RNA id: XM_021579315.2


Basic Information

Item Value
RNA id XM_021579315.2
length 4188
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110501621
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25396050 ~ 25400976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTTGATGAAATGAAACTAAACAGCAGAGCTGAATGTTGAGGACCTGAAGACACTTTCTCCTTATACATTTTTCTGAACACTTGCCAGTCCCCTGAACTCAGTCTTACTTTGGGATTCAAGAGGGGAAAAAAAGATAATTCAACAACACACATCATCTCAGGCATGGCATCAGCTAACAATCCACAGTCTGAAATGCAGTTAATATGCAGTATCTGTGAGGAGGTGCTCAAGAAACCAGTCACAACCCCATGTGGGCACAACTTCTGCATGGATTGTATCAGAAAATACTGGAAAAACAATGTCCTGTGCCAGTGTCCACAGTGCAAGGAGAAATTCCCTAACATATCTGAGCTACAAGTCAATACTCAATTATCTAAAATGGTTGATGAGTTCTGGAATCCATTTGTGGTAAATAACACAAGCCCCCAGGACCAATGCCTGGACCATCCTAGAGAGGTGTCCCATGATATCTGTGTTGGGAGGGAGGTCAAGGCTGTGAATTCTTCTTTTGATgcctcttactgtgagactcCCCTGGAGCCCAATCAGAGAGTCACAACCTTGAGGAGACAACAGCATGTAGAGAATCCTGAAGAACATATGTGTGAGAGGCATGGGAGATGTCTGGAGTTCAAGACCGACTACAATACCCACAACACTCTCCCTCTTAAAGTGGAAACCAGAAAGAATAATGTACAGTTAGGAAAGGCTGAAGTGCAGCAGATGATTCAGGGCAGACAGCAGAAGGTCATTGAGATCAGAAATAGTCTACAATCTAGCGGAATAAATGCAGAGCAAGAGGTAGAGAACAGTTGTCAGATCTTTAGAGCTTTAATGCGCTCCATTGAAAGAAGCCAGGCTGAACTCATTCAGGTGATTTCGGAAAAGCAAAAGGAAACTAAAAGGCTGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAATCACTGACCTAAAACTCCTCCAGAGCTCACCATCCCTGTGCACCTCTCCACCCACCAAGGACTGGTCTGAGATCAGGGTTCAGAGTATTGAGAATGTCGGCATGGTGAGGAAAGCTGTGAAGAGAGCTGGCTCTCAGTTTGAAGACACACTGAAGAGTGAATTGAAGAGGTTGTGTGAGGCTGAGCTCAAGGTTATTCAGCAGTGGTCAGTGGATGTAACTCTGGACCCTGATACAGCTCATCCCAATCTCACTCTCTCTGAAGATGTGAAACAACTTAGACATCCCGGTAGACGACAAAACTACCCTGGCAATCCAGAGAGATTCTTCTATATTGCCAGCATCCTGGGAAAGGAAGGCTACTCCTCAGGAAGATTCTACTACGAGGTGCAGGTGAAGGGAAATACTCTCTGGAGTGTAGGAGTGGCCAGAGAGTCCATTAAAAGAACGATTCATGTAGCAAAGCCTGAGAATGGACTCTGGACTATCCAGCAGGGGAAAGGGAACGTCTACAGGGCCTGCACCACTGACCCTACCCCCCTCTCCCTGAGTGAGAAGCCCCAGAAGGTGGGGATCTATGTGGACTATGAAGATGGTGAGGTCTCCTTTTACAATGCCCAGGCCAGGTCTCATATCTACTCATTTACCGATTGTTCCTTCACTGAGAAACTTTACCCGTACTTCAACCTTGGGGTTTGTGGCATTGACAAAATGTCAGCACCGTTGATCATCTCTCATGTGAGCCAATCAGATTAAGATTTAACTCGTATCGATTAAATTCTAAAGTAAACTGAACATTCCATGCATTGATTTATATTGAATATTTAGAGAGGTATATATTGTATCTTACCAGGAAATCTAGAATCACATTTGCTGGACTGTATTGTGATGTCCTTTACGATTGTATGATGACATACTGAAAATGCAGCTCATTACTAATCCTGCCCCAATATGTCTCTGTATCTAATTTATGTGGATACTTGTGgatactttatttttatttttatgtggaTACTCTGAAATGTGCATACTTTTTTCAATGGCTTTTGTTATTTGGGCAAGTCCTCAAATAATCTTCTGGGCTACAGCACAATAAAAGCTTTGTGAACTCCTACATAATATGAACAGGAAGTGTGAATGTATTAGATACATGTCAACCATAATACATGGTTCAGCTGAGAGAGTCCTGTCATGTGAAGGGTTAATTCAGCCATGTACTGTTCCTTTAAGAGCAGCTGCATTTCAGCTTAGCAGTAAGGGACCTGGACAAGCCATGGTAATGTCACCTTCTAAAATGAGACTCGACTAGAGAACTTTGTGCTTTAGCATGACAAAATCCCCTCACAAATCTCTCTACACAGCCTAATAGAGTACAAAAGAAATCGTCGTTGACTTGCTGTTCTTCTGAAGACAGAGACCCAGACATGGCTTCCGCCAGCAGCCTGCTGTCCGAGGATCAGTTCCTGTGCCCCATCTGTCTAGACGTGTTCACCAGCCCAATCACCACCCCGTGTGGACACAACTTCTGCAAGGACTGCATACATGGCTACTGGCATATCACCAGCCCGTGCCAGTGTCCCATGTGTAAGCAGAAATTCAGCAGAAGACCTGAGCTCAAAGTCAATACTTTCATAGCTGAGATGGCCGATCAGTTCAGAAGGTCAGTTGAAATTAGGGCTACTGCTACTAGTACACAGTACCAACCCCAAGCAGCCCAACCTGGAGAAGTGCCCTGTGACGTCTGCACTGGGAGGAAAGTCAAGGCCTTGAAGTCCTGCCTGGAGTGTCTGgcctcttactgtgagactcacctAGATCCTCACCATATACTGGCCACCTTCAAGAAACACAATCTGATTGAGCCTGTGATTAACATAGAGGACAGAGTGTGTAAGCGGCACCAGAAAATTCTGGAGCTGTTCTGTAGAAGTGACCAGACGTACATGTGTCAGGTTTGCACTGAGAAAAGACATAAGAAACACAATGTTGTCCCTTTGGAGGaagaaagcagagagaggagggctcAGCTGGGGAATATGGAAGATGTAATGCAGCAGATGATTCAGGGTCGACTGCAGAAAGTGAAGGAGATCAAACACACAGTACAATCAGGCAAaataaatgcagagagagagattagggagAGCTTGCAGGTCTTCACTGCTCTGGTGCGCTCCATTCAGAGAAGCCAGGCTGAGCTCATTGAGGTGATTGAAGAGAAGCAGAAGGCAGCAGAGAGTCGGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAATCACAGAGCTAAAGAGGAGAAGCACTGGGGTGAAGCAGCTCTCACTCACTGAGGACCACCTCCACCTCATCCATAGCTTCCCATTCCTGTGCACCCCTCCACCCGCCAAGGACTGGTCTGACATCAGAGTTCAAAGTGTTGTGTACgtaggaacagtgaggagagCTGTGAGGAGAGCTGGATCCCAGTTTGAGGAGACACTGAAGAATGAAGTGAAAAGATTATGTGAAACAGAACTTACAAGAACTCAGCAATGTGCCGTGGATGTGACGCTTGACCCTGATACAGCTCACCCTAAACTTATCCTCTCTGACAACGGTAAACAAGTGGCCCACGGCAATACAGCGCTGAACCTCCCTGACAACCCCGAGAGGTTTTACCCTGGTATCAGTGTCCTGGGGAGGGAGGGCTTCTCCTCAGGGAGGTTCTACTACGAGGTGCAGGTGAAGGGGAAGACAGAGTGGGACATAGGAGTGGGGAGAGAATCTGTCAACAAGAAAGGAGGGAATACCCTAAACCCTGAACATGGCTACTGGACAGTAGGCCTGAGGAACAGGACTGAATACTGGGCTCTGAcgacccctcctgtccccctgccACTGGTCGATAAGCCCCAGAGGGTGGGGGTGTACGTGGACTGGGAAGGGGGGCAGGTGTCCTTTTACGATGTGGATTCCAGATCTCATATCTACTCGTTCACCGGTTACATCTTCGCAGAGAGACTCTATGCATACTTCAACCCGCGAAAGAATAACGGTGGGGTCAACTCAGCGCCATTGGTGATCTCTCCTGTCAGTGACGTTACCTCCTCACCTTAACCGTTCACCTATCACCTCTTCTTAGAATAGGACACCGAGTTCTGTGCCAGTTTTATTTGTTAAAGAAGCTTGTGCCACAATATATTTTCTCTATCTcttgtattgtgttgttgattTAATAAAGATATAATTCATATTAATAAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051909 lncRNA downstream 34856 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA downstream 34856 25344679 ~ 25361194 (-) True gsk3ba
TU2051928 lncRNA downstream 83987 25311816 ~ 25312063 (-) True G1792801
TU2051927 lncRNA downstream 84299 25299369 ~ 25311751 (-) True LOC110501616
TU2051619 lncRNA downstream 130252 25221865 ~ 25265798 (-) True G1792525
TU2052478 lncRNA upstream 247525 25648501 ~ 25649291 (-) True G1793311
TU2052508 lncRNA upstream 275087 25676063 ~ 25676470 (-) True G1793339
TU2052530 lncRNA upstream 308660 25709636 ~ 25710510 (-) False LOC110501627
TU2052544 lncRNA upstream 332096 25733072 ~ 25733526 (-) True G1793374
TU2052545 lncRNA upstream 333126 25734102 ~ 25734356 (-) True G1793375
XM_036958976.1 mRNA downstream 8572 25344676 ~ 25387478 (-) False gsk3ba
XM_036958977.1 mRNA downstream 8575 25344676 ~ 25387475 (-) False gsk3ba
XM_021579311.2 mRNA downstream 8576 25344676 ~ 25387474 (-) False gsk3ba
XM_021579312.2 mRNA downstream 8578 25344676 ~ 25387472 (-) False gsk3ba
XM_021579309.2 mRNA downstream 84283 25301819 ~ 25311767 (-) False LOC110501616
XM_021579316.2 mRNA upstream 24396 25425372 ~ 25444103 (-) True LOC110501622
XM_021579317.2 mRNA upstream 44100 25445076 ~ 25503851 (-) True LOC110501623
XM_021579319.2 mRNA upstream 252503 25653479 ~ 25658365 (-) True LOC110501625
XM_036958986.1 mRNA upstream 308623 25709599 ~ 25727900 (-) False LOC110501627
XM_021579323.2 mRNA upstream 308623 25709599 ~ 25743495 (-) False LOC110501627
TU2051516 other downstream 409782 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 538165 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 546298 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1068923 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1935690 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 309597 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 1867686 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2340396 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2340396 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2579688 27980664 ~ 27981379 (-) True G1795850

Expression Profile