RNA id: XM_021579340.2


Basic Information

Item Value
RNA id XM_021579340.2
length 2060
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110501639
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26010941 ~ 26013975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCCTCATGCTGCAGTCACTCCCCGCGAGGCTTTATTATGGGTTCGGCTCTTCTTATCTCTCACACAATCTGGCACGCACAAGAGAGTCAGCACGCGCGAAGGTGAGACACGAGCAGGCGGAAGGATTCCCTGTAATCGTTCCCCTCACAGAAGAATGGTCCCTGGCATGCAGTTTACTAAAGCCCATCATAATATCACGGAAAAACAAGGCGGACTAAAGGAGTCACTCTCTCCACGAGCGCACCCTCTCCTCACAACAACCTCATTTGTTTTCTTCAGCGGAGGTCAAGAGACAACACTTAAGAAAATCTGTCCTCAAACAATCAAGTGATGCTCAAATGAAAAAAACGAAAGTACGACAACAGAAACACCTGTCGTCCGCTTATAATTAGTTAATGGACACGTAAAATCGTTTTGAATAGACTAACATCTAATTTGAAGTTGGTCTCACCTATAAtcaaatacatgttgatgagaaggGTTGGAGATGTGTGACCGTGGGTGACACCAACGAGAGTTTTTACAGTGGAAATAACTCCTCAGGGGTGCACCCTTGGATAAAGTTGAGCAAATTAAAATTGGGGTTGAACCTTTGATCTGAAAACAGACCACAAAACAGACGGCCTGAAGATGATGCTGAGTCCTGACCAGCCAGACGTTGACCTGCCCTGGGGGCAGCCCGACACAGAGACCCTGCTGAACAGCATCAAGATGGAGTGCGCCCCCCTGCCCGCGGAGCCCGCAGAGGGCGAAGGCAAGGCGCGCTCTCTGTCCATTCCTTCCCTCagcagggaggagaagaggaggcggaggcgCGCTACAGCCAAGTACCGGTCCGCGCACGCAACAAGAGAGCGCATTCGCGTCGAGGCTTTCAACGTTGGGTTCGCCGAGTTGAGGAAGCTTCTCCCGACACTTCCGCCAGACAAGAAGCTGTCCAAGATTGAGATCCTCCGGCTCGCAATCTGCTACATCACCTACCTCAACCATGTGCTGGATGTGTAGGTCATCAGTCAAGGATGGACACCGTCagtgaaggagagaagaagactgAAGATGGAGACTGGGTAGGGTGGACTGCATACGAATGCTTGATAGACATTGTTGACACATATCTGGCCTGGGAGCACTGCTGTGCCTGTAGTGTGTGCCCAAGTGCCCTGTGTGCTGCCACTCTAGGCCAGAGTCACACAGTAAAACAGGACCTaatgtccttctctttctcagtgTTGTGAAGGAAAGAAACTGCTGCCCCACTGGACTTACCCACAGACTTACCCAATTGAATCCAAATTTGCAGTGTCAGAAAACGCAATAATGTCGGGTGATCCTACTTCTTATAGGTTTATTAGCCTAGTATTGAAAAGCTGTCCTGTTAGCCAATACTTACCATGGCGAAACTTCTCTCCGGACAGGGCTGATTTAAAGGATCTGTAGCTGTAGAGATTCGCTGAAATCAGTGATGAAGTTCAAAGTAGAATATAAGTGCCACTTATTTACAGATATGATATGTTGTATATTATATTCgttatttgtttttgtattaGGCTTAGTAAGTTACGTATTTATCAATTCATGTTTACATTGTAATGTCTTATGTCTGGTGTTTGCACATACatatttatttgtaatatatATAACAATTATTTATACTCTGACAACAGAACAAATACTGTTGCTCTTTATTGCACTTTTTAATCGGATTTTATCTATTAAAGATTTCCCAAAATGTTTTTGAAATCCCTGTTAAATCCAGAGGTTGCAAGTGAGATTGCAGTGTTTTGTTTGGTAGGGTGAGACACAGTTTCAGCTTTAGGCCTACAATTTCATTATTAGCTTTTTCGATTGTCCAGAAGTTTGTTGGTTTCATGTTCAGCTTTTAAGGACAATAACATTTTTTTTCTGTGACAAACTCCATAGTTTACTTTAGCCAATACGTGCTTTCCAAAGATTGCTTAACATTTCAGGGTGTCCTTTTGTAGTATGCCATATATAACACACCTAAACAGCTTTTgttaataaattaataaattgttaatacatttttttatcttAAA

Function

GO: NA

KEGG:

id description
K09075 NHLH, HEN, NSCL; nescient helix-loop-helix protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052608 lncRNA downstream 91429 25919270 ~ 25919512 (-) True G1793433
TU2052525 lncRNA downstream 197226 25811335 ~ 25813715 (-) True G1793356
TU2052531 lncRNA downstream 203138 25806417 ~ 25807803 (-) True G1793361
TU2052550 lncRNA downstream 269908 25740701 ~ 25741033 (-) True G1793380
TU2052547 lncRNA downstream 273153 25737529 ~ 25737788 (-) True G1793377
TU2052786 lncRNA upstream 106610 26120585 ~ 26120802 (-) True G1793593
TU2052787 lncRNA upstream 107403 26121378 ~ 26121658 (-) True G1793594
TU2052919 lncRNA upstream 110293 26124268 ~ 26126786 (-) True LOC110501642
TU2052921 lncRNA upstream 115556 26129531 ~ 26129770 (-) True G1793720
TU2052922 lncRNA upstream 115964 26129939 ~ 26130197 (-) True G1793721
XM_021579338.2 mRNA downstream 9717 25945133 ~ 26001224 (-) True LOC110501638
XM_021579339.2 mRNA downstream 9718 25945133 ~ 26001223 (-) False LOC110501638
XM_021579335.2 mRNA downstream 106547 25897760 ~ 25904394 (-) True LOC110501636
XM_021579331.2 mRNA downstream 119776 25844496 ~ 25891165 (-) True LOC110501633
XM_036959588.1 mRNA downstream 167974 25814821 ~ 25842967 (-) True LOC110501632
XM_021579344.2 mRNA upstream 109795 26123770 ~ 26224796 (-) False LOC110501642
XM_021579343.2 mRNA upstream 109795 26123770 ~ 26224797 (-) False LOC110501642
LOC110502076 mRNA upstream 280485 26294460 ~ 26299908 (-) True LOC110502076
XM_021579346.2 mRNA upstream 303260 26317235 ~ 26321085 (-) True LOC110501645
XM_021579348.2 mRNA upstream 374442 26388417 ~ 26447220 (-) True LOC110501646
TU2052534 other downstream 299322 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1024673 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1153056 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1161189 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1683814 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1254687 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1727397 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1727397 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1966689 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1995680 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile