RNA id: XM_036958990.1


Basic Information

Item Value
RNA id XM_036958990.1
length 6757
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110501630
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25769933 ~ 25789301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTTAGAACGAGTTAGGTTGTCGTGTAGTAACCAACAGAAGGTTAcgagttaaaaaatatatatgattaTTTGATCGTCTGACTGGTTTTGCGTAAAGAGAAGAGATATGGAATGAGTCGGATACCACAGGTGCGAGTCTTGTGTTGTTTTTGGAGACATTATTTAGACATTTTTTATATTCGTGGTGATCGACGAGATACCTCGCTTCACGCGGTCGTTCAACTCGCGATGCTGGACAGATCGCTGCATCATCATGTTGCTTCCGAGTTAGCGAAAGAAATCACAAGTTACACCAGGGGGGCAGTGAGTCGTCGTCATTTAGCTACAGAGGCCACCCGACAATTGCAAGCAGAAAAAGAGGGATGCATTGGCTACATCTGTTGATTTGGCTTGTTGGCACTTCAGTGATACATTGTCGCGCCCGGTGATGTGAATTAGGAAGATCAGTAAGTGTTTACATTGTAGCCTATCACTTGTGTTTATGCCTGGGATTGGCGCGATGTTCCTCCTAATTTGTTGGGTGGGTGCGATCGTAATTAGCCAATATTTTGATTATGGGCACAGTGGCTGAATTTGGGATAAATAAAAactaaaaagcattatttttcAAACAATTTTCCTGTGAAACAGGCTAATCTATCCAGACCTAGCCTACATCGTAATCATCTGGAATATAGGCAGTTCATGTGTACTGTTATTGACTCCATCATCATCAAATGACCTCTTGGACTTGTCAAGGGAGTGCACATGTTTAGTGTCTGTTGGATTACACAATTTGTGTAGGATAGGCTATCGACTCAGACACCGGACTCTGCTCGGATTATGATCATGACCCTGGAATGTATGTATAATCGCCAAAGAGATGTTGACTCTATTGAACTATGCTGGTGACATTTCTCCTAAACTAACAAATAGTTTACATAGTCTTGTGTTGCTGACTCTTGGATAGGCTACGTATTGATTTTAGTGGGTAATTGTGCCACTGTCTCAGTACTTGGTCTGTTTTAACCACACAATGGAATACAACATAAATAGCCTATCTAAATGGGTTGCAAATGGGTTCATTTCAAAGTTCCGTTGCATCCTATGTGTTCCTGACGCGTGAGTAATCATTGGTCACAATCCACTCCTGTAACTGCATCCACGTGGAGTTCATGTAGGTCTACTTGAAAACTTTGGGTCGAGGAAACTTCCAGCCGTGACGCACAGACGGCTCCCTCTGCTGTAGTCCTGCTGCAAAAAAGTGACAGCTTTTTATTTTTGCTGTCATACAGCGAAGAGGTATTGACTCAATAAAATGGCCGGCGACTGCAACTATAAGATGCATTATGTGAATGATGACACATTTTCTCCATCCAAACCTCTACTGGACCAAGTGCGGGTGCCCGCGGGGGAGCCCGACGCCCCCAGTGTTCTGCAGGGGCGTGGGTCCGTTTATTGCTCGCCAAACTTTGACATGATTGATGGGCTGCTGTACCGTAAGAAGTTGGAGAGAGGTTTCATCCACTACCGGGAGGTGCTAGACGAGGACCGACGACTCGGGGCGATCGCCACTTTCCACCGGCGGCGGCCAGGCATGTGCCACCACTCCCTGGAGGATACGTACAGATCAGTGGCCGAGAACTACTGGTGGGAGGGGATGTACTTCCAGATCCGAGACTTTGTCCGGGGATGTCCAGCGTGCCTGGAGCAGAGGAACAAGAGACCCAAGAAGCGTGTGGGTGAGAGGCGTCTCTCTCAGACGATGATGTCACACAGCCGAGACATGCTGAGTAAACTGAGGAGCCAGCGGGAGGCGGGGCTGTTCTGTGACATCACTCTGAGGACTGACGGGTGCTCTTACTCCGCCCACAAGGCGGTGCTGGCAGCGGTGAGCGAGTACTTTCAGGAATTATTCACTGAGATGGACTCCGCCCCTAGCTCCAGGTCTGACATCGACCTCACAGGTTTCAGTGAGTCTATCCTGATGTCTCTGCTGGACTTCTCCTACTCCTctattctgtgtgtgtctgaggaggACCTTCCAGAGGTCAGCACTATGGCCCGTCACCTGGGCATGTGGCCTGCCGTGGAGGCCTGTTCTGCCCTCCAGACGGAGCAGGGCTATCACGCCGCCCAATACCCCACCATGGAGCACCCTGCCCTGGGCTTCTCATCGCAGATCCCTGGATCTCCCCTGGAGCTCCACCACAaccagaggaacaggaggaagaaTAGGGGGTTGGctggagagggcagggagagggTGGCTGAGGGTAGAAGGGTAAGGGGTGTGGATGATGGCTTCAGACAAATTCTGGATCAGTCCAATGAGTCGAGGGAGGAGAGCCCGACCAGGCGGTCACCCCGTCGCCCCCCCGGACCCAGCCCCCTCCCCCTAGGGCAGAACGGTCTCCCCCTCAGCCCCACCCGCAGGATGAAGCTCATGGACTTCAAATCTCCGTCTTGTAAAATATCTTCTTCACCTCCAAAAAACGTATTCTCCAACCCCCGCTCCCGAAACACCCaatcttcctcctcctcgcccCACACGCGTCTTCTCCGCTCTACTCCCGGGGCCGCCCAGGAAGTTCAGAGACTGCTTCCCAGGACAGAGAGCCCTCATCGGGGCCGAAAACCTCACCCTGTCCCCCATCCTGCCTCCACCTCCAGCTCCTCCACACAGAGGGCTGGCTCTGAGGCCCCCATAGTGAGGGTGaagcaggaggaagagggggaagaggatgAGAAAGATCATTTCCGAGCGCTGGAGAAGTACCGCCTGATGAGCGTGCTCGGGTTACAGAGGACGTCCCTCCTCCCCAGACCAGAGGATCTGATTGGCTGGAGGCAGAAAAAACGCCTCCGGAAGTTGAAGGTCAATAACTATTCGTTGACCAAGAGGAGGAAACCTCGCCTCCAGGCATCAGGGGGGCTTACGTTCGGGGGGCCGCCCCTGTCACTCCCCCTATGTACCCCTGCCAAAGCCCACTTCCTGAGCAGGATCATAAAAACGGAGCCTGAGTATCCAATCAGCATGGAGAGACTGAAGAAACCCAGGCAGCCCCGGCGGTTTCCGCCCAGTGACAGGAGCTTGCGCAGTAAAGTAGTGTTACCAGACCTGCTGCAGCCCGTGTCCAGGCTGGTCTACGGAGGGAGGGATCTCAGGCGCTCTGTCAGGGGTGTTGAGGCCAgccacccccctccacccctcccaccCCGTTCTGGGAACACAAGAGTTCCAAATCCCAAGAGGAACGTCTCTACTGTCAGGATCAAACCCGAACCTGCAGACTATGCCATCTCAGCACCATCCATCCCCTCAGATGGCCAACGCCCAAacccacacctctcctctcccagggCCCACCTCAGGCACAAGGTTACCACAGAAACTGTCAGAGCGCTCCGCTACAACAGCGGGCGTCCGATGGCCAAAGATAAGCTGAAGCGGAGTGGCATGAAAGAGGCTGGGAGAGCCCAGCGTAAGCCCAGAGAGGAGAGCATGAGGACCGGGAGCAGCCAAGGAGTGAGAAGGATCATGGAGAGAGGGCCTGGAGGTATGAGCAGCAGGGAGACGAGCAGCATCCTCAGCCCTgatcctgttcctcctcccatCCACAGCCATCCTCTGTACAGGGTCATCAAGGAGGAACCAGCAGACCCTCTACCTGTGGCGGGGTCCTTCCCCGAGTcaccctccctgtcctcctccccagAGCTGGGCAAAAGGCAGATCAAGCCCCCTGTCAAGCTCCTAGACCCAGGCTTCCTCTTCAGCTTCTGCCGGCCGGCAGGAGGGCCCATGTTGGGggtgaagagggaggaggagagtgtgGATATCTGCCTAACACGGTCGGTCTCAAGGGTAGAGAGATTTGGTTCCGGGGGGGCCCCAGCCAGGGTCCTGAGGGCCAGAGGAGGCCCCCCCACTCTCCACAGggtgaagaaagagagggaagaaaggagtGTAAGCCAAAGTCCAATCCAGAGGCAGGGGCCACCAAGGGCTGTCAACTCTCACCAACACAAACCCCCCCACCTGGATAGAGCCACAGGGTCAAAGGGTGCTTGCGTTGCACGGGACATACCAAAGAAGCCAGCTAAGCCCCTGCCTAGCCGAGGCCCTGCCCTGTTGGACTCAATCTGCCGGACGAGGCTAAAGCAGCTGCGGGGTCCTCGCAGTCAGGCCCCCAAGGACAAGTCATCCCACGTCTGCCTGCAGTGCCGGGCATCCTGTAAGGACTGTAACGCCCTCATCATGCACCGCATCAGGCACATCGAGGGCAAGCACTGGCCCTGCCCTCTGTGCAATAAGACATTCTTCAGGATGAGGAATGTGAAGAACCACATTCGGACCCACGACCAGAGGCTGTATAAGTGTCGCAGCTGTTTGGCTGCATCCTGAGACCTGACTGGGGAAGGAGGGTTGAAGCTGTCTACATTGACTGACGGGATGAGGAGAGGCACATTGTTAAACTGCAAGCTTAACCTCTCTCGTACTGAATGCAACGCGTGCACATACTATGGAGACATTGAAGATGTTCCGAATTTGATTGGAGGTCGGATGATTCACACTCTCCTTTTGGTTCTGTAAAAAGAATGATATGGAATAAATGTTTGCCTTTTACATTTTTGCCTTTCCTGTTTGAAATTAGAATAGTTGTTCACATTTGTTTCTTGTCTACTGTACAGTTTCAGCAGAATACAGACAGAGCAGCTATATAAACTGtgggtacaaaacattaaggacaccatctctttccattacataaattgaccaggtgaatccaggtgaaaactatgatcccttattgatgtcactagatggagaggagacgggttaaagaaggatttttaagccttgagacatggattgtgtatatgtgccctTGGGTGTGAATGGGGAAAAACTAAatgttgaagtgcctttgaactgcacagctgctgggtttttccacactcaacagtttcccgtgtgtcaacattggccagcagccttgtgagggggaggtggtgggggtttgtaactaaatattaggaaggtgttcttaatgttttgtacacggtGTATCACACTTCTCATTCTTGAGAAATGCATGTTTAATTAATGCATCAGCTTGGACATGTATTGAAAACCTTAGGGATTCACACAGTTACATAAAATGATAAGTATTCTACATATTTCAGGCACATCTTCATGGTCCTACTAACCACAGTCTGTGCTCATCCAGAGGGTTAGGAGGAACGATAGAAGGCAGGAATCGACCAGCGATGGTCACTAATCCATTTACTGTGCCCAAACAGCACATAAAAAGCATCTGCTTCTCATTCAAACATAATGATGTGATGTCACCGGTGTATTCAGAATCAGATATGTAACCATGACTGGCGTAATCCCAAGGACATTACCATGCAGTACCTGATACTACCACAAGATGGCAACCAATACTAGGTAGTAAGAATTGGCTGTGGGTGCCTCTGCAAAATAATGAAATCTTCCATCTTTACTCTTTGAAATGGCCCCCTGTAGATCTGAACTTTGGATAGGTGTATGTGTCAATAATATGGTCATACCTAATAAACAACAGACTTGCACCAACCCAGTTCTTTCAGATCTGAAAAGGCCCCTTGTCAATGGTCCATCAGGAAGTGTCTAAGGCAAGGGGATTATTTCAGACTGGGTATCAGACAGTATCAGTAATATAGTCAGCCTTCACTCAGTGGATGTGTAGTGTATAGGTGTTATGTAAATATTGCATGTTTATGAAAAAAATTCACCATCATGTTGCAACCGTACCAGAGAAGGGACAGCATAGCGTGCAAAACTGTTTATAAAACTATTTGTTCATTTCCTCCTGATAACAGCACGACATTATACCATATCATACTTACTCATACATACTCACTTCTGGGTaaaaattaagtaccttactgtgattgttttcaattaaagtgGTAGAATTTtgataggactgtctgggagtggtctgagtgtaTAGGAGAAAacaagctgttattggcagagagatttggaactctctttcaccaggcaggccaaaactccatcccaccaaaacaggctaacatttcaggcggtcttttcaatgagctcttacactaaaagggtttTATCATAATTTTTTTACAATTTCAGAGTATTATTCCAATCTCCGAGTATAATAATGTATATAACACAGAGGGAAATcctgtttttgactgcactgggcctttaaatctAGTATAAAAATGGTGTTGGAGACAAGAACTCAACTCTTCATTGCATAGACAGCATCTTGTTACTGATGGTAAGAGACTGATTGTGGTTTCTTTCTAGTTGGGTGATTAATATCTGATGTGTGTGAGGAATActgggtctggagggctgttcaaACTACATAActattacctctctctccatctgaacAGAACCTACAGAATCTACTGGGATTTATTCTCTAACAGTTCTACTTCTACTACTCATCTACACTCTGAATTACTCACTGAGGGGACTATCACCATGGCGATGTTGACCATCCTTCTGTCCTCAGTGCTGCATTTGCTCTGGGCGAGGCATGTAGTAGAGACTCCACCTCACACGTACTCCTCATACATTCATTCATTTTAGTTGTTGTACACTGTGAGACTTCAGTAAAATACCTTGAATGTGTTTTACAGAATGAATGCTGTAGATTGCACTGCATTATTGGTCAAATGCAGAAATTACTGTTATTAACTGTACTTGGAAGCCTCCAATAAAAATGACTCTAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052550 lncRNA downstream 28900 25740701 ~ 25741033 (-) True G1793380
TU2052547 lncRNA downstream 32145 25737529 ~ 25737788 (-) True G1793377
TU2052546 lncRNA downstream 32586 25737053 ~ 25737347 (-) True G1793376
TU2052545 lncRNA downstream 35577 25734102 ~ 25734356 (-) True G1793375
TU2052544 lncRNA downstream 36407 25733072 ~ 25733526 (-) True G1793374
TU2052531 lncRNA upstream 17116 25806417 ~ 25807803 (-) True G1793361
TU2052525 lncRNA upstream 22034 25811335 ~ 25813715 (-) True G1793356
TU2052608 lncRNA upstream 129969 25919270 ~ 25919512 (-) True G1793433
TU2052786 lncRNA upstream 331284 26120585 ~ 26120802 (-) True G1793593
TU2052787 lncRNA upstream 332077 26121378 ~ 26121658 (-) True G1793594
XM_021579321.2 mRNA downstream 25715 25709599 ~ 25744218 (-) False LOC110501627
XR_002470230.2 mRNA downstream 25715 25709599 ~ 25744218 (-) False LOC110501627
XM_021579322.2 mRNA downstream 25717 25709599 ~ 25744216 (-) False LOC110501627
XM_036958985.1 mRNA downstream 26082 25709599 ~ 25743851 (-) False LOC110501627
XM_021579323.2 mRNA downstream 26438 25709599 ~ 25743495 (-) False LOC110501627
XM_036958991.1 mRNA upstream 2517 25791818 ~ 25799766 (-) False LOC110501631
XM_021579329.2 mRNA upstream 2517 25791818 ~ 25799792 (-) True LOC110501631
XM_036959588.1 mRNA upstream 25520 25814821 ~ 25842967 (-) True LOC110501632
XM_021579331.2 mRNA upstream 55195 25844496 ~ 25891165 (-) True LOC110501633
XM_021579335.2 mRNA upstream 108459 25897760 ~ 25904394 (-) True LOC110501636
TU2052534 other downstream 58314 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 783665 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 912048 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 920181 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1442806 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1479361 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1952071 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1952071 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2191363 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 2220354 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile