RNA id: LOC110502076


Basic Information

Item Value
RNA id LOC110502076
length 2577
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110502076
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26294460 ~ 26299908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGTTGCGTCAAGCAGTACCAGTGGAGGACCAGTCTCCTGTTCTTCTTGAGTGGACTCATCCAATGGGGCGGGGCTACGGTGCTTGTGGAGGTGCAGTCTGGCCCTCTGTATCGTGTGATTGGCTACCCTTTCTTCATGTCCTGCAACGTGAGTAGTTTCTCTAACCAGGCAGCCCGGCAGGACTTCAGAATCTCCATCTACAAGCCAAACAGACCCACCTGTGAAATACAGATCATCAGCACAGACGACAACAACTATGCCATGGCGTCCGCGTCAGGGGCGGTGGCATCACTCTGGAGTGCCGGTCAGTGACTTCGGTCCTCTTCCACGTGAAGAGTCTGGAGGAGGGGAACGAGGGCGAGTATGAGTGCCTCACCCCAAACTCAGAGTTAGAATATAACGGGACGTACAATGCTAATGCCACATTGAAGGgtaatATAGTGATCAAGGACACCCTGACCACCTCCTACACTGGCCACGCTTCCTTCAGCCTGTCAGAGGGGGTTGCCCTAACCCTGCAATGCCTCGCTTCCAGCAACACCTTCCAGCACACCCACCTGTCCGTCACCTGGTATCTCCATGGAGACGGGAGGCCTTGCCCCACCCCATCATCTCTCTGGACTGTGATTTGACGGTGAGTCTGGGTCAGGGGTTTGAAGGACGGTACCAGGCAGTGTTCATTGGTCTGGACATGCTGGAGGAGGCCACATACAGGCTGAAGATGGCCAGGATTTAGCTGTCCGATGCAGGGAGGATCTACTGCCATGCCCAGGAGTGGATCCAAGACCCAGACCTGAGCTGGTACCCAATCTCCCATAAAGACGCACAGGCAACCACGTTGCCAGATTGGGCCAACTGGCATCCTGTCTGTGGGGCCGGAGtacggtgggagagagagcgggggcgAGCTGAGAGCTGTGCGGACGGGGGAGAAGACACACCTGCTTACCCTGCGGCCCAGAGGTTTGGCCGTTGCCATGGAGAACCAGAAGGTGAGCGTTGACGAAGGGGACGAGCTACAACTCGCCTGTAGAGTGAGCGGGGTCAAGGGTCAGCTCTCCGTCCCCTGGAAATACAGATCAGCCTCCACGACAATGGGCCCTTCCCGCGAGGGGGGGTCGGCCCCGGACAACATCCTGACACTGTTGCACACCGGTGACATCATGTGGCGCGGTGACCAGAGTAACTACCAGTTGAGGGTGACCACCAGCAAGGGGGAAGTGCATCACATCCTCTGCATCATCAGAGCAAGCCGCGGGGAGGCAGGGTGCTATCAGTGTGTGATCTCAGTGTTCCTGCAAGGGAGACACAGGAATCCGCAGAACTCCAACCTGCTGGCTGTGTTGGTCCAGACTCTAGagGGTGTACTTACCCTGTCCTCTAGCCCCTCCCCTCTGGATCAGACCATCAACGCAGTCATACAGACGGAATGCTCCGTTGTCAAGGCAACTTCTAACTCATCCCGCTTCGCTGTCACCTGGTTGGCCCAGAAGAAGGGGGTGGGGAACCAGACCGTCCTCAGCTCAGACCGCGATGCAGTGATAACACTAGGGGCGGAATTAGGCACAGAACAGCGAATCAGTATGAGAAGACGTGAGAGGTGTAGCTTCGAACTAACCATTCGACAAGCCCGTAGCTGGGACAGGGGGAGGTACTACTGTGTGGTGGAGGAGTGGCTACAGGATCCTCACGGCGTATGGTACAAGCTACTACATGGTACAAGCTCCTCTTCTGCAGCTATGGAACTCCGCCTACAAGAGACGGGTGAATTATtctctctctttctgtctctatgtctctctctcccagtgagTGACCTCAGTGTTAACAAGACAGATCTGGACATGGAGGTCAGAGATGGGAAGCGGGTGGAGCTGACCAGCACTTTGACCTCAGGTGACCCTGCCTCTCTCTACGCACTCACCTGGTTCTACATGAGGCgtggctcctcctcctctcacagggTGACCCTGGTGATTCTAGGCCATGATGGCACCCTGAAATACCCAGATGACAACCAAGGGCTCCAGGCCCAGAAGGGGAGGCTGATCTTCTCCAGGAACACTCATGGTACCTTTCTGCTGGGTCTACAGGGAGCTCGTCAGGATGACAGTGGAGTTTACCAGTGCAATGTGGATCAGTACAAGTACAGTCATGACGGCAACTGGGAATGTAGTGCCTCCAACCAATCAGGCAGAACCAACCTCACTGTATGACGACCAATAGGTATGATGTCATAATTTATGAGTCCATGATGTCGGACTATACAAATACAACTGAATCACAATCTGTTGGTTTTTATCTTaccttcctctgttctctccctctccagaacTTGAGTCTGAGTTGCTGTCTGAATCAGAATTCCCCACTGGATTAGTTATACTCATCTTCATCCCTCTTGTCTGTATCCTGGCAATTGTCATCATGATGCTGTCAATCAAGCTGAAGGGGCGGGGTTCAGCTGGAAACAAGAAACACGCCAACTCTCTGTGGGTGGAGGAAAACCCACTGAAGCCATGCCCAGAagaatgagaacagaggagaggtgaggagggagatagagagaggatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052922 lncRNA downstream 164263 26129939 ~ 26130197 (-) True G1793721
TU2052921 lncRNA downstream 164690 26129531 ~ 26129770 (-) True G1793720
TU2052919 lncRNA downstream 167674 26124268 ~ 26126786 (-) True LOC110501642
TU2052787 lncRNA downstream 172802 26121378 ~ 26121658 (-) True G1793594
TU2052786 lncRNA downstream 173658 26120585 ~ 26120802 (-) True G1793593
TU2053048 lncRNA upstream 3476 26303384 ~ 26304276 (-) True G1793842
TU2053084 lncRNA upstream 36524 26336432 ~ 26336659 (-) True G1793874
TU2053085 lncRNA upstream 37782 26337690 ~ 26337921 (-) True G1793875
TU2053145 lncRNA upstream 73437 26373345 ~ 26373547 (-) True G1793934
TU2053156 lncRNA upstream 81370 26381278 ~ 26381533 (-) True G1793945
XM_021579343.2 mRNA downstream 69663 26123770 ~ 26224797 (-) False LOC110501642
XM_021579344.2 mRNA downstream 69664 26123770 ~ 26224796 (-) False LOC110501642
XM_021579340.2 mRNA downstream 280485 26010941 ~ 26013975 (-) True LOC110501639
XM_021579338.2 mRNA downstream 293236 25945133 ~ 26001224 (-) True LOC110501638
XM_021579339.2 mRNA downstream 293237 25945133 ~ 26001223 (-) False LOC110501638
XM_021579346.2 mRNA upstream 17327 26317235 ~ 26321085 (-) True LOC110501645
XM_021579348.2 mRNA upstream 88509 26388417 ~ 26447220 (-) True LOC110501646
XM_021579352.2 mRNA upstream 199695 26499603 ~ 26516319 (-) True LOC110501648
XM_021579356.2 mRNA upstream 234326 26534234 ~ 26567495 (-) True LOC110501651
XM_021579357.2 mRNA upstream 286730 26586638 ~ 26597980 (-) False glra2
TU2052534 other downstream 582841 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1308192 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1436575 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1444708 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1967333 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 968754 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1441464 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1441464 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1680756 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1709747 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile