RNA id: XM_021579294.2


Basic Information

Item Value
RNA id XM_021579294.2
length 3216
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110501610
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25099441 ~ 25149856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATTTACAAACCCTGAACGAGACCTCTGTGTTCTTGGAGTGTGTGGAAGCGCAAGGCGCAGCGTCAAATGGAACGCCAAACTCCAGCCTGGAACTCACAAACATCACCACCTGTGGAAACGCTTACGTCGTCCTCAAACCGCAACATGTCAAACAGAAAGagGTGGACTCGCTGCGTATCCTGCTCTACTCGGTAATCTTCCTCCTCAGTGTGTTTGGCAACCTGCTAATCATTGTGGTCCTGACGGTCAACAAGCGCATGAGGACGGTCACCAACTCCTTCCTGCTGTCCCTGGCGGTCAGCGACCTGATGATGGCCATCTTCTGCATGCCCTTCACCCTCATACCCAACCTCCTGGAGGACTTCATCTTCGGGCCCACCATGTGCAAGATAGTGGCTTACCTCATGGGTGTTTCCGTGAGTATATCCACCTTCAGCCTGGTTGCCATAGCAATTGAGCGCTACAGCGCCATCTGCAACCCGCTAAAGTCACGGGCGTGGCAGACCCGTTCCCATGCCTACCGGGTGATTACTGCCACCTGGCTGCTGTCTTTCATGATCATGAGTCCCTACCCGGTGTTCAGCCACCTGGTCCATGTCCCCCTGAAGGACAACATCACCATCGCACGCATGTGTCGCCATATCTGGCCCCACAGGGAGGTGGAGCAGacctgGAATATGATGTTGCTGCTTACGCTCTTTGTTGTTCCGGGTGTGGTGATGATCGTAGCCTATGGACTTATCTCCAGAGAGCTGTACCGGGGAATCCAGTTTGAGCTGGGTCAGAAGACATCATCCCCCAGTCTAAAGAATGGCCTGACCGGCACCGTGTCTTGCGGCAGCGACGACGGCGATGGTTGCTACGTCCAGGTCTCCAAGCGTCCACACTCCATGGAGATGTCCACCCTGACATCATCTACTGCGAGCACATCCAAAGTGGAGCATGCCCGCAGCAACTCCTCAGAGGCCAAGCTCCTAGCCAAGAAGCGTGTGATCCGGATGCTGGTGGTAATCGTGGCTCTGTTCTTCCTGTGCTGGATGCCACTATACTGCGCCAACACCTGGAAGGCTTTCCACCCAGCCTCTGCCCGCCGTGCCCTCTCTGGTGCCCCCATCTCCTTCATCCACCTACTGTCCTACACCTCGGCCTGCGTTAACCCCATCATCTACTGCTTCATGAACACTCGCTTCCGCAAGTCGCTGCTTGCCACCTTTGCTTGCTGCTGTCGTCCTCCCTGCCGACGCCAAGGGCTgcgggatggagaggaggacgcAATGGCTTTGGGGGTGTCCATGTCCAAGTTTAGTTACACCACAGTCAGCACTATGGGGCGTGCTGAGGGAGGgaccactgactgactgggggACAGGGGAGACCAGAGAGATATGTGGTTATGTGATCGGTTTAGTCATTTCTATAGGGGAAAACATTAACCTGTGGTCATTAAGTATGGGGGAGATTAggtttgggcggtatccagattttcaaaCCTTCCTACCATTCCTGTACCATACCGGGGTACAAGTTATTACCGGCATTGCACACAAGGGGGGCTATTTATTTTCGAAAGCAAAAAACAACACcaacaaaacatttaaacaattcttattttttttactcaCAAAACAAATTTGGGCaggatccaggaggggattgacTTATTTAACATATAGTTATGAGCAGTGGCGTAGCATTTATATATTTACGGTATTCAAAATCATACTGTCGGAATTTCAAAATTCCCCCGGTATACCGCCCAAGGCTAGGGGAGATGCACCCACAGTCTATAGGGAAGTCAACACAAGACCATGACTGTAATGCTAATGTCAAGACCAATTGGCTCAGAGATGTATTATCTAGTTAAACTAACCTACTGTATGTCAATGGGTAGATCCAACCTGTAGTCCTTTAAAAAGGGAAAATACTCATGGCCTATGGAAAATGAATACCCAACATACCCAAAGGAAAAGGACAGTTATACACAGTTCAATAGTTGAAAAACAAAAGAAAATAATGGAAATATAATAGCACTGTTTTTCATTAGCATTTGTCCCAAGCGATGGAAAACAATGTTTCATTTAATGGTATGTAGCCTATGTAGTTATTTCGTTATCATCTGGGACTCATTAAAACAGCTTGCATTCATTTTTACTGTTGAACCCCTGATAGAGGATGGGAACTAACATCAGGGTAGAATAAAAGGGTTATGTGTTGGTATGGGGGTATATTCCTGAATGATACGCTATGAGGTTGAGGTGCAGTAGCTTGTGGAACAGGTATTAGTAATACCATTTGCAAAGTTTCTACTTATTTTCACGTTGCTTTGGGTTTTTACAATGCTGATGATGTGCTTATTATTAGTGTTGTCAATGTCCTGATGATGAGAAACTCTGTTGTGGACTATAAGTGCGTGCCTGCAAATGCTGATCTTTCTTCGAGTATCATCTGTTTGCTGTGCTGTGGACTATGTATTTCATGACGGACATTGTAAATACGGTGTTGCTACATCATGGTCTTAGCCAGACTGGATTGGATGTGGATTGGAGGCCAGACTCAACTGCGACCAAACCAACCCAACCTTACCGAAGACAGCAGCGATAATGAAAGTAAGTAAtgtggggtattagggaggtactgttactgtatatttaGGCTGTTAGTCTGGATCCAGCTCATTTGTCTCTTTTAGAGGTGCATCCTTGCTTTTTCAAAAACAGCTCGGTCTCTGCAGAAAACTGACGACACAACAACTTGTGTTGCATATCATTGATCTGCTGTGTACAGTGTATGTGCTCTGTTGCCATCTAAAGCGCCATGTTGTCCATGTATCCACTGcactgttggtgtgtgtgtttgtgttgctgcTAACAGGGTGTGTAAAGTTACTCAGCTGAGCAGGGGAAAGATTCAACAGACATTACTGATTGGCTTCAGCAACATCTAAACTGTCAAAAATGTCCTGTAATTCATACAGTAAAACACTGGCAGCACAGAAGCCTGTAGATTTACAGGACCTTTACTAAAATATCAATTTACAGCATATTACTGGAACACCTGACTACAGCCACATGCTGTATTTCTAGAATCTACAGTgtatatgtgacaataaaacatatacattgagtgtacaaaacattaatatggagttgcacccccttttgccctagGAACAGACTccattcgtcggggcatggactctacaaggtgtcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051556 lncRNA downstream 2879 25095492 ~ 25096562 (-) True G1792471
TU2051602 lncRNA downstream 5290 25092268 ~ 25094151 (-) True G1792509
TU2051601 lncRNA downstream 6197 25092268 ~ 25093244 (-) False G1792509
TU2051547 lncRNA downstream 63650 25035327 ~ 25035791 (-) True G1792462
TU2051531 lncRNA downstream 85743 25011600 ~ 25013698 (-) True G1792448
TU2051651 lncRNA upstream 14507 25164363 ~ 25164879 (-) True LOC110501612
TU2051652 lncRNA upstream 17567 25167423 ~ 25167652 (-) True G1792557
TU2051666 lncRNA upstream 41301 25191157 ~ 25191361 (-) True G1792571
TU2051618 lncRNA upstream 72009 25221865 ~ 25225823 (-) False G1792525
TU2051619 lncRNA upstream 72009 25221865 ~ 25265798 (-) True G1792525
XM_021579292.2 mRNA downstream 314439 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 320506 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 343591 24519574 ~ 24755850 (-) False LOC110502073
XM_036958971.1 mRNA downstream 368917 24519574 ~ 24730524 (-) False LOC110502073
XM_036959587.1 mRNA upstream 13333 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 81405 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 124012 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 151963 25301819 ~ 25311767 (-) False LOC110501616
XM_021579309.2 mRNA upstream 151963 25301819 ~ 25311767 (-) False LOC110501616
TU2051516 other downstream 113173 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 241556 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 249689 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 772314 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1639081 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 560717 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2118806 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2591516 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2591516 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2830808 27980664 ~ 27981379 (-) True G1795850

Expression Profile