RNA id: TCONS_00051331


Basic Information

Item Value
RNA id TCONS_00051331
length 503
lncRNA type lincRNA
GC content 0.29
exon number 1
gene id XLOC_026323
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23686198 ~ 23688287 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTTTTTACAGCTTCATTTGCTTCTGTAATAAATTACTGCAGAGCGGTTGAAAGCAATATCTCACCCAAAATCTTCACCTTTGTCTCAATGTAACAAATTCCGTTTAAGCATTGTTGACTatgtacagtgttaatgtttatATTACGGGTTGATCTTTAACGAGGTAGCCGCATTTTGTTCTTTCTCGTGCATCTTTTTAAAAGGATAAagagttgttgttattgttggtGTTGATGATGATGTTGCTTTGTGTAAAGCGTGATTAGCACTTGGCTTTAGTAAACTGCATGTAAACGTTTTAGACATTGTGTTGTGAATACTTTCttgaatatagtttttttttcaattacacaAATATCATATCTTTGTAAATAGTGATTCTTATAcgaaattattaatacaatttatatgaatattttagttactttttatttgtGCTTTGTCAGAGCAATTCAATAAtctattgtgtttattttgttaataaagcattttctGAACAAA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153505

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051327 lncRNA downstream 89358 23594455 ~ 23596840 (-) True XLOC_026319
TCONS_00051323 lncRNA downstream 111555 23541377 ~ 23574643 (-) False XLOC_026318
TCONS_00053007 lncRNA downstream 358645 23323244 ~ 23327553 (-) True XLOC_026312
TCONS_00053006 lncRNA downstream 358825 23323244 ~ 23327373 (-) False XLOC_026312
TCONS_00053005 lncRNA downstream 445477 23237515 ~ 23240721 (-) True XLOC_026311
TCONS_00053010 lncRNA upstream 14586 23701286 ~ 23703718 (-) False XLOC_026322
TCONS_00053011 lncRNA upstream 14586 23701286 ~ 23710574 (-) False XLOC_026322
TCONS_00053012 lncRNA upstream 14586 23701286 ~ 23859769 (-) False XLOC_026322
TCONS_00051332 lncRNA upstream 14586 23701286 ~ 23860939 (-) False XLOC_026322
TCONS_00053013 lncRNA upstream 14586 23701286 ~ 24050064 (-) False XLOC_026322
TCONS_00051330 mRNA downstream 42368 23641938 ~ 23643830 (-) True XLOC_026321
TCONS_00051329 mRNA downstream 42447 23641935 ~ 23643751 (-) False XLOC_026321
TCONS_00051328 mRNA downstream 81802 23599290 ~ 23604396 (-) True XLOC_026320
TCONS_00051326 mRNA downstream 89389 23584663 ~ 23596809 (-) False XLOC_026319
TCONS_00051325 mRNA downstream 89666 23581614 ~ 23596532 (-) False XLOC_026319
TCONS_00051339 mRNA upstream 386020 24072720 ~ 24093144 (-) True XLOC_026326
TCONS_00051340 mRNA upstream 515256 24201956 ~ 24205339 (-) True XLOC_026327
TCONS_00051341 mRNA upstream 627997 24314697 ~ 24338163 (-) False XLOC_026328
TCONS_00051342 mRNA upstream 631443 24318143 ~ 24337814 (-) True XLOC_026328
TCONS_00051344 mRNA upstream 750663 24437363 ~ 24456538 (-) False XLOC_026330
TCONS_00051315 other downstream 251197 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051313 other downstream 303590 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051290 other downstream 1509070 22161451 ~ 22177128 (-) False XLOC_026304
TCONS_00051287 other downstream 2069158 21616920 ~ 21617040 (-) True XLOC_026301
TCONS_00051260 other downstream 2687838 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051337 other upstream 131222 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051343 other upstream 716449 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051348 other upstream 1059066 24745766 ~ 24745881 (-) True XLOC_026332
TCONS_00051354 other upstream 1392749 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051368 other upstream 1587442 25274142 ~ 25275351 (-) True XLOC_026342

Expression Profile

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