RNA id: XM_021579331.2


Basic Information

Item Value
RNA id XM_021579331.2
length 8474
RNA type mRNA
GC content 0.54
exon number 37
gene id LOC110501633
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25844496 ~ 25891165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCAGGAAGTGCGCTCTCCGTGCTCCAATCGCTCTCTGTGAATCAGCTGAGTTTGGGCTTTCCACCCTGTTGCGTTTAGCATGATCTGCACGAGAGAAATTGGAAACGCACCCCCCCCACCTAACGGTTGGTTGACGGTTTCTCAAAGCTTCAGTTACAGAACGGACGCTACACCCAGAACCGTTAACATTTGCCGGTTTCCCGGGATTTAGTGACATTTATTGGACGCACGCGAATGGTCAGCTCAAACCCGAGCTTGTTTTGCAGTTGACACAGGCTGAGTATGCTGGGGTGTGAGTGAGGCATCATGGATCCCGAGGAGCAGGAGCTGCAGAATGACTACCGTTACCGTAGCTACGCGGCGGTCATCGAGAAAGCCCTGCGGAACTTTGAGTCGTCCAGCGAGTGGGCTgacctcatctcctctctgggCAAACTCAACAAGGCCCTGCAAAGTAACCTGCGCTACTCTCTGCTGCCCCAGAGGCTGATCATTGGGAAGCGTCTGGCCCAGTGTCTGCACCCGGCCCTGCCCAGTGGAGTGCACCTCAAGGCCTTAGAGACCTATGAGATCATCTTCAAGATCATCGGCACCAAATGGCTGGCCAAGGACCTCTTCATCTACAGCTCAGGACTGTTCCCGTTGCTGGGCCATGCTGCGATGGCGGTGAAGCCAGCCCTGTTGACGCTGTATGAGCGCTACTACCTCCCTCTACAGAGGGCCTTACTGCCCAGCCTACAGGCCTTCATCACTGGACTACTGCCTGGCCTGGAGGAGGGGGCTGATGTCtatgacagGACGGATGCGTTGCTACTGAGGCTGTCTCTGTTAGTGGGCCAGCAAGTGTTCTATGGGGCTCTGTGGGGCAGTGTGTTGGTCAGCCCTCTGGTCCGGCTACCCGCCTCTCTCTTCATTGTCACACACTTCGACCGCTTCACCCCACCGCGCCAGCAGAGATGCATGCTGGGCTATAACAACCGCTTGGTGaTGAAGGCGTTGTGTCTGTCTCTGCAGGACTCTAATGTTCTGGTGCAGAGGAACATGTTGGAGATCCTGCTATACTTCTTCTCCTTGGCCACCTGCCTGGATCCAACAGAAGGCAGTATTCCTATGACCAGGGAGGACACGATCACAGTGGTGTCTGCTGCTTCCCTCACGCTGCTCCGCAGAGACATGTCCCTCAACAGACGCCTCTACGCCTGGCTGCTAGGCACAGACATTAAGGGAGGTATGATTGCTGCAGACCCTGACCTCTCCATCTCCATGGAGGAACACACAGCCTTCTACTTCAAGACCCACTCCAGAGAACTCCTAGTGCAGGCTTTGATCAACATCCTGAATCAGAAAGATGTGGAGGCAGACCCGGAGAGCGTGATTGGTTATCTCCGACCCTTCCGCATCATCATCAGCCTAATGGATAAGCCAGAGATAGGTCTTCTGGTGGTGGACAGTGTGTTATTGGAGGCAGTGAGAGCGTTCTACAGCTACTGCAGAGAGATGCTGGGAGAGGAGTCTATCACCAGCACTGGCCTGACGGGTAAACAACTAACCAGTAAAATAAAAGAAAACAAGAATGCGTCAGAGATCATAAAGACAGTGAACATGCTGGTGAGCTCCATGAACAGTGATTTCCTGTGGGATTACATGACCTGCCACTTCTGCACTTGCCTCAGtGGCCTAGCTGACCTGCCGCTACCCACTCTGCAGTATCAGAGtgcctctcctgctccctctgtcACAGAGATCTCCACCCTCATCATATTTCTAATGGATGTTATCCCTctgGAGCTCCATGCTGACATCCAGTCTCAGTTCCTGCCCCAGATGTTGTGTCGCATGCTGCACACGCTCTGCACCCACATGAATACCCTGGACTTATTGGAGCTCACGCAAGGCCTGGACGCCTGCTTCAAGGTGCTCAGTAAGATCCAGATGCCCGTGGCTTATATGGACATGGAGGAGTCACAGACACAGGAAGTGGAGGCACAGGAGGAGAGCTTTGAATATGTTCAgTACAATGACAAGGAAAGTGATGAGGAGGATAATGATGAAGACGCTGGTAAGGTTAATGGTAACCATGACAACACAGAACCAGAGGAAGAACCTAAACTGAATGGGGTTATGGAGCACGAGATTGGTCCAGGAGAGGGAGAAAGCCCCTTCCTGCCCCTTCGGTCTGAAGACAGTGGATTGGGCATCAGCGCCTCGCCGTCAGAGCTGCACCTCCTACCAGGGGCGGGCCTGGGCCCTGAGGAGGCAGGGATTGTGAAAGAGAGCGAGGGTGTGTGGAGGAAGGGGGGCAGTGTGGAGACCATAACCCAGTATCTGCAGGATATCCTGGCCTTCATCatcagcaggTACCTGCTCGTTCAGGTGGAGGATGTCAGGGGGCAGGAGGAGGCTGTACAATCCGACCCCGCTGCCCTCTCCCCTGGTCGGAAGTCCTCGTTCCGGGAGGGCCCTCAGATCACCACCACCCAGATCAAAGACAAGCTAGCCGAGCTCTTCACCCCCAACAAACACAAACCACGTGCCACCTCAGACCCCCCTGTCCCAGACCCCCctacagagaggaagaaggggcGAAGGTGTGCGGGAGGAGGGGTGGACTGGGGGGCAGGGTACATGCCCCGGAGCAGAGCGGAGATTTCGGAGGAGTGTCGACAGGCGTTCACGGCAGCGTGCCACCTTCTGTTGGAGTCTACCACCTTCCCCCTGTACCTGAGTGAGGGGGAGAGCCATGGGCTCTATAATGACATGTTCAACCATACAGGCAGTGACGTAGACAGCCTGCCTgtgtggctgaggtccttgatgactCTGTGTTGCCTGTCGAGGGACTACCACGTGCAGCACACGGCCATGTCGTCTCTGCTGGAGCTCATCAACCACTCACGGTCCCTGGCCCTGGTCATTCAGGACAAGACCAGGCGCTACCAGGCCAGCGACGCTAACCCTCTCAGTGGGCGGCTGCAGATGGTCACTATGCCCCCCATCTACCCAGGTCTGCTAAGCACCATCGAGCAGGGCACAGACTTCTACCAGCGGGTGGCCCAGGTGCTGTGGTGTCAGCTGGACATGGAGCGTCGAGAGCAGCACACCTCCTGTGTAGAGCTCTTCTATCGGCTCCACTGCCTGGCCCCCTCCGCATCCATCTGTGAGGACATCATCTGCCAGGCTTTATTGCACAGAGACAAGGCTGTACGGTTGGAGGCCCTACACAGGTTCTCAGTGCTGTGGCACCTGACCAGGGACATCCAGTCAAACCGGACCATGTCTATGAACCGCTCATTTGACCGgtctctgtgtgtggtggtggACTGTCTGAACAGCCCAGATGGTTCTGTGAGTgctgcagcccagtgctggctggTCAGGGCTCTCTCCATGCAGGACGTGGTCCGCATCCTGGAGCctgttctgctgctgctgctccacccctccacccagcGCTGCACCATCCAGAGTGTCAAACAGAACCTCACcgcaggtATTCTGAAAGATTTAAAGAGCAGAATTCAAAGCACTACCAACGGTTACGCGAACGCCATAACAACCAGCACCCAAACAGATGAAGGTACACTGGGTCACATGATCCTGGTGGACCGGGAGGCCCTGTGGGGGGAGCTAGAACATGACCCGGAGACAACCCAACCGCCGGCCGACTCCACGGGGGTGTCTCGCAGCGATAGCGAAGCTACAGAGGAAGAAGACGAAccggaggaagtggaggaggaggagagtgtacACACCGAGTCGAGCGGCGTCCAGGTCTCCACTGAGAACTCTAGCTCTGGCTCCGCCCCTTACGGTAGTAGTGTAGAAGAAGGAAGCATGGTCAACGGCCTGAGGAGGATGGAATCGGAACACACGCAGGCATCCGATTCGCTGtcgagcgaggaggaggaggacttgGAGCTTGAAGCCATGGCTCGGTCACGTCTCCTCAAACAGGAGCGTGAGAAGCGGGAAGCCATCGACTCTATGTTCCGCCATGTTCTGCTGTACTCTGTGGCCGGCGGCTGGCCCCGTCTGCTCCACGGCCTGGCCCTGCTGGACAGCCTGTTGAGGAGCAGTGCCCAGCAGCCTCTAGTGAAtgccctctcctccacctccctggACACCAGCTCAGCTGCACACCTCAATCTGGTCTCCAACCTGCTCCAGCGCCACCAGCAGGCCCAGGACGGAAGAGGCTTCTACGGACGCCTACTCTCgccctccagtcccctctccctgctcatCGAGCTGATGGTGTCCCTGTGCCTGAAGTTCCTGCGCTCCCACTACCCATCCTACCTCACTCTGGACCCCAGGGAGCTGCAGGGGAACAGGGAGGTCCAGGTGAAGAGCGTGGGGGTGCTGACCCGCCTGGTGACCCAGCTGGGGATCGTGGCGCGGGGCCAGGGAGACACCTCCACGCAGGGGGAGGCTGGCGTCAGCCCAGAGCCCATCTGTAAGCTGCTGGCCAGGTGTAAGGTGCAGCAGTAcgccctcctcaccctctcagCCTCCATGTACATTAGCCAGAGAGGAACGGAGAAGGGCTCTGCCATGGGGGGTGTAGATCTGTTAGATGAACAGGTGGGTCTGTCTGAGGAGAGCCTGGTGAatctgggagggggagggggacaaGAGCAGTACCCCTTACAGATGGAGCTGCTCAAGCTCCTACAGGCCCTCATCGTCCTGGAGTACCACGTGTGGCCAGGGGAGTCTGGTTCGACCCTGCACTCCGATGAGCCCCGTGACTCCCCTGCCTCCTCAGCACTAGCACGGGAATGGCAGACAGCGGTTCTGTTCCAACAGTCCATCAAGGCAGCTCAGTACGTCCAAACCCAGCCCATCACAGCCCAGGGGATTTTGTCTGCTGCAGCCCGGGCTTTGCAGCCGCAGTACGGCTATGCCATGCACCCCCACTGGGTGGCGCTGCTTTGCTCGTCTCTGCCCTACCTGGGGCGCTCGCTGGGCATCATCGTGGCTCCTCTCATCACTCAGATGTGCAGGAACCTGGACGAGCTGGTCAAACAGTACGATCACGACGGGGGGAAGGCTACACAGAGTCTGATTGGCAGGAAGGAGAACATCGCTCCTGATTATCCTCTCACCCTACTGGAGGGACTGACCACACTCACTCACCACTGTCTACTGGACAACAAGAAGTCCCTGGTGGCTTGTGACCCTGCAGACGTCCGGAACGCCCGCAACGCTGTGATTGAGGAGCTGCCGCACATGCTCAGTAGCATGGCTCTGCTGTGGGGTGTGGTCAAGAGGGAGGAGTCCCAGAGTAGGGGCTCGGACTATTCCCAGACCGCCAGACACACCTCTACTTCTGTCTACTTCAGGAGCTCCaagaccctGAGACAGCGTGTGTTGGAGTTCCTGACTCCTCTGACGGGGCAGTACGGGGTGCAGCTAATGGCCTCAGTGGGAGCTGTGTGGAGCAGccggaggaacaggaggagacacACCAAAAACAAAATCTTACCTGTGGCCAGTGAGTCTCGTCTGACCATCGTGGATCTGGTGAAGTCCCTGGGCACTCTCAGTACAGAACATATCCTGCAAATGGTCAAAGAGGTGGTGAAAAAACCCCACCAGATCAAACGAGACCAGAAGTCCACCCTGGTAGACATCCCCATGCTACAGTTCAGCTATGCCTACATTCAGAGTATTCCGGCACAGGCGCTCCAGGAGAACATGGCGCCCCTCCTCACTCTTCTCAGAGAGTCTGTGCAGCTCAACCTGGCCCCGCCCGGACACTTCCTGCTGCTGGGAATCCTCAATGACTTTGTAAACCGGCTCCCCAACCTAGACAATAAGAAGTACACTAGGGATATGCAGGAGGTGACCCAGAAGATCCTAGAGGCTGTGGGCGGGGTGGCGGGGTCGTCTCTGGAGCAGACCAGCTGGCTCAGCCGTAACCTGGAGGTCAAGAACCAGCCTcaggtgtgtcctgagacagaggaGCCATCCGACGAGCTGGACCTGGACCTCTATGACTCTGAGGCTCAGGCCAGCACCATGGTCTCTTCCTCAGCCCCTTCTGTGTACAGTGTGCAAGCCCTAGTGCTATTGGCAGAGGTTCTAGCCCCTCTCCTGGACATGGTGTATCGCAGTGATGAGAAGGAGAAAGCCGTCCCTCTCATCTCTCGCCTCATGTACTACGTCTTCCCCTACCTGAAGAACCACAGTGCCTACAACATGCCCAGTTTTGGTGCAGGTGCCCAGCTTCTGAGCAATCTGAGTGGGTACGCCTACACCAAGAGGGCCTGGAGGAAAGAGGCCTTCGAACTCTACATGGACCCCCTCTTCTTCACCATGGACGTCTCCTGCACCCCCCACTGGAGGTCTATCATCGACCACCTGCTGACCCATGAGAAGACCATGTTCAAAGACCTCATGAGCATGCAGAGCAGTTCTCTGAAGCTGTTTCCCAGTGTAGAGCAGAAGCCCATGTTACTGAAGCGTCAGGCCTTTGCTATGTTCAGTGGAGAGTTAGACCAGTACCACCTCTACCTGCCCCTCATCCAAGAGCGGCTGACAGAGGCTCTGCGTATGGGTCAGACGCCCTCCGTCTCTGCTCAGATGTTTCTGACATTCCGTGTTCTTGTGCTGCGGATCTCCCCCCAGCACCTCACCTCCCTCTGGCCAATCATGGTCACAGAACTGATCCGAATATTTGTTCGGCTGGAAAAAGCCTTGTTGGAAGAAAAAGAGGTGTCAAAGTTGACTAAAGTTGTACGTGGGGCCATGGGGAATGGGCCATTGGCTTTCCCCCAGCCAGAGTTGGACATGTACCTGTCtgcctgcaagttcctggacaccGCCCTGGCCTTCCCCACAGAGAAGATGCCCCTCTTTCAGATgTATCGCTGGGCCTTTGTTCCAGAAGTGGATATGAGCTGCTACAGTGGCCCAGAGAATAGTATCCTGGAGGGAGAGCAGGAGTGCAAACCCCATATTGTCAAAGTACTAGAGGCACTACACCAACGCTACGGAATGCTGAACGGGCTGAGCGAGGAGTCCTCTACGGAGCATCTGGAGTTCCCCCTCCTCACCCGTCGCTTTCTCACCTCCATCACCCAGCTTGCTCCCTTCCTCCATACACTCTGCTGTTCCTTCCAGGGCACTTCACCCAGCAGCCCTCCAGATTACCCTGTGACAGACTACCCTCTAGCCAACGCTGACCAAGTCCTGAAGAGACTGGAGCACATCACTGAGGAAGAGTTCCTAGACTCCATGGAGAGTTAGTACTCCACCAAGGATCTAGATCTTAGAACGTAGAGGAAATGAGAACTAGAACCATAGAAATTGAATGTGTAGAATGGGCACAACCACTGAAAGCGATGTTGTATTGTAGGCATATGCCAGCTAAATGGTCATCTTTTGGGATGTTCTTTTGAATTTTGAATTGTTTACCTTACTTGGTTGAGATTTAACACGTCTATATAGGATATTCTACATTTTGAGATACTCTAAAATAATCTAGAATTAACTGACACAAACTGGAATGgcagttggggcggcaggtagcctagtggttagagcgttggacttgtaaccgaaaggttgcgagatcgaatcaccgagctgacgaggtaaaaatctgtcgctctgccactaaacaaggcagttaacccactgtgcctaggccgtcattgaaaataagaatgtgttcttaactgtcttgtctagttaaaaatacattttgaaaattaGGCTCTCTCTGAGTACAAGTCTGAATGTGCTGACTTAAAATAAGAGTAGTACTGATACTAGCTAGCTTTTTGAGGTGACACTGGTCATAAAAGAAGCACCACTGTAACCAAAGAGTGGGACAGCAGTACTGACTACTAATTGCTCTGCAAAGCTGCTCCCTACTATTAGCATATGTTGTAATATATTCCAATGAGACAGGAGTAGATGAGTATACCTGCTGGTCAGTGACTATGGGACCTCTAAGGCTTTTAATAGAGGATGGTTgatttttttatgtttaaaaaGCTCTGCTTGTCATCAATCATGTCACAGTTTTTTATTTGTGGGTAAATTCTTTAATGTGATTTGTGTGCACAGTAATACCTCTAGATATCTAATAAGTTAAATAATGTGTGGTATCTGTTCATGGGGAGTCTCTATTTTTAGGTGTTTTGTGGAATGTTTGGACATATGGTGCTTTCAAAGCAAATCAGAATCTCTGAAATTTGACTTGGAAACTAGTTGTAGAATGATGAGGCCCAAGTTTCTAGAGTCAACCAATAGGAAGCTCTATGCAAACAAATGTAAATTAACTCAGAGGTTCAGTTTACCACTTGTCATGAATACACCATTACCACTCAACACAATTTTATTCTTCAAATGTGAATGCTTAACTAAACTATGTAAATGTTTGACCTCCTGAAAATGATTACTTGTTAATATCCAAATTAATATATCATGGTCtgcaaataaaaacatttaaaaatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052525 lncRNA downstream 30781 25811335 ~ 25813715 (-) True G1793356
TU2052531 lncRNA downstream 36693 25806417 ~ 25807803 (-) True G1793361
TU2052550 lncRNA downstream 103463 25740701 ~ 25741033 (-) True G1793380
TU2052547 lncRNA downstream 106708 25737529 ~ 25737788 (-) True G1793377
TU2052546 lncRNA downstream 107149 25737053 ~ 25737347 (-) True G1793376
TU2052608 lncRNA upstream 28105 25919270 ~ 25919512 (-) True G1793433
TU2052786 lncRNA upstream 229420 26120585 ~ 26120802 (-) True G1793593
TU2052787 lncRNA upstream 230213 26121378 ~ 26121658 (-) True G1793594
TU2052919 lncRNA upstream 233103 26124268 ~ 26126786 (-) True LOC110501642
TU2052921 lncRNA upstream 238366 26129531 ~ 26129770 (-) True G1793720
XM_036959588.1 mRNA downstream 1529 25814821 ~ 25842967 (-) True LOC110501632
XM_021579329.2 mRNA downstream 44704 25791818 ~ 25799792 (-) True LOC110501631
XM_036958991.1 mRNA downstream 44730 25791818 ~ 25799766 (-) False LOC110501631
XM_036958988.1 mRNA downstream 55195 25769933 ~ 25789301 (-) False LOC110501630
XM_021579335.2 mRNA upstream 6595 25897760 ~ 25904394 (-) True LOC110501636
XM_021579339.2 mRNA upstream 53968 25945133 ~ 26001223 (-) False LOC110501638
XM_021579338.2 mRNA upstream 53968 25945133 ~ 26001224 (-) True LOC110501638
XM_021579340.2 mRNA upstream 119776 26010941 ~ 26013975 (-) True LOC110501639
XM_021579344.2 mRNA upstream 232605 26123770 ~ 26224796 (-) False LOC110501642
TU2052534 other downstream 132877 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 858228 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 986611 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 994744 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1517369 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1377497 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1850207 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1850207 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2089499 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 2118490 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile