RNA id: XM_021579292.2


Basic Information

Item Value
RNA id XM_021579292.2
length 4489
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110501608
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24779405 ~ 24785002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTTGCCACGTTCTACACGGAATTTATCGAAGTGACACGAGTGAAGAAACACTATACAGGAAGTAGCTAGCTACATAACTGCATTAGGTTGCCTGCCGGGTTGTTTATTTATAGTCGCTCATATCTGAATATACATTTTGTGTGAGCTTCTGGACCGAATGACATTGACTGCGTTTATTATGCAATTTGTTTACCTCGCTGCATGCAGTTGAATCGAAAAATTATGAGAGAGAGggtgtgtgtggtggtgtgatcCTGTGTGTCTTCTCTGTGCCATGGAGAAGCCGTGGAGGCTGTGGGGCTCGGTGGAGCGCTGTGCCCTGGCCTTGGCCTCCTGGTCCTGGGGTGCCTGTCGCGTCTCCCTCCTGGCCCTTATCCTCACCTTCCACCTCTTTGGAGGCTTCTTCCTCCTGGCTCTCATCCTGGCCTCGGTGGCTGGCATCCTTTACAAGTTCCAGGATGTGCTGCTCTACTTCCCCGACCAGCCCTCCTCCTCCCGTCTGTACGTGCCCATGCCCACAGGCATCCCCCATGAGAACGTCTACATCCACACCAAGGACGGCGTGCGCCTCAATCTTATCTTGCTCCGCTACACTGGTGGAGACAGCCTGGGCAACCCTGGGGTCGCCCCCGGCAATGCATCTAACCCCTGCTCCACGGCCCCACCCACCATTCTCTATTTCCACGGCAATGCGGGCAACATCGGGCACCGGGTGCCCAACGCGCTCCTGATGCTGGTGAACCTGAAGGCCAACGTGGTGCTGGTGGACTACCGGGGGTATGGGAAGAGCGAAGGTGAGCCCAGTGAGGATGGCCTGTACCTGGACGCCCAGGCCACGCTGGACTACGTGATGACCCGGCCCGACCTAGACAAGACCAAAGTGATGCTGTTCGGCCGCTCTCTCGGGGGGGCGGTGGCAGTACGCCTGGCCTCGGCCAACCCTCACCGCGTGGCGGCCATCGTGGTGGAGAACACCTTCCTCAGCATCCCCCACATGGCCGCCACACTCTTCTCCTTCTTGCCCATGAGGCTGCTGCCCTTGTTGTGCTACCGGAACCAGTTCTTGTCCTACAGACAGGTGGCGCTGTGCCGGATGCCCTCGCTGTTCGTGTCAGGCCTGTCAGACCAGCTCATCCCACCTGTCATGATGAAGCAGCTGTACGAGCTGTCGCCGGCGCGGACTAAACGGCTGGCCATCTTCCCAGAGGGCACGCACAACGACACGTGGCAGTGCCAGGGCTACTTCGCCGCTCTCGAGCAGTTTGTCAAGGACCTGATGAAGAGCCACGCCCACGAGGAGAGAGTCCAGTCCACTGCCAGCGTCACCATCATCTAGTCtagtggggagggaggaagactgTCTGGTCTAGAGAAAACCCTGCATTCCATACTCCCTATACAGTTGTGTAGATTGGAAATGATTGAATAAGTCTAATAAGCAAAATGGAAAAGCTAGGGCAAGGTGCAGCCAACCACTACCATATTGCTTATACCTGTCCAGTTCTTTATGATCTACTTTAAGTACTTATTGTGGGTTATGGGTTGTTCCTGGACCAGGTCATGGAGTTAGTGTGATGGTAGGATACAGGAGAGTGGGTATTGACTCCTCCATTTGAATGAACAGAAGTAAACTGGGCTCAACTACTAGGGTCAGGTTAGAGAGAATGTAGATTTCTATGTTTTTTGGGAGGTTTGGTTTTTATTATCTTATTCTGTTGGTGTAATTGTACCAGATCAAACAATTGGGGAGTATATATGGAGGGGGACAGTGTTTGATGTGGGGGGATGATTAACATGGAAATGCTTTTGTGTTTGAACTATGAATGCATGGGTGAATATGTACTTTTTATGGCCTTTGAATggcttacacacacaccatacacacaaccATGTTCATACTGTcagacacaacacaaccacaggTTTTTACAAAGAACATAACAGAATTTCAGTAAATCAATAAAAATGTTTGATTAGCATAATAGCATTTCAGTAACTCAATAAGAAATGTTTGACAAATATGATAGCTTTTCACAAATTCAATAAAAGTCTTGCCTGTTGTAATGACGTAAGACCCAAGATCTTGgcatttaacattttttttacataatcTATGCTATTTCAGGACACGCTGTTTAAAGTTAAATGTGTGAGGATCTTAAAGGCTTCATAATATAAAATCATGTTCATATCAGTCGGTAGATTACCATGTGGGCTGTACCATATTGGTTCTCTGTAGACTGTGGCACGTTGAAAAGCTGCATGCACAAACTGCAAGTTTCACTATCAAACTGATTTTGTTATAAATCCCTTGATTATATTCCTTTTCTGCAAAGGTCCCGTTCTTATGTTCTCTGACAATAAATATAAACTCAGATGTGGCCGGAACTGTTTGTCAACTCTTTGCATAGTTTACCCATGACCCTTTATCTTGGTCGGCCACACCAGGGCTTTCAGTTGGATGTGAACTTCAGATCATGACGtgagctgtgtctgtctgtaaaaTACTCATCTATCTGCAATGTTCTGCACACTATTAAAAATCTAAGTGCACTCTCCCAAATAGCATGGCCTGAAAAAACACCTGGCTCTACTTTATACTTCCTGTGAGCCAGGTACACACAGGCTCTGgttagatagtgtgtgtgtgttgggtgtgtaaTGATTGAATTCTGATCCCTGTGTTATTGCCTTGAGACTCGAGTGGGACTAAgttgtattattatttgtgtTAATCTATTCTTCTCAACATAATTGTTCCTTCAAGTAGGCTCGTGTCTCATCTCACCCTATAGCTCTTGTGGAGAAATGGCTTTATCCTCTTGGAGTGCTTTTTACAAGCTAATTAACCTTTCCTGCATGTCTCCCAGGGACTGAAGGTGAGctagaccagtgtttcccaactgtggtccttgagtacccccaacagtacacatttgtgTTGTAGCCTTGGAAAACACTGCTCATTGAGGGCTTGTTGACAAGTTGATCCAGGTGTGCTTGTGAGCTAGACAATAATAAACTCTTACTGTgctgggtcctgttcattaggcaccaaacaaaaGGAAACGTAATGAAACATGTCCAAAAAAAAACGCTAATGTTTAGTTGTCCGTtgtaaaatgttttgctacggtgtgctctaatgaatatgaccctgctCTCAGTCTCAGTGCAGCATGCTGCAGTGCAGTTTTACAGTATTGAAGCCATTCTGACACAACAAACAGAGACACTCAGCATCAGCAGACATGTTGGCTCTAGAGTCTAACTTCAGACTAAACTCTCCATCACAGTGAGATGAAACAGTCTCAGTGTTGGTGACGTTTCTGGTTTTAACTGTTTTAACTTTTATATAGGGCACTTATTTTACAATATATAGGCAATTACCTACTGAATGTGTAGTCAGTGTGGATGTGAGTTGACCAGTGTGCTTTACATGAAGAGAAACTCTGTACAGTGTGAGATCCCCAGCATTATATAGCGTTATGTGGGATGTTTTGTAACCCAACAAGGGGTGCATGCTTTGTCTGCAGTGGTTGgcttgtgtgtgtatgatggACAAACACTTTACTGAGTCTGTGttgatgcatttgtgtttataGACCTTGTAGTACCAGTCTACCGTCTCTGAGAGTAGACTGCCAAAATATTTCAATGGCAGGAACTGACTGGCTTGCTGCCATATCAAAATGTGTGTGAGTGGAGCGTGTTGCTGTGCTGTCACAATCAGACCCTGTCAGTTACACACACCTGTAGACAATGACCTGGCAATGTGCCATAAACAGTGGGAGTCAATACCCATTTCATTTAAATTACTGTAAGATAACTTGGACATGGTTAGACATCCTAAGAGTGCAATGCaatttctgaattgactggaattggcCCAGACTCCCACCAAAGTTGTTGATCGAGTTGATAGGTGTGGGACTTTTTTTCAAAAACGTTGCTGATAGAATCTTTGGCCCTGCCTGATTACCAACCACCGACGAGGTCCCATtgtgaaatcatttcaaatcgAACTGAATGTTTTGTCTCAAAGCAATTGCTATTCTACATGTTTGCACTGGCATTGTGTAAAATAGCCTTTGTACAGTTATCTGATTGTTAATGCTTCTCAGAATGGTGTGGAAGCTGACAATATGCAGGAGAGAAGGATGCATGGGTATTATTGATGTACTGAAGTGTTCATATGTTGACATACTGATATGTTGAAGCACTAAAtgcatgatgatggtgatgaatgTTCACTCTTCTCTGAACCGGAGGCTTATGGGTATTGTAGTTGAGCGCTCTGTACCTTTTCATTAACTGAATTTGTAATGTTCATCCATTCAGTTTAGGAAAACAACCATTGCACTCATTTCCCTACTCtagtgttgatgttttttttatattCATTATTCTTTTCTATGTACACACTCACTTTCTAttctctgtacagtaacatgcaatAACTGAATAAACCCAATATTCTGCTAAA

Function

GO: NA

KEGG:

id description
K24083 ABHD13; abhydrolase domain-containing protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050911 lncRNA downstream 217882 24561323 ~ 24561523 (-) True G1791855
TU2050853 lncRNA downstream 237952 24519907 ~ 24541453 (-) False LOC110502073
TU2050854 lncRNA downstream 237952 24519907 ~ 24541453 (-) True LOC110502073
TU2050840 lncRNA downstream 329888 24449195 ~ 24449517 (-) True G1791788
TU2050508 lncRNA downstream 409314 24369637 ~ 24370091 (-) True G1791474
TU2051091 lncRNA upstream 47262 24832264 ~ 24832586 (-) True G1792026
TU2051102 lncRNA upstream 54221 24839223 ~ 24839788 (-) True G1792037
TU2051106 lncRNA upstream 58045 24843047 ~ 24843264 (-) True G1792041
TU2051426 lncRNA upstream 76095 24861097 ~ 24861333 (-) True G1792347
TU2051433 lncRNA upstream 90779 24875781 ~ 24876036 (-) True G1792354
NM_001124564.1 mRNA downstream 470 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 23555 24519574 ~ 24755850 (-) False LOC110502073
XM_036958971.1 mRNA downstream 48881 24519574 ~ 24730524 (-) False LOC110502073
XM_036958966.1 mRNA downstream 51602 24519574 ~ 24727803 (-) False LOC110502073
XM_036958968.1 mRNA downstream 51602 24523100 ~ 24727803 (-) False LOC110502073
XM_021579294.2 mRNA upstream 314439 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 378187 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 446259 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 488866 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 516817 25301819 ~ 25311767 (-) False LOC110501616
TU2050435 other downstream 452278 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1319045 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1610042 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 2359907 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2958460 21790756 ~ 21820945 (-) True LOC110501594
TU2051421 other upstream 63589 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 71822 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 200957 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 925571 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2483660 27268662 ~ 27286095 (-) True G1794978

Expression Profile