RNA id: XR_005038964.1


Basic Information

Item Value
RNA id XR_005038964.1
length 2615
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118943630
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25231261 ~ 25234195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAAGGTAGCAGCTAATGGTGATCCttaacaaatacaaatacaaggctcgggagagggAAAGATCAAGTCATGCGTCCCCAGAAACATGATGTGACAACacccgctcgcttaacccagaagccagctgcaccaatgtgtcggaggaaacatcgtTCATCCACAACAAGCCACAAACATCGCCCGGCCAGCCACAAGgtgtcgctagagcgcaatgagccaagtgAAGCCCCCCAACCGCCAAACCCgcccctaacccggaagacgctgggccaattgtgcaccaccctatatGACTCCCGGTTACGGCCAGTTGTGACaaagcctgggatcgaaccacaggctgtagtgatgccgcaacactgcgatgcagtgtcttagacggCTAtgtcactcgggaggcccagcACAGACCTTTTTTTATTTGCCTGTGCTACAAATGCCTATATCAGTCTGCtaataaaggactagtaaaggtccagtgcactacttttgcagaaaaaaataatgtaaaaaatcTTTGTTATTATTTGTGAATTTgtgatttttcagggggtgctgcatcACCCTCCGCACACCTACTTCCCACGGCTGTGATGTGTTGTGTACATCTGCAGGATGTTTATACTTATGACTGCCTCTGTTTGCAGAAACATCTCAGGATACAGAAGTGGAACTGAGTGAGCTGAGAATACAGGAAGCTGATGTAGATCAACAAAGCAGTATTTGTGACTCTATATGACCTGATGATGTGATCAAATTGACAAAATCATATCAGCTGTGTAACATCTCTTTGTCTGCCCTTGAATAATATCTATTGAGGCAGAACGTTTAATGTGAAATGTATATCAACTGTAGCTGTTGAACACAACTTGGTTGCTTGCGTAAATTAATACAGTCAAGAATGGAGAACTGCCTCAGTAATTTATTGATCAGAAGATGGCGGTATTGTAACACACTGAAAGTAGCTAAAGAAAATGGTTGCAACTGTTAATGAACTCTGATAGTGACTGAATGGAAAGCATTAGTCATCAGGTGAATGTTTCTTACCACAGGTGATGCTATACTATGTTTGCTGTACTAAGTTTGTCCACGTCCATGTTATGTTAAAGACATCCTccaaagatttttttttacttctgCTGTTGAAAAGCAACATTCCAAGTATAAATATAGTAAATTACACACATCACAAAgggtaaaaaaaagtgtttttttagACACATCTGCAAACTTCAAGAAGTAGGGATTCAAGGAGCTGTTCTGATGGTCAGGTTCCCTCTTGCTTGACGCACAATAGAAGAGCAATAGAGAACCAAAGAGGACCCACCGTGGTCTGACCACATCCTGCTggtcctctgtctcctcttcctgGTCTGACCACGGTTGGTTTGCTCTAACTGAGTGACACGAGCACTGAAGCTCATTGTCATTTAAAGCACCTATagctataatatactgtaacccaCTGGACCTCATCatcgttagtcagcacctctacactaaATCATATTCTCTTGGTGTGCGCCAGCTCAGGTTTTTATTAGACCCATTTAATACTGAAAACTTTTATTGTGTACAAGGTTGAAATACAGCAAACATGTCACTTTAACTTTCTAAAATATCCACATTATTCAGGACAAAGAAGGTCAACAAATAACGGCATAAAGGAGCAGGCAGCACCATGTCCagacctctcctcctgctctaaGGGAACCTTTCCATCATCACCATTCACACCAAACCCTGCCCACTCCGACAATCTCTACAACAATGGTCCCTATGCCAAACACATCAACAGGGCATCGGCACACAGCCTCCTGATGACAAACGGAACTCTGCCTTCCTCGGATATCACAGCTGGAGGTCAAGGGTCAAACCACCAGACCCCTAGAGAGTCCCCAAACCTCCCCATATCCCAACCCCCAGGATGAATGCTCAGAGAACGCAGCCATCTGAGTCCATTGAGCCCATCGGCTCTGAAAGAGACCTCATCCAGACCATAACGGCAGAGTGCTGCTGACTGTTTAAGTTGTCTTCTTTGTTGGATCTTCTCACTGAAAAAGAGGAAAGCTGAACATATTTTGTGGATGAAAATGTTACTCCTTGGgggattcatgtttttttttatatatatgtaactcacacacactcttcctgGTGTCATGGAAATGTTGAGCAGTGTGTTAACCGCAGTGCAGCAGTATTTCAGagaataaaatgtgatttaaagATGGGGGGGGATCGTGGTGAGACAGGTGGGCAAGGGTTAGAGCTAGAGAATATGTGCTTCTGAGTGTGAACCTTCCTTCACGTCACACCTCAGAGTTAGAGGAGCAAAATAATACCTGTTAGCAGTGTGTATCACAAAGGTTATCTCACACGTGATGATGATAAACCATCATTTGTTATTGactatcaaaatatatattttaatgaagaAACCACTGAGACACTTTGGTGATTATTAGTGATGATTTGGGGCTATAACAGGGAAAAATAACTCATACCGAACATTTTATGTCCCTGTGTGTGACTaagtgtgtgtgcgcctgtgtctATATGTCTGTATATGACTTACTCagtatgagtgagtgagtgagtgagtgagtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051618 lncRNA downstream 5438 25221865 ~ 25225823 (-) False G1792525
TU2051666 lncRNA downstream 39900 25191157 ~ 25191361 (-) True G1792571
TU2051652 lncRNA downstream 63609 25167423 ~ 25167652 (-) True G1792557
TU2051651 lncRNA downstream 66382 25164363 ~ 25164879 (-) True LOC110501612
TU2051625 lncRNA downstream 95682 25135180 ~ 25135579 (-) True G1792531
TU2051927 lncRNA upstream 65174 25299369 ~ 25311751 (-) True LOC110501616
TU2051928 lncRNA upstream 77621 25311816 ~ 25312063 (-) True G1792801
TU2051909 lncRNA upstream 110456 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA upstream 110484 25344679 ~ 25361194 (-) True gsk3ba
TU2052478 lncRNA upstream 414306 25648501 ~ 25649291 (-) True G1793311
XM_036959587.1 mRNA downstream 54456 25163189 ~ 25176805 (-) False LOC110501612
XM_021579294.2 mRNA downstream 81405 25099441 ~ 25149856 (-) False LOC110501610
XM_021579292.2 mRNA downstream 446259 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 452326 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958968.1 mRNA downstream 503458 24523100 ~ 24727803 (-) False LOC110502073
XM_021579307.2 mRNA upstream 39673 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 67624 25301819 ~ 25311767 (-) False LOC110501616
XM_021579309.2 mRNA upstream 67624 25301819 ~ 25311767 (-) False LOC110501616
XM_021579312.2 mRNA upstream 110481 25344676 ~ 25387472 (-) False gsk3ba
XM_021579311.2 mRNA upstream 110481 25344676 ~ 25387474 (-) False gsk3ba
TU2051516 other downstream 244993 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 373376 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 381509 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 904134 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1770901 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 476378 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2034467 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2507177 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2507177 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2746469 27980664 ~ 27981379 (-) True G1795850

Expression Profile