RNA id: XM_021579343.2


Basic Information

Item Value
RNA id XM_021579343.2
length 7708
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110501642
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26123770 ~ 26224797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATGCTAGTTAGTTTTTCAAATGGCAGGGAATACGAGATTACAGCGTTGAAAGGGAATTTCTTCCAACCAGGAAATGACATACAAGGAATACACCTAgggaatagtaaaaaaaatattgattttaAACTGAATTTGCAGAAGAAGGACTTGACTCGAAGCCGTTGAAGAACAGCAACTGAACCTTTTGACTAAGTTATTGATCAGAAACACATCTGAAATGTGAGGTTATTCTCGCGGTGTGggtttatcaatatatttgtgCCCGAACAACGCTTTGTGTAGGCTATGAACAACATTCAATTATCTGATCAACGATAAAAGACGTTTCGGATACTTTTATAAacaattcaaataaaaaaaaataggctACTGTGGTTAATTTGCGGTGGGTTCGGTCCATTGACGAATTCGCTCGGAAGTCCATCCTATGGCAcgttaatattatattatgttctgCCGCTAGAGCGCCCGCCCATCGACTCcgattgtttttttgttgttgtagcgaAGCAGTGAAAGGAGATTGATTTTACTGAACGCGTGCGTTTGGATAGCGCTATCTCCCCGGAGGAAGAGGACGCCCACTGAAATTAAGTATTTTATGTACATTCTCAACAGAAGGACTTTACGTATTTATTTTACATATTGATCCGAAAAAATCTTGATATTGGCAAAATTCTAAATAGCGCACTAACAAAGCAAGACATCTACACACGCTGGACTGTCCCTGCTGAGGTGGTTTGTCATTCTACAACGAAGGGCCGCCGCAGTCTCTCTGTCCGATGCGTAGGAAAGGAAGAGGGGTCAGGATAAGCGTCTTTTATGGGTGCATATCGTCATTGACGAAGGTGATACAGAGAAACGACACCCGAGTCTACCAAGCCCCGCATTTCAGAGCAGGATACGGCAGATAGTTGAGGGTATCCCACAGGCAGTAGGCGACTTCGCTATAGCGGATCTCAGTCTCAAGTCAACCCATCAGGTTCGATCCCCGGTGGGCACCAGACCTACCCGTCCGTCGCCCGCACAGGTGGTCTGCCATAGATCCCACCATTTCTGCCTCAAAACAGACCGAAGTTTTGCCTCGCCAAACGGATTATAGGAACGGTgtctgaggggagagaaagacggAAGACAATGGGCATCCGCACACTCCTTACTGCGTGTGCGCTGCTTGCAGGTGTGAGCGTGGCACAGAGGGTAGTGACCGTTCAGAGCGGACCGCTGGTACGGACGGAGGGCAGTCACGTGACCATCTGGTGCAACGTGACTGGCTACAAGGAGGGTGTGGAGCAGGACTTTGAGTGGTCCATGTACCTGACCTCGGTGCCCGACCGCGAGATCCGCATCGTGAGCACGGCCCAGTCCAACTATGCGTACGCGGTGTACGCCCAGAGGGTCAACAGTAAGGAGATCTGGGTCGAGAGGCTGACCAGGGACTCAGCCCTGCTCCACATCACCAAGGTCCAGGCCAGAGACCAGGGGCTGTTTGAGTGTTACACCCCCAACACAGACGGACAGTACCTCGGCTCCTACAGCGCCCGCACCAACCTCACCGtCATCCCCGACTCCCTCACCGTCGCCGCGCCGCCACAGACCCTCTCCCAGGTGGAGGGAGACACGCTCCAGCTCAGCTGTGAGGTTTCCCGGGCGACGGAGCAGCACACCCACCTGTCTGTGGGTTGGTACCTGCGCTCCCCGGAAGACGCTGTCGCCCCACCCCTGGAGATCCTCACTCTGTCCCGGGACTTTGTCCTCCATGCCGGCGGGCCATACAAACAGAGGATGACCTCAGGAGACCTGAGACTGGATAAGACCAGCGCTACGTCCTACAGGCTGACCATCCACCGGCTGCAGCCTGCTGACCAGGGCCTGCTCTACTGCCAGGCTGCAGAGTGGATCCAGGACCCCGACCGCAGCTGGTTCGCCATGACCCGCAAGCAGGCCGACAAGACCCAGCTACGTATACAGCCCACTGatcGGGACTTCTCTATCCAGGTGAGCACGGAGCGGCGGTCCTTCACGGCGGGCGAGCCGCTGGAGCTACGCTGCACCATCGATGCCCAGAGCGTGCCCGAGCGCTTCTTCTCGGTGTCGTGGGTGTTCAGCAGCTCGTCGGTTGCCGTGATAGGGCCCAGCGCTGTGCCCGTCCTGGGACCCGACTATGTGGCGCGCGAGGCCGCCGGTCACATGACCGTGCGTAAGGAGAGCCCCGCCGTGCACCTGCTAAAGTTGCAGCGCCTCCGACCAGAGGATGCTGGGAAATACATCTGTAGAGTCACGGAGAGGGAGAAGACACCCACTGGGGACTTTATAGACCGGAGCAAGAGGTCACGCAACGTCCAGATCACCGTCCAGCCCATCAagAGTAACGTCACCGTGTCTTTGTCCAGTAACTCGTCAGAGGTCCAGGAGGGGGATGTGGTCCAGCTGACCTGCTCCATCCACTCCACCACAGGTCCTCTCTCTGTGGCCTGGCAGTGGAGTGAGAAGCAGGGCTCCACCTCTCCGCAGGACCTGGTCTCCGTAGACCGCGACGGGACCGTCCGACCAGGCCCTGGGTACCGTGAGCGTTCCAGCTACGGGGAGATCCGGGTAGAGAGGGTACGGGAGGACATCTATACCCTGTCCCTATACAACGCCCTGCCTGGGGACGAGGGGCTGTACCGGTGCACGGCCACAGAGTGGGTGGAAGCCGGGACTGAGCCAGAGCAGAGCTGGGAGATAATAGGAGAGAAATCAGCCACCAAGACCATCACTGTTAAGAccgtggAATCCTCCTTCGTGGTGTCAGCGTCGTCACGGACGCCTAGCGTGACCTTTGGCGACTCGTTTGATCTCCAGTGCCTGGTCAAGCCCCGTCATAACCCTCGTGTGCCCGCCTCCGTCACCTGGCGCTTCATGCCCTCCAGCTCGGGTTCTGCCAGCGAGGGTGGTGAGGGTGGCACAGTGGGCGAGTTCCGAGACCTGGTGACGTTTACCCGTGAGGGCACGCTGCAGTGGGGCGAGCAGCTGCTGGGCCAGGGCACCCGCACCACCGTGGACCGTTCCCATGCCAACACCAACTTCAGGTTGTCTGTGACGCGTGCTGGGCGTAGGGAGGCGGGGACATATCAGTGCTCTGCCCTCCTCTGGAGGAGGAACTACGACAACACCTGGAGCAAAGTGGCCAACAGGACGTCCAACCTGCTGGGGATCAGCGTGTTACAGCCAGtgAGTAAGCTGCGGGTGCAGAAGACCAACCAGTCCCTGGTCTACCTGGAAGATAGTCGCGTGCGTGTCAACTGCTCCGTGGCGTCCCAGACCAGCCAAGACTCCCAGCATGCCGTGCTCTGGTATGTGCGCCGTGCGGCAGGTGCTGAGGCCGATGAACTACTGCTGAGGATTGAGCGCTCGGGCGCGTTTGAATATGGCGCGTATGCAGACGAGGAGAGGTTGAGGCGACGAGTGCAGGCTGAGAGGCTGTCGCCACGGCTCTACGCGCTGACACTGAACAGGGCAGAGAGCAGCGACTCTGGGACGTACTACTGCCTGGTGGAGGAGTGGCTCACAGACCCAGACGGAGCCTGGTACAGACTGGCACGGGACTCCTCAGGATTCACACAGGTCCTAgtcagacaaccagAGGTGCGGTTGCAGGTGGAGGAGTCGGAATCTAACATCACTGTGTCCCAGTCTGGTTCCATCCGGTTGGGCTGCAGCATCCCTTCCCAGTCCTCCCGAGACTCCCGCTTCTCCGTGTCCTGGTACGTGGAGCGCCccgaggaggaagatgaggaagaggaagaccagTTGTGTGTGTTCTCCATTGGACACGATGCCGTGTTCGGGAACGGGAACTGTAGCCCCACCGAGGAGGCGGGGCCTAACTCACGTCTGCAGTTTGAGAGGACaacctctgacctctacagtCTCACCATCCAGGGAGCACGGCCCGCTGACACGGGGCGCTACTACTGTCACGTGGAGGAGTGGCTGCTCAACCCCCGCAACGCCTGGTATCGCCTGGCGACCAACAACTCCGGTGTTACCATCGTCACCGTGATCCAGCAGGTCTCCACACTGCAGTCGGTGGTGTGCTCCAATGACTCTCTCTTTTACTTTATCTTCTTCTACCCGTTCCCCATCTTCGGCATCCTCCTCATTGCCGTGCTCCTGGTGCGCTATAAGAGCCGTAGCCACAGCAAGTCCCAGGAGGGCAAGAACGGCGCCCCCTTACTGTGGATCAAAGAACCCCACCTCAGCTACTCGCCCACCTGCCTGGACCCACCCGCCCTCAGCCTGCACCCTGGCTCAGTGGAGTAAGGAAACAACTCATAACCCTCCTCCACCCCGTACTCATCGAGGATCCAACCAATACCACGCCAGGGAGGGTCTACTTCGGACCTCCACCTGACCAACCACTGCTGTGTCCAAGCTGTCAGTCAATCTGTTCGTCCATGTATAACCCCGCCCCCCCGTGGTTGCCCCGGCTGtgctggctgcctgtctgtgaGATACTCTGCAGCAgccctgtcgtgtgtgtgtgtctgtggaaaAGTGTGTTTGCGCCAAGTGTgcagccgtgtgtgtgtttggaagtGTGAGTATAtgtatctctcgctctcctcttcgTCCAGTGAAAAACATAGCTAtagttatttttctttttttaaattctgtTTTTCAAAAGATGTCTGCTAGAATGATACAATCTGGGAACAAGAAAATGACTAGTCAAGGACCCTATATGGgcatactgttctgtactgaactGAGGACGTAGTGAGGATGATAAGGAATCTCTCTCTGTGCTCGTTTGACTTAGCACTGAACTCAGATCAGTCCCTGCCTGGCCTTATACCTTGGTTACCATAGCGAGGGCCCTTTTCAAACTGACTCCAGCGCTGTGGACTAGActcccacagaaacacacaaagaCAATTAGAAGAGATGTGTGCGTGAcaatgtgaaagtgtgtgtgttcacccACCTGTCTCCTCAGTGTGTTTGCCttggcagacagagacagacctagCGAGCCCATTGTACATTGCCACACACTAGGCATCGGTGTGAATGCacacctcttctcctcctctccaaacaGAGTGAgaacgagggaaagagagaaggaatgagGATAAATGAACATATTTTTGACATGAGGGATATTTCAGTGCCAAGAACTTATTCCAGGCTGTCCTCTGCAACAAATGTTTGAAGTTTAAAGGGGCGAGCAAAGCCGATTGGTTCCGAGGCACTCTGTAAATATGGCTGCCGACCCCATGCTGGGGGATTATAGGCCTTGTAGGCAGAAAGGGCGATTTTTACGCTTATGTTAAACCCGTTGAGTAGTTTCTGCATAAATGTATTGACACAGTGGGATTTATTGACTGAAATGAAATTCTCTGCCATTTCATACGCTGTCTGCTATTACTACCACATGCTGTCTTTAATAGACATGAATTAATGGGTACAAGCTGTGCAGCTCTTAGAAATTCCTGTAGAGGGGAGCTGAGCCACAAGACATATCATCACTAGAGATGTGTGTAGAGGTTAAGAACATGcatattaaaacacacacacacacgcacacacacacaaccagctcTTTGGACAACGTGTAGAGAAAACAAAAGCATCCCCAAAAACGGATTACCAACACACCATGGGAATTAATATCATGtctgatttgatttggatttttttgtaccttcatttatatatttttgttattttatacTGTTTTGCATAGTTCATGTACATGTCTTTTTAGATTTCTCCAAGTACTGCTCTTCTACTTGTGTTGCCAGGCAACcaaaacacacagatacaaagTCATGATAACACTGCGTCCATAGTCACAGGCACTGAAATGTCGTAGATATAGAAATGCTAGATTAATTTGTTCTGCGCAGTCAGTGGCATcacattgaagatttatgttttGGCCAGTGTGGAAACACTAACTAAATGCTCTATACCTGTATTGGAAACCTAGCAGCTTCACTATAGGATGTACAGTAGATTAACAGCGAGAGTCACAAAATTAACCACTTTAAGCTTTTGCTCGTCTTGTTTATTTATTGAAATGTACCGTGACACCTAGTTAGGATGTGTGAGCTTCATAGAAATGCATTAGACTGCCATAGATGACTGGACCGAAGCCGGCCTCTCGTGGACTGTGGATGTTTCCCCCTTACCTACAGTACACTTGGCAGAAGGGTTGGGAATCAGTCACATTCCCATAGTATGGAATGGCCGAGAGAGGAAATGTGACATTCCTGTTCCGTAAAATAACCCTTTCACTGCCAGACTGCTGAAAGCTCTCGTCATTCTCTTCTCAATCGTGTCGAAATGTATATTGCATGACAATATTGCAGGAAGCGTTTTGATGTTTTGTAACCTTCAAACTTTTTAGCGTCGTGTTTGTGTGACCGAGCGATGCCAAGCCCTTCACTTCCTGTGCCAAGTGTCAGACGGATCTACAGAATAGGAAGTCACTTTGAACAACAGATTTATGGGGGAGGGAGAACATCTTTTTGGTTGTTTCTATTCTTTTCCATCTGCCATTCAAATCCTGAGAGAGCGGAAGGCCTCATCACCTGCATTGGTTGACAGCTACAGTTGAAAGAGCAGCTCAAGCCAACTGTGCTCAACCCTGTCACAAACCCAAGACGCTAAGATAAGATCTGGTCCAACATCTGACCAGAGGTGGACCCTCATTTTAAACTTCAACAATTTTTCATTGGTTTTGCCACAATTCAGTGATAAGGAAATCAGCAAATCCCTGAGCAGCGTGCAGGATCTCTGAATCTAAACCAGGAAGTGGAGGGTGCGGCTTTGGTGTGTGTTGTCACAGTGCCACAGTGCGTAATTGGAGCTGTGTTGTACTCTGAACAGTGTTTTTGTAGTAATCAACATCCTTAGACGAAATCCTAAATGCTCTCCAGACGCTCCGACAGTGTTGTAGCTGCGTTCCGAGGGCTGCATGCAGTGACTGTGGCTCCAGATTTAGCTGGAAAATAACTGTGGTGAAGTGTTCAGTTCAGCCAGTGCTGCTTTTTTCCAGTGatgtatttttgttattttttcaaGTCTATGATAGTGCACTGAAATGAAAAGGAAGGCCATAGCTTTTTTTTAGACGCTTATTGTGTTTTTCGTGTATATGACATGTTTTTGTTGATTTTTATTCTGATATATATTCTATTGAATAGTAACCACTGCTATCATTCAAAAGGCACTTTGCTATTCTGTCAGTTTATTGCAATAAAAACATGTTCAGTGCAACATTAGGCGTTGACATTCCTCCTGACCCTTCTACATATTTCCTTCTATGAACCTCCAGACACCTGAGCAATGGAGCAAACGGAACAGCTGTACCCCCACTTTCAGAATAGGGGTACAAACTTGTTTTTGCACCCCCACTTTTTTTAAACCAGAAAATGATCATGAATCATTGTTTAATTTGTCATTTTCAATGATTAGCAATGTTAAGCTAGTTTGTATTAAAACCCACCCATTTTAGATTTGAATGAACAGATTGCATTTTTCACCACCTCTCCCCGTCGCCTCAagatgaatggttttgaccacAAGTTTTGCTTTGCTCCGGTGAGCCACTGTGTTGGTTCAGTGCAGTTAGAAAACATTAGTTGCACTACTGGTGTTTGAAATAAAAAAGGCACCTATTCAAAAGGTGTGATTTTAAGAACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052787 lncRNA downstream 2112 26121378 ~ 26121658 (-) True G1793594
TU2052786 lncRNA downstream 2968 26120585 ~ 26120802 (-) True G1793593
TU2052608 lncRNA downstream 204258 25919270 ~ 25919512 (-) True G1793433
TU2052525 lncRNA downstream 310055 25811335 ~ 25813715 (-) True G1793356
TU2052531 lncRNA downstream 315967 25806417 ~ 25807803 (-) True G1793361
TU2053048 lncRNA upstream 78587 26303384 ~ 26304276 (-) True G1793842
TU2053084 lncRNA upstream 111635 26336432 ~ 26336659 (-) True G1793874
TU2053085 lncRNA upstream 112893 26337690 ~ 26337921 (-) True G1793875
TU2053145 lncRNA upstream 148548 26373345 ~ 26373547 (-) True G1793934
TU2053156 lncRNA upstream 156481 26381278 ~ 26381533 (-) True G1793945
XM_021579340.2 mRNA downstream 109795 26010941 ~ 26013975 (-) True LOC110501639
XM_021579338.2 mRNA downstream 122546 25945133 ~ 26001224 (-) True LOC110501638
XM_021579339.2 mRNA downstream 122547 25945133 ~ 26001223 (-) False LOC110501638
XM_021579335.2 mRNA downstream 219376 25897760 ~ 25904394 (-) True LOC110501636
XM_021579331.2 mRNA downstream 232605 25844496 ~ 25891165 (-) True LOC110501633
LOC110502076 mRNA upstream 69663 26294460 ~ 26299908 (-) True LOC110502076
XM_021579346.2 mRNA upstream 92438 26317235 ~ 26321085 (-) True LOC110501645
XM_021579348.2 mRNA upstream 163620 26388417 ~ 26447220 (-) True LOC110501646
XM_021579352.2 mRNA upstream 274806 26499603 ~ 26516319 (-) True LOC110501648
XM_021579356.2 mRNA upstream 309437 26534234 ~ 26567495 (-) True LOC110501651
TU2052534 other downstream 412151 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1137502 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1265885 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1274018 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1796643 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1043865 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1516575 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1516575 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1755867 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1784858 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile