RNA id: XM_021579321.2


Basic Information

Item Value
RNA id XM_021579321.2
length 6030
RNA type mRNA
GC content 0.58
exon number 11
gene id LOC110501627
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25709599 ~ 25744218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAGTTATGGATATAATGTAGTAGGACCGCTGGAAGCTACGGCGAAAGGGGGGGAGACATTTCTGTTTATAACATTGGTCGAATAATGTAGCTATTTCATCGCTACAATTAGGCTAGAGAACGTAGCCTACTAAGCGAAGCAAGCCGGATGAGTTATTCCAGGTGAGTTTTCGGGGAAAGTGTCGCTGTGGCCGCTCACCTCCTGGCAAGGCTACACGGGGGTCCTCCTCCCGGGGACATCTCAGTCCAGTATCCGCTCTACCTACCTCTGTCCCCGAAGGATGGCCACAAAACCCAGCGTACCCGGTCTGACAAGGAAAGATCGTTTCTTCTCATCAAcggtgtgtgtttgtctgcagtGACCTGTGAGGGTGTTGCCAGTGACAGAGCAAGGATCAACTCCTGCCTTCAGCCTGTCTTTGTCTGAGTGGGAGGAGTCAGGGTTCAAAGGTTGTGACTCTGAGGACCCGCGGGCTGTATTTCCATATGAGGCCCTGCTGAGGGGGCTGGGGACCAACCGAGGTTTTGGAGTAACACACGTTTCTCTTCCCGCTGCAGGGATGGCCACATCTATATCATGACAATGATGGACATGAGTGCCCAAGGGCTGTGAGAGCCTCTTGGGGAAACTTCATGCACGAACCCACTCTCTtcctcacacagaaacacacactctctctgacacacacacagtcttattgagacacactcactcacacacacacacacacacagagcatgttGGAGGTCCAGGAGGAAAGGCCTGCCACAGCAGGAGGGACGGCAGCAACACACTTCAGCAAGAAAGAGCGAGGGAAGAAGGAACGAGAGGAGGCCAAGGACAGCCGGGGGAATCTTGGGAATATCGGGAACAGTATTCCAGGTTCGGGTGGCCGAGGGAACGGCAGAGGGAaagcccctcacacacacacaggcagcccCCACCAGCTCATCACCCCACCCTGCTCTGTGGTGCTGGGAGCCCCCTCCATTCATCACAACAGACTGAAGAACTCCCCATCCACCAACACACAGAGtcctAAACCCAAGCCAGAAGTCATGGTGCGCTCCCCTCCTGTCATGTCTCCCTCCGGTGGTGCCGCCCAAATGGACTCCAAACTGCCCAATCAGAACAAACCAGGCAGCCAACTTCAGGCTTCGCCCTGCGACCTCAAGACAGTGGGTGTTAAGGGCTCCCAGCAGGGGGGTGTATTGGGGACGGGTCCAGGGGGCATGGGGGGGCTGAAGAACGGCCAGGGCCTGACCTCTGGGGGACAGGGGTCAAAGGTGAAGGTAAAAAGAGAGAGGAGCACCTCGGTGGAGTCCTACAACGAGCAGCAGCCAGACACAGTCACGCCCACCAGCGATGACAAGGacagtaacagggtGAAGAGGATGTGTGTGGCTGAGAGGAGGCAGCCCTACAGTGGAGCTGACTGGTGCTCtggaggagagagtgatgaggacGACAAAGGATtcttcaACTGTAACTCCAGTGACGTGAAGCCCCAGGACTCCaactcccatcctccctccaacGCCGGACTCAGCCGCTCTTCCACGCCCTCCCAGAATCCACTAGGAGGCCAGGGCGCAGCGTCGGAGTCGGCGGGTGGTCAGAAGGCTGGGTCTAAAGTGGTTTATGTCTTCACTACAGAGATGGCCAACAAGGCAGCCGATGCTGTTTTGACAGGACACTCAGAAAACATAATCAACTTCCACATGAAAAACATATCCAACAGCAAGGACAAGACCCCCCTCCCACCCCTGAACAATCAGACAGGACCCCTCCGAGGTGACTCCAAGCCCTCTCAGCAGTCATCTCACCCCTCAGACCAGAACCACCAGACAGTGTCTAAACCTGGCATGACTGATCAAGCTCCACCCCAGCCCCCTCCCCAGGGGATTAAGCCTGGTTCACTCACCCAGGATGGGGCCTCCTCAGCAGGCATGGACCCCAAGAAAATCCCTGGTAATACCATGGGTCCAGGTGACCAGGCCCCTGGGTGCCAGCCTCAGTCCGAACAGGGCATGCCCCCTGTGAACCCCCCTCAGCCTGGGGAAGGAGGAGGTCCGGGATCAATGGGGATGGGTCACCCTGGTCTGAcaccccagcagcagcagcagcagcaactggCCCAGGAGCTTCTCAACATGGAGGCCAATACCGAGGGACTGTCCCAGGAACAGCTGGAGCACCGCCAACGCTCCCTCCAGACCCTCCGAGACATCCAGCGCATGCTCTTCCCTGACGACCGCGACGCCCCACCGCCACCCGGCCCCCATGGGGGACCCCCACAGCCCCACGACGGCATGCCTGATGTGGGACCCAGGAGGCCGGAGCAGGGCCCTCTCCAGGCCATGATGGCCCAGTCCCAGAGCCTAGGTCCACCAGTGGGACCAGGAGGGCCCCGACCCCAGGGACCCCCATTCGGCCCCCTGCATGGACACCCCAGAGACATGCCCCCCTTCCCAGATGAGCTGGGTCACATGATAGGTCCTGGGGGGTGTGGAGACGGAGATCACATGACCCCTGAGCAGGTGGCCTGGCTGAAGCTGCAGCAGGAGTTCTacgaggagaagaagaggaaacaGGAAATGCATCACCGCCCACTTCCTCCCGACATGATGATGCATCCCCACGGGCCGCGCGGCATGATGAGAGGACCCCCACCTCCCTACCAGATGGGCCCCGGAGAGGTGTGGGGTCCAGGGGGGCCGGGAGGGCCGGGAGGGCCATCAGAGCACTACCAGGAGCGCATTGCCATGGGCCCCAGAGGGATGCCGCCTCACATGCAGAGGATGCCAGGGTTCCCCCAAGGCATGATGAATCCTGATATGGAGGGACCCCCCAGGCCCGGGATGGGCTGGCCTGAAGACATGCCCCCCAGAATGGGGGATGGCCGAGGGTTCCCAGGAGGGCCAGGGGGGATGTTCGGAGGTCCAGGGTTGCGGGGAGAGCGCTTCCCCAACCCCCAGTCAGTCCAGGAGGCTATGTTTCACCAGGGCATGGGGGGCGACAAGGGACCGGGCCTTCCTCCACAGATGTTGATGGAGATGCAGAGGATGATGGGACACCAAAGAGGCGGCATGGAGCCGGGCAACGGGGGCGGGATGATGTTTCCCAGGATGCCTGGCGAGGGCCCCATGAGCCCCTCCTCCAGACTGGCTGTGATGGGGGGCCGGGATATGGGCCCTgagtttggcatgggcccccatGGGAACCCCCAACTACGAGATGGGCAAATGAATATGAGCCCAGACGAGATAATGAGAATGAGAGGGCCTCCAATGGACAACATGGGGCCCCAGGGAAGGCAGATGCAGGGGTCCCACTTCCCTGACCATCCCCAGCCAGGGGACTTCCCCATGGGGCCCGGACGGCCCTTCCCTGGGGGTCCTGGAAGTATGAGGGGGCCTCATGGAGAGCAGCCCTACCGTGGCCCGGAGCACAGGACCACGCCTACGGCGGGCAACGGCCGACTCAACCACCTTCCCCCCGCCGCCGGAACACCCCAGGGCCAGAGGGGACGTAAGCCTGCAGAACTGAACATCCAGTCAGGAGGGGCCAGCTCGCCCAGTCTCAATCCCCTCAAGTCCCCTCCTTTGAGGCAGGTGCAATCCCCCATGATGGGCTCTCCCTCTGGGAACCTCAAGTCCCCCCAGACCCCCTCCCAGCTGGCTGGTATGCTCTCCGGCCCTCCGGGACCCAACGGCCCCCCTAACACTACCAACTCGGCCCCAATGAAGTCCCCTCATTCTATGATGGGGTCTGCTGGTGCCTCCCCAGTACATATGAGGTCCCCGTCCCTCCCCAACCCTTCTCCAGGGTGGGCATCCTCCCCCAAACCCCCCATGCCCAGCCCAGTACTCCCCCAGCAGCAGGGGGGAAAAACCCCCCTCAGTATGACCTCACCTAACATGATGGGTAACATGGAGCAAGGTGGTAACGTCCCCCCCTCGTCAGGAGCCCAGTCTGGCCCCATGCCCCTCCAGGGGGGTCCAGGTGGCGCCCCGACCGGCAGCCCCTATTCCCTCCCCCCCGAACCCACGCTATCCCAGAACCCCCTCTCCATCATGATGTCACGCATGTCTAAGTTCGCCATGCCAAGCTCCACCCCCCTCTACCACGACGCCATCAAGACGGTGGCGAGCTCGGACGACGACTCGCCCCCCGCACGCTCCCCAAATCTACCCCCCATGAACAACAATGGTATGGGAATGAACCAGCACCAAGGTCCTCCTCGTATGATGGGCCCCGGCTCCTCTAGCTCAATGCCTGCCCTCAGTCCTCTGGGTATGACCCCCATGggctcccagcctctctcccacGGCATGCCCCAGCAGATGCCTTCTCCCAACATTGGCCCGGGCATGATGCCCCATGGCATGATGATGCCCCCCAACCCCCAGGACCAAGGCATGGGCAACCCCCAGATGATGCCCCAGGGGCGCATGGGCTACTCCCACCGAGTGCAGGGCTACCCCCTGCCCCAATCCCCCTCCCAGCAGGGTCCCTTCTCCCCCCACAATGGCCCCGGGCCCCAGGGCTTCCCAGGACATCCCATGGGCTTCCAGGGAGAGGGGGGTCCTATGGGCGGTCGGATGGGGAACATGCCCCATGGAGGGGGAGGCGACGGGGGTAGGCCCAACAATCCTGGAGGACCGCAGTTCAACATGCAGGGAGAGTTTAGTGATGCAGATCTGCATGAAGTGATGCGAACAGGAGCATCCGGTATGCCAGAGTTTGACCTGTCCAGGATCATCCCATCAGAGAAGCCCAGCCAGACTCTGTCCTACTACcccaggggaggaggagatgggccTGGCCCAGGGGGGAAACCTCCACACATGCAGGGGATGATGCAGGGTATGATGGGGGAGGGCCCGCCCAGGATGGGTATGTCCATGCAAGGGATGGGGGGGATGGCTGGGGGGCCGGGAGGTGGTATGGCCCCCCAGGACATGCCCATGGGAAACCCTTCCCACAATCATATGCGGCCGCATGGACCCCCAGGGTTCATGGGTCAGGGAATGATGGGGCCCCAGCACCGGATGATGTCACCGGGGGGTCCGGGGGGCATGAtgcaggggaaagagaggggggtgcTCTACAACCACCCTGGGCCTGGGGGGTCGCCCAATATGATGATGTCACTACAAGGCATGGGTGCCCCCCCCCAGCAGACGATGATGATGGGGGGGCATATGAGGCAGCGTGGCAGGGACATGGACATGGGGTTCAGCCCAGGGCCCGGAATGTTCTAACACACAACTCATAGAATCTTGGACCTTGAATGTTCTGAGCCGATATACAGTATGAGGATGGAATAAGTCTCACAGCAGATAAGAGATGGATTAAAACGCAGGAAGTAAGGAATGAAAGACAGAGGTGGGTTCTCTGGATTGAAACATGTAGTGCAGAGGAATGGGTAGTTAATGGCTTGTGGGAGCTACATAGCCCAGTACTTGTCTTTTACCACAAGCATTTCATTTAGTCTCTTCAGAAATGTCTGAATGTATGGGATTGCTGTGCTTCAATGTCAATTTAAACTGTtcaagtgttttttttcttctaaatctCTGATTATAAGGGTGAGTTGAGCATCGGAGAGGAATGGAGTGAACCACCTTGGAGGACTGTACATCGACTTTTTCAAATCAGTTAAAAATCAACAATGGATTTGTCCGGTAATGGATAACAAACATAGAAAGACTTTGTGGAATAAAATCGTACTTTGAGAAGATTTCAATGGAACTCCCATCTTCTCTCTGGCTCCATCGTTTTGACTATTTCTGTccagtatgactgtgtgtgtatgcgcctgtgtgtgtgtttttgttgtaaGTATGTATAGGGATTCTATCAATGACCTCTAAGCTCTCTTATCCACCTTTCATTGGGGGAGGGACGCCCCACTAAAGAACAGTACTGTTTTCCATTCATTTCCTTTGTAACTCCAGTGTATAACAAACCAAACTATGACCTCAAAGATACTAGTATTATTAAAAAAGCACAAACATGGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052508 lncRNA downstream 33129 25676063 ~ 25676470 (-) True G1793339
TU2052478 lncRNA downstream 60308 25648501 ~ 25649291 (-) True G1793311
TU2051909 lncRNA downstream 348405 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA downstream 348405 25344679 ~ 25361194 (-) True gsk3ba
TU2051928 lncRNA downstream 397536 25311816 ~ 25312063 (-) True G1792801
TU2052531 lncRNA upstream 62199 25806417 ~ 25807803 (-) True G1793361
TU2052525 lncRNA upstream 67117 25811335 ~ 25813715 (-) True G1793356
TU2052608 lncRNA upstream 175052 25919270 ~ 25919512 (-) True G1793433
TU2052786 lncRNA upstream 376367 26120585 ~ 26120802 (-) True G1793593
TU2052787 lncRNA upstream 377160 26121378 ~ 26121658 (-) True G1793594
XM_021579319.2 mRNA downstream 51234 25653479 ~ 25658365 (-) True LOC110501625
XM_021579317.2 mRNA downstream 205748 25445076 ~ 25503851 (-) True LOC110501623
XM_021579316.2 mRNA downstream 265496 25425372 ~ 25444103 (-) True LOC110501622
XM_021579313.2 mRNA downstream 293259 25389774 ~ 25416340 (-) True LOC110501620
XM_036958988.1 mRNA upstream 25715 25769933 ~ 25789301 (-) False LOC110501630
XM_036958989.1 mRNA upstream 25715 25769933 ~ 25789301 (-) False LOC110501630
XM_036958990.1 mRNA upstream 25715 25769933 ~ 25789301 (-) True LOC110501630
XM_036958991.1 mRNA upstream 47600 25791818 ~ 25799766 (-) False LOC110501631
XM_021579329.2 mRNA upstream 47600 25791818 ~ 25799792 (-) True LOC110501631
TU2051516 other downstream 723331 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 851714 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 859847 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1382472 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 2249239 23432994 ~ 23460360 (-) True LOC110501997
TU2054267 other upstream 1524444 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1997154 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1997154 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2236446 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 2265437 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile