RNA id: XM_021579312.2


Basic Information

Item Value
RNA id XM_021579312.2
length 4991
RNA type mRNA
GC content 0.46
exon number 11
gene id gsk3ba
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25344651 ~ 25387478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTACAGTGGTTTATTTGCGTAACCCTGTCGCCACGCGCATCTACACATAAAACCAAGGCTCACAATTTACGCAAATAGCGTTACAAAGGTCCGTAGTGACAAAGACAGCGAGCTGAGGAGGAAGGAATAAAGAAGAATTTCAGGCTTGGACTGCCACTTCCCGAAGAACGAAACGCACAGAGTTTCCTCAAGACCCGATACTAGAAGACCCGTATTTGGACGTCGCGGTGTATGGAGTTGGGACACATTTGAAGGGCCGTAGAAATCGTTCACGTATTGATTGGGCAACTGGCAGATTTTTCCGTTTGAATCGTCCGTAGGGTAGGAGAGCGAGCAGCCATGGCGGTCGGGTCATTGAGTCTTCACATCGGAATATAAAGAGGAACTGCATGGCCCTGCATCTATAGGAATATACAGCAACCATTCCCCATGTCTGACCGTCTCACTTTTGTCATTTTGTGTTCAACTGTGACCACGTTAGAGAAATCAAACCAGCAGTGCAGTGGGTTTATTCGGAGGCCAGCTTCATGATTATTTTATTTGGAAGACGTGTCTCCAAGGCCTAGCAACTGAAGGAAAACGAGGGCTCAAAGGGAAATAGGATGCTTTGAATTACTGTTAGTGGACGAAAAAGGGTGACTGATAGACTAAATAACGTCTGTCAAGGCTCGTGGACAGAGGAGTTGATTTAAAAAATCATATTGTGAATAATCAAACATTCATATTAACGAACTGTTATTCTTTGGATGCAAAGGTTTAGAAAGATAAACCTACCAAGACATCTACACTCACGTAGTCTACAGTATTTGATTCGGGGATTGGATCATGTCTGGTCGGCCCAGAACCACCTCCTTCGCAGAGAGCTGCAAACCAGTGCCGCAGCCCTCGGCTTTTGGCTCTATGAAAGTCAGCAgGGACAAGGATGGCAGTAAGGTGACGACGGTGGTGGCCACCCCAGGCCAAGGGCCCGACAGGCCCCAAGAGGTCAGCTATACAGACACCAAGGTGATTGGGAATGGCTCCTTCGGAGTGGTCTACCAGGCCAAGCTGTGTGACTCTGGAGAACTGCTGGCGATCAAGAAGGTTCTGCAGGACAAGCGGTTTAAGAACCGCGAGCTGCAGATCATGAGGAAGCTGGACCACTGCAACATCGTTCGCCTGCGCTACTTCTTCTACTCCAGCGGAGACAAgAAGGATGAGGTGTATCTGAACCTGGTACTGGACTATGTTCCTGAGACGGTCTACAGAGTGGCCAGACACTACAGCCGAGCCAAACAGACCCTACCAATGGTCTATGTCaagttatATATGTACCAGTTGTTCAGGAGTCTGGCCTACATCCACTCGTTTGGGATCTGCCATCGGGACATCAAACCCCAGAACCTGCTGCTGGACCCCGAGACGGCCGTGCTCAAACTCTGTGACTTCGGCAGCGCTAAGCAGCTGGTACGCGGAGAGCCCAACGTGTCCTACATCTGCTCTCGCTATTACAGAGCCCCCGAGCTCATCTTTGGTGCCACTGACTACACCTCTAGCATAGATGTGTGGTCAGCTGGTTGTGTGCTAGCAGAGCTGTTGCTAGGGCAACCAATCTTCCCCGGCGACAGTGGAGTGGATCAGCTGGTGGAGATCATCAAGgTTCTGGGGACCCCTACACGGGAGCAGATCCGAGAGATGAACCCCAACTACACTGAGTTCAAGTTCCCCCAGATTAAGGCACACGCATGGACTAAGGTGTTCCGGCCCCGTACGCCACCGGAGGCCATCGCCCTGTGTTCTCGGCTGCTGGAGTACACGCCCACCTCGCGCTTCACCCCCCTGGAGGCGTGTGCACACTCCTTCTTCGACGAGCTGAGGGATCCCAACGTCAAGCTGCCCAACGGGCGAGAAAAACCCTCCCTCTTCAACTTCACCACGCATGAGCTGTCCAGTAATCCCTCGCTGGCCAACATCCTAATCCCCGCCCACGCCCGCACTCAGGCCGCCGCCTCCACCCCATCCAACGCCAACGCCACCGCCACCACAGATGGTAACAGCACAGATCGCAGCCCTAACACCATTACTGCCTCGGCCTCTGCCTCCAACTCCACCTCCTGAACCCCCCGCCCCAGCCAGGGGTGATGCCAGTGGAGGGATGATGACATGGCAGGGTTTAAAGCAGatgacaactacaacaacaactccaAGTCACCCATCTAGGTGTTTGATTTCTGCAACCTACTCCACTGTGGACATCTTTATTGTCTGTTAGAAGGAAGGAGTGGTGGGGGACAGGGGAGGCTGATGAAATATAAGAGTATTCATATATAAACGTACCCTATATACACAATACTAGCCTGCTAATGTTTCCAAGAGGACAATCCTACGTATCaaagtagacccccccccccccacacacacacacacacacattcacatgagGGATCAGTCCCTTCCTCATGTCCTCTCCATAACCCACCCCTTCATGTTCTCATCACTTACCTCTGACCCCCTGCTTGGGATGTCTACCCTGGCTCCTCCTCCTGTAGTGCATGGCCTGAGTAAGGTTAGGAGTGACCTTTTACCGCTGCATTGACCTCCATACTTCTGCTAATTAGGcataagacacacacacttaacattCTTACAAACACACCCCATGCATGAAGGTCCTGATATATGTGGACACGGATGTCAGAGGTTTGCTCTGGGTTATTTTTAAACGGTTAGCGAACAGTTctattatgtttttatttttgttttatattctCTGGGCTCGGGTTGGGTGGGATCATTTAGATTGATATGCGTgacatgtctggttctgtgtgcttgtgttatatatatatatatatacacacagtttaTATATTATGTtgcattatgtacaaaaatatatatagatatatgaaACTTCAATGGCTCAGAATCCATAACGGTAAGTTGTTGGCTCACAGAGCAGGGGCAATATTTGCTGCTGCCTAAAGAATGAAGAGGCAAGGTGGTGTGATCTCTATTGCtggaaaaatactttttttttcagCAGTCCCTTTACTATTTCCCTGTGTGTCATCATTGGTATGTTAAGGCTGTAGACCGGACTACGTGTTGTTCTATTCCTTAACTTTCTCTCTCCATTGATCATGTCACTGTGTAGTAGTGCTGTCAGTTTCTAGGGGATGCCTCCCCCACACCTGCTCTGTCTTTACATGAAGACATTTTAAAGTCATGTATACTTTTCCTTCAACTCATGTGCCAAACTCCAAATCAACAGCTAGCGTCTACCCTCTAGGCACTTGATTTGGAATTTCAGACATGGTTTCTGGCTAAATTGCGAGAAGTCTTATCTCGGCCTCTgtcactcctggctctctcttaTTGTGACCACTGACTCAGTGTTTGTCTAATATTAATCTGTTGGTCCAACGTTAATTTAACGTTAGTCTAGCGTTCGTCtccttctctgcatctctctccacCTGGACCACACAACCACCTCACTGGTACAGGCTCTGAGTCGAGCGTCTTACTTACCCAGACATATTCACACAGGTTCAatatgacaacacaactacacaatGTGTATATGTACAGTTCATATGCTCCTCACCAAATCCTGACTTATGTATGTTGTATTTTATGTTGTGATCGTGGTATGTGTATATATGCAGACCCATGTACTGTTTATGAGCAAAAACAAAGATATGGGGGAGAAAAGAAATGAAAATAAGAAAAAATCAGGGCAATATGTTGGAGATtgtagatgatgatgatgctatATCTAGCCGTATAGTTCAACCTTtacctgtacagtacagtagataacAAGTGTATTATTGTAACAATAACTAGTCATGTATAGTGTATCTATAGTTTGGAGTGCCTTTGCTTTCATACACCTTCGCCTTGCCCCCTCACCTCCTACCCCCTTCCACAACATGACCTTGCCCCCTCACCTCGTACCCCCTTCCATCCCTCGTAGGTGCCGTTTAATGACTTGCTGCCCCCCTCTGAGCTCAGTTTCAGTCTAGCGTTGTACCAATGTTAGATCAACTTGAGCATTTTCTCTTTCTCGGTATGTACACATTCTCCTTGGTGTCAACATGTCTTATTCATCCTCTGTTTTCCCTATGTTAAGGTTATGACAAATCTGTAAAAACATACATATATTGTTCGAGATTATTGACCTGATTTGAAGCAAAGTTTGCTTGAGCTCAATGTTTTTTTATGATTTCACTAGGATGCacaaatattttacacacacgcacactgtatCCAGGGTTTAAGTATGGATATGAGGATTGCCTTTTTAGGTCAACAGTGTCATTTAcattagagtacagtatgtattcAGTCAAAATGTTGCTTCTGGTATCAAAGCCATTAAGCCAATTGATGATATTGATTTTGTGACAAGCCATTCTCAGAGGAAATGCAGTACATTCTCTTTTCCttacctccttccctccctccctccgtctgagAGATATTCAGTATCACCCAAGGGGTTTGTCATGCCTCACACCCGTCCCGTCCCGCTTGCTGTAATATTTGCTTTCATTGACGTGTTGCTATCTATCCCATCACCAGGTCTGTGACCACTCCCCCAACTCCAGTTCAACCAGAGTGGACCATGTCAAATCACAtcaaaacattttcaaacagttaCCAAAAAAAGAACAAGGATAGTGGACTATAAAATATACAGACTATGGCTTCGCACACACTCTCGTGGCAGAAGAATATGCTATCTGGatttaaagaaaaaataaaagaTAAAATCCCTGTataacaatactactactactactactactactactactactagtactacttgAATGCCTCTGTTTGTGACtgacatttttatttcattttgaaatgtttgtttttattctGTGAAGGTATGCTAAATGTTCACCCCTGTAAATACTTCCCCATGTGTGCCCTGAGGAATAGTTCCCTGGTACTGTCATTTGCATTAAATAAAGAGTAGGATAGCCTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051928 lncRNA downstream 32613 25311816 ~ 25312063 (-) True G1792801
TU2051927 lncRNA downstream 32925 25299369 ~ 25311751 (-) True LOC110501616
TU2051619 lncRNA downstream 78878 25221865 ~ 25265798 (-) True G1792525
TU2051618 lncRNA downstream 118853 25221865 ~ 25225823 (-) False G1792525
TU2051666 lncRNA downstream 153315 25191157 ~ 25191361 (-) True G1792571
TU2052478 lncRNA upstream 261029 25648501 ~ 25649291 (-) True G1793311
TU2052508 lncRNA upstream 288591 25676063 ~ 25676470 (-) True G1793339
TU2052530 lncRNA upstream 322164 25709636 ~ 25710510 (-) False LOC110501627
TU2052544 lncRNA upstream 345600 25733072 ~ 25733526 (-) True G1793374
TU2052545 lncRNA upstream 346630 25734102 ~ 25734356 (-) True G1793375
XM_021579308.2 mRNA downstream 32909 25301819 ~ 25311767 (-) False LOC110501616
XM_021579309.2 mRNA downstream 32909 25301819 ~ 25311767 (-) False LOC110501616
XM_021579307.2 mRNA downstream 66044 25273868 ~ 25278632 (-) True LOC110501615
XR_005038964.1 mRNA downstream 110481 25231261 ~ 25234195 (-) True LOC118943630
XM_036959587.1 mRNA downstream 167871 25163189 ~ 25176805 (-) False LOC110501612
XM_021579313.2 mRNA upstream 2302 25389774 ~ 25416340 (-) True LOC110501620
XM_021579315.2 mRNA upstream 8578 25396050 ~ 25400976 (-) True LOC110501621
XM_021579316.2 mRNA upstream 37900 25425372 ~ 25444103 (-) True LOC110501622
XM_021579317.2 mRNA upstream 57604 25445076 ~ 25503851 (-) True LOC110501623
XM_021579319.2 mRNA upstream 266007 25653479 ~ 25658365 (-) True LOC110501625
TU2051516 other downstream 358408 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 486791 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 494924 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1017549 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1884316 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 323101 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 1881190 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2353900 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2353900 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2593192 27980664 ~ 27981379 (-) True G1795850

Expression Profile