCCAACATCAACCTGCCAGGTAGAGAGGAGCACCCAGGCTCCACCCCCACCTCCTCGTCTCCGCAGCTACAGGACAAGAACGCCAACAACcacacccccccctccccaagcCCCACTCCCATTGAGAACGGCAACCGGCTGTCCAACGGGTCAATGGAAGATGAGGGTCACACAAAGTCAAACTCTTCCAGCTCATCGTCTCTGCACAGGCATATGGACAGCCATCACACTcagGTGATCCAGCGTCTACGTGGATGTGGGGGGGACGAGGCCGCCACCCTGGGGGAGTTGCTCCGCTGGCGCAGGACGCTGTGTGAGGGGCGGGCTGACTGGAGGCACCAACGGGACGTCAACGGAACACCACAAACCCCACCCACCACACTGGTCAGGGCTAATAGGAAGTCTTCTACATAGTGGGAGGATGTCCAACCTTGGATATGCCCACTTTCCATGTCTCACACTGCCTTTCTTGTCTGCCTCCTGCCACGCCCTCCTGCCCATGTCTGCCACCCCATTCAGCAAAGGACAGGTCTGAGAGAGAGGCATTTCATTGGCCAGGACTGCCCAACCCACAAGAGCATAACAGATAAAGGACGGAGAAAGGGAATATAGCAGCAATCAGGATccattttatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctaacaagcTGGATGTAGGCtaacagaggagaggactgtacaTACAATAGTTGCTATGTGGAATGAGGTTTGCctatgtgttttctgtctgtagTAAATATGGTGCACGTTCTCTCTCTATCAAAGCCTACCATGCAGTTACTGCTTACGCAACATCTCCCAGCCCAAACCCCAAACCCCAAAACATGGTGCTGATGTCACTCTGTGTGATGTTATATGTGTCAGGTGTGTGATGCACACTAGGATGAAGCTGCCCCGGCCTAGACGCTGATCTAGGGTCTGTTTTTGTCTTTACCCTCTGATGCTCTTGGGTAAGGTAagttgatcctagatctgtgcctatggGCACAACAGAACATGTGTGTACCCTTCCCTCCAGACATGTCTGAAGTTTACAAGCGAGCCAAGGCCTTTAAACATCTCCTGTGTTAAACCTCACTGCTCTGGCTTACAGACCAGTTATCATCTCTAGGACCAGGAggttttcctgaccatgtgatcTGACCAGGGAAAACTCCTGTCTCTAGTCTTCTGGACTCCTTCAGGTATCAGCTACCGCTTTAGCCTCATGCTACAAGGTGCTTTAGGTGCTTCTGTAACCCTGGCAACAATAGCTCAGAGTTCAGGGGTCAGGGAAACCTCAGCGATATCCCATGGTGCACTTGTTTCATCCCCAGCTAGCCAACAGCCTTTCGCTTTAGCGCGAACAGAACATCCACaacagtaaataaaataaaaacactggCAGATATTACTGACTAGGCAAGACAATAGCAGAGCTGTATTTTACAACGATGGCCATAGTAGCTAGTTCATGTAGCTAGATCACCTGTGATCAGATTGTATCAATGTCCTGTAAGGTTTTTACTGGGCTTAGTGCCATACAACGGGACTCTAGGCCAGTCAACCTCAGCTATGGCTGATGTATTTTACTGATGTGTTTGTGTAGAGCCAACGCACAACTATCTGTCGCAGTCCCTCAATTAACTACTTATCTAGACTTATTCTACAAACATCTCAGAGAAATAAGCTCTAAACCACAATGGTACTTCCTTCATATTAGCGTCCCATTTGATATGTTCTATCTTGTGTAAATCAATGTTAGGAGCCTGTACACTTTTCTGTACATTTCAAGGATGCAACTGGAGCACAACAGAGTTCTCATGTAAAGCTACCCCATCCTCCTCAATCACTCTCTTTATTTCCCTCCCAAACCCTGCAATATCCCAACACCCCCTCCAAGATACTGTAGGGGTCAGAGGGCATTGCCAGGGTAACCTCCCTGTAAATAATGGCCTATGTTTAATTGTCAAATGTTTTAATTTACTATATCAGAATAGCACAGAAATGGGAAGATGGAAAGGGATTTGGAGAATTGTCTATCTGGCAGATGGAGAATTATATGATTGTCTTGGGTTTAATGCAATGACTGAGGCAAAGAGAAGAGGTTTATTTTATAATGTGAACACCTTTTTTGCGGAATGATTGTCTACTACTATGAAACTTCtttatactgtatttatttagtttgtttgtttgtttccctGCGACACCATTGTAAGACAATATTACAGTGGCGAAAGACTGAGGTTTCCACCATTTGTCTGATGGTTGTTTGGATGATAAATTGCACAATATTTGGTGGGGTTTCCACATCGTAAAGGAGTAGCTAGAAGTTGCCCCTAACCACTGATATAGGATCAGATATTTTAACATCCCCCTAATGGTTACGGTTATGATTGGGGAGGGTAATCTGACCATGGTAAATTGGATGGGTGTGCCTCTGCAAGCCGTTGGTTCTTAGAAGATTGGTTTGACTGTAAAAGCCAGGAAGTATCAATAGCTCTGATTGATTTCTCATTTACACTGATCACCCTTCAACAGTCTGATTGATCCTGTATTAGGAATTAGCAGCGCCATCACTAGCGCGTCCTTGGTTGTTGATTGAgccgtgtgtgcgtgtgagtgtgtgtatgtgataagAAACACAACATTTTCTACAGAAATTGGGCGAAGATCACATCAAACATTGACTAGGAGTGAGCCACATAACCAGACCTTGTGAACACCAAAGCTCTGCTAACGACATTGGATTACAGTATTTCAAAGTGATAGTGTTAAGATAGCATGTCTATATGTGATTGGACGATGCTTTAGGATTGGAACGGAGGTGAAACAACACGTCTGGATAGAACAATACAGTTGGTCATATTGTAGTTCTACATCATGTACATATGACTATTGGACAGAGCTGCCACAGTGCACACAGTATACACTACTTACATtgagacagtaccagtcaataccaGTATCCTACACACAAAATAAATCACTTCATATAGGTAGGTGTACCACTCCTACTCCGATGTGCTGAGGTCCACCACTAAACATGGTTAAGGTTCgtcctgttttgtattgtgtctATTTATCCCATACTACTATGAATGATTTAGTGAAGCAGTGAAAacatgatgaggatgaagaggtATGCATACTTTTTTTAAGGCATTTCAGACAGGATGTTAGTTCTTTGTCTCTCTGCATGATCTGACCACTCATCATTTCCTCTTACCCACCGATGCACGGCAGTTAACGCTTGATATTTGAATATCCTTTTACCCTTTACACTGTGAATCACTGCACTGTCTCACACTGCCATGTCACACTGCCATTTCACACTGCCATTTCACACTGTCATTTAAGACTGCCATGTCTCCTATGCGCTTGTCACCCTACCATGTTTCCCCTTCCTAAAATACAGTAAAAGCTACACACATATGTCCCCCAATCCCGATCCCCAATGTGTTTTCTGACTTCACAACTGATCTAAAGAACTAGGTACTGCCATTTTTCATTCATAGTCaggtctccctctctttgtcatAAGGTTCCTAGACCAGATGTCTGGTGCTAAAGCCAGTGCAGAAGGGGCATTTTACTGTTCTCAGTCCATGTACAGTATTCCAATGATACATATTTTAGCACATAGGCATATCACAGCCTTGTTTTCATAGTTGTTGTTTTCTTCCCCTTCTTTttgacagacatacagtatattttacctGCATACATTGTGTTTGTGGAAAATCAGAATTATATACGTGttgtttcatgttttgtttccAATGTTTTATAAATACCTGTACAGCAATAAAGCACAATTGTGCCCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050840 lncRNA downstream 70057 24449195 ~ 24449517 (-) True G1791788
TU2050508 lncRNA downstream 149483 24369637 ~ 24370091 (-) True G1791474
TU2050266 lncRNA downstream 194841 24319442 ~ 24324733 (-) True G1791242
TU2050373 lncRNA downstream 301204 24217867 ~ 24218370 (-) True G1791344
TU2050276 lncRNA downstream 381371 24129108 ~ 24138203 (-) True G1791249
TU2051091 lncRNA upstream 120861 24832264 ~ 24832586 (-) True G1792026
TU2051102 lncRNA upstream 127820 24839223 ~ 24839788 (-) True G1792037
TU2051106 lncRNA upstream 131644 24843047 ~ 24843264 (-) True G1792041
TU2051426 lncRNA upstream 149694 24861097 ~ 24861333 (-) True G1792347
TU2051433 lncRNA upstream 164378 24875781 ~ 24876036 (-) True G1792354
XM_021579872.2 mRNA downstream 255287 24157993 ~ 24264287 (-) True LOC110501998
XM_021579901.2 mRNA downstream 371588 24141838 ~ 24147986 (-) True naxd
XM_021579899.2 mRNA downstream 371851 24141838 ~ 24147723 (-) False naxd
XM_021579897.2 mRNA downstream 372048 24141838 ~ 24147526 (-) False naxd
XM_021579923.2 mRNA downstream 377977 24138664 ~ 24141597 (-) True LOC110502019
NM_001124564.1 mRNA upstream 63315 24774718 ~ 24778935 (-) True tnfsf13b
XM_021579292.2 mRNA upstream 68002 24779405 ~ 24785002 (-) True LOC110501608
XM_021579294.2 mRNA upstream 388038 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 451786 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 519858 25231261 ~ 25234195 (-) True LOC118943630
TU2050435 other downstream 192447 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1059214 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1350211 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 2100076 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2698629 21790756 ~ 21820945 (-) True LOC110501594
TU2051421 other upstream 137188 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 145421 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 274556 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 999170 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2557259 27268662 ~ 27286095 (-) True G1794978

Expression Profile