RNA id: NM_001124564.1


Basic Information

Item Value
RNA id NM_001124564.1
length 2081
RNA type mRNA
GC content 0.49
exon number 7
gene id tnfsf13b
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24774718 ~ 24778935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTATACAACATTACAGTACAGGGTGcagacactgagacaggagagaagAAGGCAGGTCATGCAGCCtgtttgactacagaggaggCTGTCTGGGCCCTGTGATGGCATCTGCAGGTCCAAATCCCGAGGGTGGTAGACCTGCTTCCAGGCAGGAGTCTGGAGGTCGGAGGCTGTCCTGGCTGGTCCTGCTGCTGACTCTGGCAGCGGTcacctcctcgtctctctctgctctgtctctgtaCCACCTGCTGGCCCTTAGGGCCGAAGTTGAGGAGCTCCGGTCAGAGGTCTTCCGTAGGAGAGAGGAGCAACAAGAGGCTAGGCATGGAGAGACACTGCAGCAGATGAGCAGCAGAGCCAGAAGAAGCAGCCCAGACCATCCACACCCCCCTGACCCCCAGCCTGGGCTATCTTTCGTCAGGAAGAGGAGTGTGGGCACAGGAACTGAGAACTCAGTGTCTCAGCCTTGTCTACAGATGCTGGCAGATAGCAACAGGAAAACATTCCAGAAAGAGTTTGCGCTGGAGCCTTACACAGGGATCCCCTGGCAGGCGGGGCTTAGAAGAGGCTCCGCCCTGGAGGCAGAGAGCGACAGCATCCTGGTCAGAGAGGAGGGATACTACTTTGTCTACAGTCAGGTGTACTACATGGATACGACCTTTGCCATGGGTCATGTGGTGATCAGGAAGAAGAGGAACGTGGTGGGAGATGAAGCTCAGCATGTCACATTGTTCCGCTGTATCCAGAACATGAACCCTGTCTACCCATACAACACCTGTTACACAGGGGGTATAGTGAAGCTGGAGGTCGGGGACAGTGTGGAGCTGTTGATCCCTCGCTCTACAGCCAAAGTTTCTCTGGATGGAGACTCCACTTTCCTGGGCGCTGTCAGACTGGCCTGACCCTGACCAGGGGAGTTGGACTGGGGGGACTAGGAGATACAATTGCCATCATGTGGAAATGGACACTGCTGGTACTAGAAGTTTTGATCTGGTAGATACTGGTGGTGGTGTACAATAATTATTTTAAATGAACTATGGCTTCTGGGTCTGATAGCTACATTATCTATTCTACTATGATGCCATCTGCTTTACAGAGTGACTGAAGGACGGACGGACTCAGAATCATGGCCTATTACTGGAGAGCCTGGCTGATGATgccattgatgatgatgatgatgatgatagcaGTGTCAGCCTCTGTCACTGTGTGTGATCTGAAATGTTAGATGCTTATTCTGGCAGGTGTCTCACCATTCACTCATAAACTTCTTAAATGTTATGATCATATACAATACACACAGTCAAGACACAGTCCCAGCCATGACTACACAGTCCCAGCCATGACTACACAGCGCCAGCCATGACTACACTTTGATGCCTTGATGATCATTTTGACCACCTGCATACTAGTAAAATAGGCCCTGTTGTATTTCATGGTGTTGTATCCTGTCTATGACAATGTTATTGAATGGTGCAGAGTGAGTTGTCATCATTCTACCAGAAGGGAGCAGCAGCACTCAATTAATTGGTTTCCCAAGCAGCACCTGACCATGTGTTACAATAAATGCAGTTAATCACTATGGCTGGTGGTAATGATAGCGATATTATCCCATCCTGAGAGGGGGTTTGTTGTACACCTTGTGACCACCAGAGGGAAACCTTCCCACGGGAAACAGCActgtaacacagtacagtactggTGCTTCTATGGTGATTCTCCCTCAgattcagtgtttaatagtcacatgtacagggttgcagttGTGATTATCTTAGGCTTCAagctccaacatgcaggactaagtgaaataaaataactAAAATTGTAATAAAAAAAACTAGAAATAGCACTATATTATAGAGCTCCCGAGAGGCACAGCggttaaggcactgcatctcaatgcaagaggcgtcactacagtccctggttcaaatccaggctgtatcacatccggctgtgattgggagtcgcatagggcggcacacaattggcccagtgtcgtccggggtaggcagtcattgtaaataagaatttgttctgacttgcttagttaaataaataaaaaaatatatacata

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K05476 TNFSF13B, TNFSF20, CD257; tumor necrosis factor ligand superfamily member 13B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050911 lncRNA downstream 213195 24561323 ~ 24561523 (-) True G1791855
TU2050853 lncRNA downstream 233265 24519907 ~ 24541453 (-) False LOC110502073
TU2050854 lncRNA downstream 233265 24519907 ~ 24541453 (-) True LOC110502073
TU2050840 lncRNA downstream 325201 24449195 ~ 24449517 (-) True G1791788
TU2050508 lncRNA downstream 404627 24369637 ~ 24370091 (-) True G1791474
TU2051091 lncRNA upstream 53329 24832264 ~ 24832586 (-) True G1792026
TU2051102 lncRNA upstream 60288 24839223 ~ 24839788 (-) True G1792037
TU2051106 lncRNA upstream 64112 24843047 ~ 24843264 (-) True G1792041
TU2051426 lncRNA upstream 82162 24861097 ~ 24861333 (-) True G1792347
TU2051433 lncRNA upstream 96846 24875781 ~ 24876036 (-) True G1792354
XM_036958970.1 mRNA downstream 18868 24519574 ~ 24755850 (-) False LOC110502073
XM_036958971.1 mRNA downstream 44194 24519574 ~ 24730524 (-) False LOC110502073
XM_036958966.1 mRNA downstream 46915 24519574 ~ 24727803 (-) False LOC110502073
XM_036958968.1 mRNA downstream 46915 24523100 ~ 24727803 (-) False LOC110502073
XM_036958972.1 mRNA downstream 46915 24523100 ~ 24727803 (-) False LOC110502073
XM_021579292.2 mRNA upstream 470 24779405 ~ 24785002 (-) True LOC110501608
XM_021579294.2 mRNA upstream 320506 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 384254 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 452326 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 494933 25273868 ~ 25278632 (-) True LOC110501615
TU2050435 other downstream 447591 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1314358 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1605355 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 2355220 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2953773 21790756 ~ 21820945 (-) True LOC110501594
TU2051421 other upstream 69656 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 77889 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 207024 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 931638 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2489727 27268662 ~ 27286095 (-) True G1794978

Expression Profile