RNA id: XM_036959587.1


Basic Information

Item Value
RNA id XM_036959587.1
length 1340
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110501612
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25163189 ~ 25176805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgttgaggatcagcgtggtggaagGGTTATTGCCGACCATCACCAGTTGGGGTCAGCCcGAGCGGATTGAATACTCCAAGACATTCCAGGGGAAATACTTCAACTTCCTGGGTTATTTCTTCTCCATCTACTGTGTGTAGAAAATCTTTATGGCCACCATTAACATTGTGCTTGACTGTGTTGGGAAGACTGATCCAGTGATTAGAGGGATTGAGATCACTGTTAACTACCTAGGCATTCAGTTTGATTTAAAGATCTGGTCTCAGCACATCTCCTTCATCCTGGTGGGCATCATCATCGTCACTTCTATTAGAGGCCTTCTCATCACACTCACCAAGTTCTTCTATGCCATCTCCAGCAGCAAGTCCTCCAATGTTATAGTGCTGGTCCTAGCTCAAATCATGGGGATGTACTTTGTCTCGCCCGTTCTCCTCATGAGGATGAGCATGCCTCTAGAGTATCGCTCTATCGTGACCGAGGTGCTGGGCGAGTTGCAGTTCAACTTCTACCACCGATGGTTCGACGTCATCTTTCTCGTCCGTGCCCTCTCCAGCATCCTTTTCCTCTACCTCGCCCACAAACAGGCTCCCGAGAAGCACATGACCCCCTGACCCCACTTTGAACTTGACCCTTTACCTGGAAGCTCAGCTGGCGTCCAGATCTGAACTTTGAGTCTGTGGGATTTAGATTTTCTCTTTTTAAATCTCTGGTCCGTCTGTGTGGTGGCGAGAAGAAGACGTTTTGCCTGTGTTTCCTGAATCAGGAAGGGCCGACGCTTGGCCATGTGGACCATTGGTGTCGGGGGGATTCAATGGAGGGGAATTGGTGCCATGGAACGCTGGACTAATGTTGGGGTGAACGTGGGGGTGGAATGACTAAAACAATGTGGATGTGTCATCGTGCTGTTGAGCCGTTGGACACAGGTTCTGTCTAGCCTTAAATGAATCTGACCACAGGAGAACTGCATAGTATACAGCACAGACCAGCTTCACTGCAAACACTAGCTTTGTTGTATGAATGGATTGTAAAGACCATCACTACCTGAAGTGTACACTCTATTTTTGATAAACAGAATACTCAAAATTAAAGAAGAAATGTATCCCCAATGTCCATGATGCTATTTGCTAGCATCATTCATTGTGTCCAGTCTGTACATGTACCTAGGGTTGTTTGTTGGTGTATGTGTGCgaatatctactgtactctactgtgctttcACACAGGTGGGAAAGCTACAGAATAAACCAATTTATGTGGTTATTAGTTACTCCGTTCCCTTTCTTTTAAGTACTGCAATGCCACTACATTTACCAGTTAAACAGAGAATAAGTGAATAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051625 lncRNA downstream 27610 25135180 ~ 25135579 (-) True G1792531
TU2051624 lncRNA downstream 32668 25129471 ~ 25130521 (-) True G1792530
TU2051607 lncRNA downstream 57434 25105520 ~ 25105755 (-) True G1792514
TU2051557 lncRNA downstream 61802 25100435 ~ 25101387 (-) True LOC110501610
TU2051556 lncRNA downstream 66627 25095492 ~ 25096562 (-) True G1792471
TU2051666 lncRNA upstream 14352 25191157 ~ 25191361 (-) True G1792571
TU2051618 lncRNA upstream 45060 25221865 ~ 25225823 (-) False G1792525
TU2051619 lncRNA upstream 45060 25221865 ~ 25265798 (-) True G1792525
TU2051927 lncRNA upstream 122564 25299369 ~ 25311751 (-) True LOC110501616
TU2051928 lncRNA upstream 135011 25311816 ~ 25312063 (-) True G1792801
XM_021579294.2 mRNA downstream 13333 25099441 ~ 25149856 (-) False LOC110501610
XM_021579292.2 mRNA downstream 378187 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 384254 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 407339 24519574 ~ 24755850 (-) False LOC110502073
XR_005038964.1 mRNA upstream 54456 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 97063 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 125014 25301819 ~ 25311767 (-) False LOC110501616
XM_021579309.2 mRNA upstream 125014 25301819 ~ 25311767 (-) False LOC110501616
XM_021579312.2 mRNA upstream 167871 25344676 ~ 25387472 (-) False gsk3ba
TU2051516 other downstream 176921 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 305304 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 313437 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 836062 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1702829 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 533768 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2091857 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2564567 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2564567 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2803859 27980664 ~ 27981379 (-) True G1795850

Expression Profile