RNA id: XM_021579329.2


Basic Information

Item Value
RNA id XM_021579329.2
length 3705
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110501631
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25791818 ~ 25799792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctatcactGTTGACTTCTCTACCGGAAGTTATGGACGAACTCTACGCGGGAAACCCATGTTGTTTTGTCTGTGCAGTCTGCTTGTCGACTGGACTCAGCAGATAAGTGAAACAGCCGAAAAACAGTAGCAGGATGAAGGTGATAACATGTGAGATTGCGTGGCACAACAAAGAGCCTGTCTACAGTCTGGACTTCCAGCACAACTCAGAGGGCCGCATACACAGGCTGGCCACAGCAGGAGTGGACACCACTGTCAGGCTGTGGCGTGTGGAGATGGGGCCTGATGGGAAGGCAGTGGTGGACTTCCTGTCAAACCTGGCGCGGCACACCAAGGCCGTCAACGTGGTGCGCTTCTGCCCCAACAGCGAGCTGCTCGCCTCTGGAGGAGATGATGCAGCCATCCTGCTGTGGAAGCTAAACGACAGTAAGGAGCCTGAACAGGCCCAATCgttccaggaggaggaggacagtcaGCTCAACAAGGAGAGCTGGAGCGTGGTCAAGACCCTGAGGGGACACATAGAGGATGTGTATGATATCAGCTGGACCCGGGATGGGAACTTCATGGTCTCTGGTTCTGTGGACAACACTGCCATTATGTGGGATGTCACAAAGGGTCAGAAGCTGTGCATCTTTAACGACCATAAGAGCTATGTGCAGGGAGTGACCTGGGACCCGCTGGGCCAGTATGTGGCCACACTCAGCTGTGACCGggTGATGCGTGTGTACAGTACTCAGAGCAGGAGGAAGGCCTACAGTGTCAGTAAGATGAGCTCTGGATCAGCTGTCGAGGGAGAGGTGAAACAGTACCGAATGTTCCATGACGACAGCATGAAGTCTTTCTTCAGGCGACTCACCTTCACACCGGACGGATCCTTTCTGCTTGCCCCAGCGGGGTGTGTGGAGGCAGGGGAGAACGTCACCAACACTACATACGTCTTCTCCAGGAAGAGCCTCAAGAGGCCCATAGCTCACCTGCCCTGCCCTGCTAAAGCCACCCTGGCTGTACGCTGTTGCCCTGTCTACTTCGAGCTGAGGACCAAGAAGGGAGATGATGGCAGTGCCCAGCCCCTGCCCAACATGTTTGGCTTGCCATACAGACTGGTGTTTGCTGTGGCATCAGAGGACTCCATCTTCATCTATGACACTCAGCAAACCCTACCCTTCGGCTACGTGTCCAACATCCACTACCACACACTCAGCGACCTCACCTGGTCTCGGGACGGTTCTTTCCTGGCGGTGTCTTCTACAGACGGCTACTGctccttcctttccttctctcctggTGAGCTGGGCACCCCCCTGAAGGAGCCCCCAGTCCTGGAGGTCGTCACCCCTGGCAATGGCCCAGAGAAGAAGGGCAAGAAGGCTGCCATGACTCGCAGGGTGTCCCCCGTCCCTAAAACCACAGAGAGCACCGCCACTGTCCACGCCATTCCTAAAGAGACCCCCAGCACCTCCCATGCCACCCCCCTGGTCCCTGGGGGTGAGGAGAATAACAACCCTGGCAAGGCCAAGCTACAGCCCCGTAGGATCACCCTCAACACCCTGGAGGGATGGGGCAAGCCCAGCACCCCCAAAGCCACTGCTGCTAATTCCCCCAAGATCCCTACCACAGCCAACATCAGcgccccctccaccccccagcAGCCTCACCTCATCGCCTCTACCCCCAACACCCGCCTCACCCCCTCTACAGCCCAGCCCTGCCTCACCCCAACGGCCCACAGAAACACTCTTGGTCCCAGCACCCCTAAAGCTAGCACCACCCCTAAAGAACCTGTCCCCAGACGGATATCTCTGACTCCCGTCGTCTCTAGATCTTCAGCTGCCTTCACCACACCCTCCTCCACGGAGAAAGCCAAACGTGAACAACCCTCTCCCCCCACCGAACCAGTGTGCCAGCCCCCAGAATCCAAGCGGCCCAAGACCAGCACCCTGGCACGCAAGACAGGGGTGGCTCCAGCCTCAAGGGCCACACCCAACCCCTAAGGACCCCTCATTGCCAAGAACCCTCTGCAGGACAGAGTGGTGTCAACATGCAACTCGCATATTatcatcctacacacacacacacactcacaagtgTCTAGCCTATAGAACTGCTTAGAGACTGGTGTGAcctaatttacacacacacactcacaaaagttcacGGAGCAAAGACTGGTGTTTCCTCCTAATGCAATTTTCTGTATATTTTTGTAATTTCACATCCTGAATTGTTCTGTAGATCATTTTATTGGATAAGCAGGTAGTTATTTAAGTCATAATGCCCGAGAAGCAGTGTTagccgtgccaatatatcctccaaacacagtCTTTGAGGGCATTATCAATTTTATACagtgggttaccaacatattcaaataaggttattttcatgaatttattcatgctatttcatccttcctcaagatatagtcccgacacaaatctagggttctacccaagccggctggtcattcgttcagtctttttgttctgtatctatgccatactggctggcaacgtccttatcccttgcttgctaacTACCAACTACGGCTACCatagtcacgtcaaacagtgcagacagaataacagtagctgcatttgtttaagctgctttctagtgacatttattttgaaacatccataacaatgagcttaTGAGACAATGTGCTCTCATCAGggcactgttgttcagaggagctagctaaAAACACAGCTACAATAACTTCAAAgggaagctggaaagactgcaaactagctttgtttcatttgaccttttttcaattgacatttctttgtttgTATTCATAAAAATTATGCCagttgattcatgatttcgactggctgagaaacgcttgCCTGTCTTTCTCGTCCCGATCCCTAGaagttcattactatgggacagctggagattgaaTTTGACTATTGaagcaaatgtcagagagacagacagcaaggttcaTACAAATCTCCATTGTTGAAAagtaaatgttagtctaaaagaaatgtgagaatgtctagatgctttttaaagtttataacttccctgcctaggctgatgagacagtggattacgCATTCAGATGGAGCAGAGTAAAtgggcattttaacatcataggtttagccagtggtaacttgtggaaagACACGGGCTGGAATGCGCTTTTAACCGATCAGCTTTctggattagacccacccgttgtataatttaaattaaaaactgtggttccagccctgaatgctgattggatgacagccatggtatatcagaccgtataccacgggtatgaaaaaacatttatttttactgctctatgctggtaaccagtttataatagcaataaggcagttctggggtttgtggtgtatggccaatataccacggcgaTGCGtagtgcctaagaacagccctcagctgtagtatattggccatatgccacACCCCCTCATGCGATAATtcttaaataaaaatgtacctggctaaaaaTAAAGGATAAGAAACAGAAAGTTACATATAAGATAAAACCACCCCAGGCCAAATTATGCTTAGCTCATGTATGAAATTGTACAATGGTCATTGACTTTAGTCTGAATGGTTGTCTGTAGTGGTATATTGGGGTTGTTTCTCCTTTTTATATGAATGTTTGTGTATTGTACTTTTGGGATTTTGGTAACACTTCAATGCAGTAATGCTTGtctaaaaaaata

Function

GO: NA

KEGG:

id description
K10751 CHAF1B; chromatin assembly factor 1 subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052550 lncRNA downstream 50785 25740701 ~ 25741033 (-) True G1793380
TU2052547 lncRNA downstream 54030 25737529 ~ 25737788 (-) True G1793377
TU2052546 lncRNA downstream 54471 25737053 ~ 25737347 (-) True G1793376
TU2052545 lncRNA downstream 57462 25734102 ~ 25734356 (-) True G1793375
TU2052544 lncRNA downstream 58292 25733072 ~ 25733526 (-) True G1793374
TU2052531 lncRNA upstream 6625 25806417 ~ 25807803 (-) True G1793361
TU2052525 lncRNA upstream 11543 25811335 ~ 25813715 (-) True G1793356
TU2052608 lncRNA upstream 119478 25919270 ~ 25919512 (-) True G1793433
TU2052786 lncRNA upstream 320793 26120585 ~ 26120802 (-) True G1793593
TU2052787 lncRNA upstream 321586 26121378 ~ 26121658 (-) True G1793594
XM_036958988.1 mRNA downstream 2517 25769933 ~ 25789301 (-) False LOC110501630
XM_036958989.1 mRNA downstream 2517 25769933 ~ 25789301 (-) False LOC110501630
XM_036958990.1 mRNA downstream 2517 25769933 ~ 25789301 (-) True LOC110501630
XM_021579321.2 mRNA downstream 47600 25709599 ~ 25744218 (-) False LOC110501627
XM_036959588.1 mRNA upstream 15029 25814821 ~ 25842967 (-) True LOC110501632
XM_021579331.2 mRNA upstream 44704 25844496 ~ 25891165 (-) True LOC110501633
XM_021579335.2 mRNA upstream 97968 25897760 ~ 25904394 (-) True LOC110501636
XM_021579339.2 mRNA upstream 145341 25945133 ~ 26001223 (-) False LOC110501638
XM_021579338.2 mRNA upstream 145341 25945133 ~ 26001224 (-) True LOC110501638
TU2052534 other downstream 80199 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 805550 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 933933 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 942066 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1464691 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1468870 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1941580 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1941580 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2180872 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 2209863 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile