RNA id: XM_021579307.2


Basic Information

Item Value
RNA id XM_021579307.2
length 2466
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110501615
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25273868 ~ 25278632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatactgtaaccCACTAAAAATACATATACGTGTTGGCCTACGATGTGTGAGGGAGAGGAAACAGACCTCTAAAGTAGAAGCAATAGACAAGAGAGCTATGGTAGGTAGGCTCATATGTAGGAGGACAGGAAGTGGAAAAACCCTGTAGAtgcagaggagatagagagaaagagagagagagagagagagagagagagagagagagagagaaatattcaGAACATATCGTCAGTGTCACCACTCAACTCACGTGTGTAATCACAGGCGGTTTGCTCTAACTGAGTGACACGGGCATGACCTGTCTTGAGATCTCATAAGACATTGCATCTTTGCCCTGATGGACCCACTGTGGTCTGACCACATCCTGCTggtcctctgtctcctcttcctgGTCTGCATCAATGGCAATGCTCAAGGCCCATGTGAAATTGAGGTGCCAATCAAAAGAAACACTGTTTGGAATGCTGTCCCTCAGAAACGGCTGACAATCAACTGCCCTGTAAAACATTGTGGGGAAACCTTACGTGTCACCTGGTGTAAATTTGAGGACGCCAACTGCAAACAAATCAATGAGACAGAGCAAGTCAAAATTGGATGGAAACCATTTGATAGAGGGTCAGAAAATCGTATTGCATTTTTGGATTTTAAGAAGATATCTAGGAATGACGATGGTTCGTACAGATGTGGAATGGCTGGGAAAAAATCATCAATTGTTAGCCATGCTATCAATGTCTCTGTCTCAGATATCAACCTGACAATGACTAGCACAGCAGACCACAACACAAACAACTCACCAAATGCAAAGCATGATGAGAAATATCTGAGCTGGCTGCCGTATGCTTACATCTGTGTGGGAATAGTACTGCTGGTGGTCGTGGTGACACCAATCTCCTTCTTCTATCTTTATGGATGTAAAGGACCAACAAGGTCAACAAATAACGGCATAAAGGAGCAGGCAGCACCATGTCCagacctctcctcctgctctaaGGGAACCTTTGCATTATCACCATTCACACCAAACCCTGCCCACTCTGACAATCTATACAACAATGGTCCCCATGCCAAACACATCAACAGGGCATCGGCACACAGCCTCCTGATGACAAACGGAACtctgccttcctctgacatcacagCTGGAGGTCAAGGGTCAAACCACCTTGTGTACGCTAGCCTGAACCACCAGACCCCTAGAGGGTCCCCGAAACCCCCCCATATTCCAACCCCCCATGACGAATGCTCAGAGTATGCAGCCATCCGAGTCCACTGAGCCCATAGGCTCTGAAAGAGACCTCATCCAGACCATAACGGCAGAGTGCTgctgactgttttactgtttaaGTTGTCTTCTTTGTTGGATCTTCTCACTGAAAAAGAGGAAAGCTGAACATATTTTGTGGATGAAAATGTCACTCCTTGGGGGATTCATGTTTTTTTATACATATATAAAACTAACACACACTCTTCCTGGTGTCATGGAAATGTTGAGCAGTGTGTTAACCGCAGTGCAGCAGTATTTCAGagaataaaatgtgatttaaagATGGGGGGGGATCGTGGTGAGACAGGTGGGCAAGGGTTAGAGCTAGAGAATATGTGCTTCTGAGTGTGAACCTTCCTTCACGTCACACCTCAGAGTTAGAGGAGCAAAATAACACCTGTTAGCAGTGTGTATCACAAAGGTTATCTCACACATGATGATGATAAACCATCATTTGTTATTGactatcaaaatatatattttaatgaagaAACCACTGAGACACTTTGGTGATTATTAGTGATGATTTGGGGATATAACAGGGAAAAATAACTCATACCGAACATTTTATGTCCCTGTGTGTGActaagtgtgtgtgcctgtgtctatATGTCTGCATATGACTCACTCAgtatgagtgagtgaatgagtgagtgagtgagcgagcgagcaAGTGAGTGTTGGTGTATATTTTTGCACAGATGCGCGTGTTTGTACGCATGTGCTGGCTACAGGTTGGGGGCTTTCCATGGTTTATGTAAAATGTTGAGCCCACCACATAGCCGAAACAGTGAGTTGCTGTAAATAGATGTTCTCCCTCTTGAGAGTGTATGGAAATTCCATTCAAATGTTATATGAATGTAATATGAAAGTGCATATGACTTTCTCTATGGTCATAGGAAGACAGAGGTAATAGTTTGCATAACTGTAAAATGATGTGGGCGTGGCAAGATTGTAATAGTGACACATACAGTAACAAATTCCAATCTCAGTTATTGTCAATTAATTTGAAACATGTTCGTTTGAAGGCTACATGTTTACTATGCAACTACTCAATTACAATACAGTATCCTTCAACAGAGAATAGTGCCAGAGAAATGTCCATCATTTTATAAAGAAATTGCGACAAAGACCATTGTTACCACTTGAAGCAAGAGTGGCTAGTTTTTGAGAATACAAAATAAAGCTTGGGTCTAATATC

Function

GO: NA

KEGG:

id description
K06707 BTLA, CD272; B- and T-lymphocyte attenuator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051619 lncRNA downstream 8070 25221865 ~ 25265798 (-) True G1792525
TU2051618 lncRNA downstream 48045 25221865 ~ 25225823 (-) False G1792525
TU2051666 lncRNA downstream 82507 25191157 ~ 25191361 (-) True G1792571
TU2051652 lncRNA downstream 106216 25167423 ~ 25167652 (-) True G1792557
TU2051651 lncRNA downstream 108989 25164363 ~ 25164879 (-) True LOC110501612
TU2051927 lncRNA upstream 20737 25299369 ~ 25311751 (-) True LOC110501616
TU2051928 lncRNA upstream 33184 25311816 ~ 25312063 (-) True G1792801
TU2051909 lncRNA upstream 66019 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA upstream 66047 25344679 ~ 25361194 (-) True gsk3ba
TU2052478 lncRNA upstream 369869 25648501 ~ 25649291 (-) True G1793311
XR_005038964.1 mRNA downstream 39673 25231261 ~ 25234195 (-) True LOC118943630
XM_036959587.1 mRNA downstream 97063 25163189 ~ 25176805 (-) False LOC110501612
XM_021579294.2 mRNA downstream 124012 25099441 ~ 25149856 (-) False LOC110501610
XM_021579292.2 mRNA downstream 488866 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 494933 24774718 ~ 24778935 (-) True tnfsf13b
XM_021579308.2 mRNA upstream 23187 25301819 ~ 25311767 (-) False LOC110501616
XM_021579309.2 mRNA upstream 23187 25301819 ~ 25311767 (-) False LOC110501616
XM_021579312.2 mRNA upstream 66044 25344676 ~ 25387472 (-) False gsk3ba
XM_021579311.2 mRNA upstream 66044 25344676 ~ 25387474 (-) False gsk3ba
XM_036958977.1 mRNA upstream 66044 25344676 ~ 25387475 (-) False gsk3ba
TU2051516 other downstream 287600 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 415983 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 424116 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 946741 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1813508 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 431941 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 1990030 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2462740 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2462740 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2702032 27980664 ~ 27981379 (-) True G1795850

Expression Profile