RNA id: TU2051927


Basic Information

Item Value
RNA id TU2051927
length 1438
lncRNA type sense_over
GC content 0.41
exon number 5
gene id LOC110501616
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25299369 ~ 25311767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggcaggtggaACGAGCAGCAGTGTCTTGAGGAGTACATGAGTATTGTCAGGAGCCATATAGAACAaccagagagatggggaagacaTGGATTATAGGAGTCATCTCTCTCCTGGCTGTTTCTGCAACCTGGAGCTTAGAAACAGGAATCGTCATACCCTGGCGATTAGTCATAATCTCAGTGGGAACTATAAGCTTCATCATGGTTATTCTGGGGGGTTTATACTTCACACGAAAACACCCCTGCAGAATTAGCCCCAAGGCTCCTCAGtCACAGGACTATGTGGAGGAAGTAGAACCCTACGCCAGCTATGTACAAAGTGCCAATTTAATCTACAACTCCTCTGCAGGCCtgttcacataacacacacacacctctgcatgCCACGCTGCGAACTTTGAGGTTGAAGAAACTGATCCAGTAAACAGGGGAATGATGGAGGACATGACACAGGGCTTCTGTTACAAAAGGATAACCTCACAGATCTGATCACTCCTGACTGACGTGAGAAAATGGCAAAAAACAGACATTTCTACAACCGAAGAGATGTGGGCAGATGAGAGATGATCTTTCCAGTTTAACGTTTTCACAATTTGCACAATGAGAACTATGACTTGCTGTGTAGTCAGCACAACTGTATACCACTGCTCTCATAACACACGTTTGACTGTTCCCACACTCCTGCCATCTGCAAATCATGGGGAAGAGTGCAATTTTGATTTTAATCAAAATCTCAATTTATATAATACTGATGTGTAATTACagtgtttttgttgagtttatatttatgATTGAATTTAAATATCAAGTTTGTTATATAATAAAAACAGATTCTTTACATTTGAAACCTACATCCAGAGTTAATGGGGAAAGGATTTGAAGCACACACAACATTCTCTGTGGTTACATTCATGAGACAAGAGTTTGACTCTGAGAACTAAGATAACAACTAAACTTTTGAGTCGGAAAACGTGTGTTTGCAGTGGTGGAAGTACTCAAATGTAATAAAACTAAAGAGTAAAActgaagataccttaatagaaaacgactcaagtaaaagtgaaagccacccagtgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcatgagttggggtgggcagtctatgtttgtttttctatgatttgggtatttctatgtttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctctgtgtttgcaccagatagggctgttttaggttttcttgtttttgttagtctgttcatgtatagttttcttcattaaagaaccatgaatagaaaccacgctgctttttgctccgcctctccttcacctcaagaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051619 lncRNA downstream 33571 25221865 ~ 25265798 (-) True G1792525
TU2051618 lncRNA downstream 73546 25221865 ~ 25225823 (-) False G1792525
TU2051666 lncRNA downstream 108008 25191157 ~ 25191361 (-) True G1792571
TU2051652 lncRNA downstream 131717 25167423 ~ 25167652 (-) True G1792557
TU2051651 lncRNA downstream 134490 25164363 ~ 25164879 (-) True LOC110501612
TU2051928 lncRNA upstream 65 25311816 ~ 25312063 (-) True G1792801
TU2051909 lncRNA upstream 32900 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA upstream 32928 25344679 ~ 25361194 (-) True gsk3ba
TU2052478 lncRNA upstream 336750 25648501 ~ 25649291 (-) True G1793311
TU2052508 lncRNA upstream 364312 25676063 ~ 25676470 (-) True G1793339
XM_021579307.2 mRNA downstream 20737 25273868 ~ 25278632 (-) True LOC110501615
XR_005038964.1 mRNA downstream 65174 25231261 ~ 25234195 (-) True LOC118943630
XM_036959587.1 mRNA downstream 122564 25163189 ~ 25176805 (-) False LOC110501612
XM_021579294.2 mRNA downstream 149513 25099441 ~ 25149856 (-) False LOC110501610
XM_021579292.2 mRNA downstream 514367 24779405 ~ 24785002 (-) True LOC110501608
XM_021579312.2 mRNA upstream 32925 25344676 ~ 25387472 (-) False gsk3ba
XM_021579311.2 mRNA upstream 32925 25344676 ~ 25387474 (-) False gsk3ba
XM_036958977.1 mRNA upstream 32925 25344676 ~ 25387475 (-) False gsk3ba
XM_036958976.1 mRNA upstream 32925 25344676 ~ 25387478 (-) False gsk3ba
XM_021579313.2 mRNA upstream 78023 25389774 ~ 25416340 (-) True LOC110501620
TU2051516 other downstream 313101 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 441484 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 449617 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 972242 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1839009 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 398822 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 1956911 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2429621 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2429621 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2668913 27980664 ~ 27981379 (-) True G1795850

Expression Profile