RNA id: XM_021579316.2


Basic Information

Item Value
RNA id XM_021579316.2
length 3015
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110501622
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25425372 ~ 25444103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCCCCAATGCAATTATAAGGtctaatacatccacagtttgtATTTTTGTAAAATTAACTAACACTTGTCTTTTAACATTACAACCTTGTTTGACATGATCTAGTGCAAATGTGGCGTGCTTCCACTTTTTTCCTCCGTTTGCATCAGTTTCAACGGCGACTTTTACTTTGAAGGCAATTCCACTACTGTCGCTCACGGTAATGTTGTTCATGACACCCACATGCAACTCGGGCCATTGGCATTGGACTCCTCTCTTTATTTGGAGAACCACAAAGAGTGCAATCACCAGTGTGTCCACAATATTGAAGAGTAGCCTACGCTGCGAAATGGATTTGCATGAAGGAGCCGCACACGGACATGGTGAGGGTGTTTTAGACTTGTCGCGTCTGAATTTGAACACTTTGAGCTTGGTCGAAATCAGCGAGGAGCGAAAGATGGGCACCAAGCAGTTGTATCTAAGCTTCAACCGACTGCCCTCGCTTCCCGGATCGGTTTGCATGTTCTCCAACCTCGAATTTCTTGACATTAGCAACAACGGACTATCGGTAATCTGTGAAGGCATTTCTTGGTTAACGAAGCTCAGAACACTAATAGCCAAGAACAACCGTCTGGACGAATTCTCGCTTCCCAAGGAGTTCGGGTCTTTGCCGTTGGAGGTGTTGAATCTAAGTGGCAATAGGTTTGAGGAGATGCCAGCGCAGTTCCTAAAGTTGCAGCGGCTACAATCACTTTCCCTGGGGGGAAACAGACTCCAAAGTATTCCTGCAGAAATTGAGAATTTAACCAGtcttgAGATGCTGTATTTGGGTGGTAACCTGATCACCTCTATTCCTCCTGAGCTGGCCAACCTGCCCTACCTCAGCTATCTGGTCCTGTGTGACAACCGCATACAAGGTGTACCCCCGCAGCTCACCAGgctCCACTCCCTGCGCTCCCTGAGTCTCCATAACAACCTGCTGACCTACCTGCCCCGGGAGATCCTCAGCCTGGTGCGCCTGCAGGAGCTCAGTCTTCGTGGCAACCCCCTAGTCGTGCGCTTTGTCAAGGAGATGACCTACGACCCCCCATCACTGCTGGAGCTGGCGGGTCGTACCATCAAGAGCCGGAACGTTCCATACTCGTCCTGCGACATGCCCTCTCACCTGTTGCACTACCTAGACCTGGCCAGCAAGTGTCCCAATCCTAAGTGTGCCGGCGTGTACTTTGACTCGTGCGTGCGCCACATCAAGTTTGTGGACTTCTGTGGGAAGTACCGGCTGCCCCTCATGCACTACCTGTGCTCCCCAGAGTGCACTTCACCCTGCAGCTCCAACCCCCAGAGCGACGCCGAGTCAGAGGATGAGATCAGCGTGCCCGCCTACCGCCTGCAGAGGGTGCTGCTGGGATAGCAGGAAGTGGAAGGGCCTCCAGTCCTAACCATATCAATAGCCTCAGAACCCGTCTTTCTCTCTGTGACTGGACGGTACTGTAGGGATGAAATCTGACCCCTCTGGTCTCGTGTGTGTTTGATGCAAGACGCTAGATGCACAAGCACAAAGACATaccctcacacacaaacacactcacatgtGAGAGATATCCGGTTGTCAATGTGGACCTAAACCAGGACAAATGTCTTTAGTTGGGTATGTCCCCTGGAACCCATTGACTCAGTCACTTTAGCCATCTAAAACTGGGGGACAAATGATGGGAGGGATCTTACCTCTATTTCTCAGTAACACTACAGATCACTGATGCCTTCAGACTTTGAGCAGTGCCTTTAACAGATGAAGCATTTCACTCCATTCCTGATGGTTTCATGGGTAAACATAGGAGGGCAGTAGAAACCATAACTTTGCCAACTCGCTATGTGAGCTATTGAAAGGTGTTTCATGATTTTAGAACACTATCACACCATTCCTTAGAGTCAGGTTATGAACAATTTAAGATTTCTAATTGCCTGAAAACAGGAAGTGTGTGCCCCGGTTCTTTGTAAAAGCTTTgtttttctctcacacacaggaaGTCGATCTAGGCCAGGCAGAGTGTGAATAGACTCCTGAAAGGAGAAAATCAAACGTATCTGACAAGATGCAATGAACGTTTGTATTTCCAGCTCTTGGTTTTCTCTAAATTTGACAAATATGTATTAACACTTTGTATGTGGGAACATTTAGACAACTTCTCCAGAAGGTACATGTTTAAGGTAACCGGAAGAATAATACAGTAGCTGGCCTTTCAATAATGCTGGTCTATTGTTACAGTATCATGTAGAAGTGCTTTtgaatgtatgtgtatatacCTTATTGAAGAGGGAAGGAATTCTAGAAAGAAAACAAAGTGAGaaaagaacaaaacaaacatttttctTGTACCCTGAAATATGTAACAATTCACTTTTTTTAATTTTCTATTTATGATCCATTAAAACTTTACTTGACACCTAGTGTCATAACATGTTATGAAACattcataacagctgacataacctgtcgtaacactgtcatgacacatatttAGACCTCTTGTGacatattgcattattttattGCTGGTTATGACCCCTACATAAAACCTACCACAAAAGGCAAAACATCCATTACACCATAACCTACATCAACTGTATTTTTATGTTTatataacattttctgaaatgtaccctattaaattatcattgtaattgtgcacacattgatgtcagacatgcagcTACCACAATgttctgttgctgatgactgggatcagatttcaggagcaggactgATGACTAACATAGGCCTATCATGTACATGCCCTTATCTGGCATATATGATactgatggtcataatgcttcttgacagtgtcgaagtgtattttcttagtccaagtaaagtgacataGGATGGTCATAGTGCTTCTTGACAGTGTTGAAGtatattttcttagtccaagtaaagtgacataGGATGGTCATagtgcttcttgacagtgtcgaagtgtattttcttagtccaagtaaagtgacataGGATGGTCATagtgcttcttgacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051909 lncRNA downstream 64178 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA downstream 64178 25344679 ~ 25361194 (-) True gsk3ba
TU2051928 lncRNA downstream 113309 25311816 ~ 25312063 (-) True G1792801
TU2051927 lncRNA downstream 113621 25299369 ~ 25311751 (-) True LOC110501616
TU2051619 lncRNA downstream 159574 25221865 ~ 25265798 (-) True G1792525
TU2052478 lncRNA upstream 204398 25648501 ~ 25649291 (-) True G1793311
TU2052508 lncRNA upstream 231960 25676063 ~ 25676470 (-) True G1793339
TU2052530 lncRNA upstream 265533 25709636 ~ 25710510 (-) False LOC110501627
TU2052544 lncRNA upstream 288969 25733072 ~ 25733526 (-) True G1793374
TU2052545 lncRNA upstream 289999 25734102 ~ 25734356 (-) True G1793375
XM_021579313.2 mRNA downstream 9032 25389774 ~ 25416340 (-) True LOC110501620
XM_021579315.2 mRNA downstream 24396 25396050 ~ 25400976 (-) True LOC110501621
XM_036958976.1 mRNA downstream 37894 25344676 ~ 25387478 (-) False gsk3ba
XM_036958977.1 mRNA downstream 37897 25344676 ~ 25387475 (-) False gsk3ba
XM_021579311.2 mRNA downstream 37898 25344676 ~ 25387474 (-) False gsk3ba
XM_021579317.2 mRNA upstream 973 25445076 ~ 25503851 (-) True LOC110501623
XM_021579319.2 mRNA upstream 209376 25653479 ~ 25658365 (-) True LOC110501625
XM_036958986.1 mRNA upstream 265496 25709599 ~ 25727900 (-) False LOC110501627
XM_021579323.2 mRNA upstream 265496 25709599 ~ 25743495 (-) False LOC110501627
XM_036958985.1 mRNA upstream 265496 25709599 ~ 25743851 (-) False LOC110501627
TU2051516 other downstream 439104 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 567487 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 575620 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1098245 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1965012 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 266470 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 1824559 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2297269 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2297269 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2536561 27980664 ~ 27981379 (-) True G1795850

Expression Profile