RNA id: XM_021579346.2


Basic Information

Item Value
RNA id XM_021579346.2
length 1281
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC110501645
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26317235 ~ 26321085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAgcgctcacagacacacagacacagtctggAGCAGGTGCAATCACTCCGTGAGAATGTCAGTGGTGATGCTGATATCTCTCATCCTCCTCGCTCTGGGGTTTGCAGGTGCCGAGGAGTGTACTATGTATGCTGCTGTTGGGAGGAACAAGGTGATTGACCATGGCCTGGAGTTGCTTGGACAGTCATTTCACTTACGGTGGTCCCATGACGATAAGATCGTTTACGACACCAGGAAGAATACTGAGTCAAAACCCCAGACCACACCGAATGGTTCTCTGTTACTAACTAACCTACAGCTGAATAATACAGGGCCTTACCAGGTCACCATCTACGACAACGCGGGAAAACTCGTGTTAGAAAAAATAACTCACCTGTGTGTGCTCTCGCCTGTGTCTAAGCCACGTCTGACACACACCTGTACGGATGCATCTGTCAGTCTGAGGTGCGATGTGGGGAACTCTGTGGATGTTAACGTGGTGTGGAGCCGTAACAGACAAACACTGACAGGATCCACTGACAAAACTCTGACAATAACCAAGGCAATGCTGAAATCTGTAGACCTCTACGTGTGTACAGTGAGTAACAAAGCCAGTGAAGAGAAGAGTGACGATGTTAACCCTGAATGTGCAGAGGATTCTTCCTCTACAGTGCTCTTGTTTGGGATGAAGCTATGGCTGATGGTGGCGATTCTGGCTGGTGGAGGTGGTCTGCTCCTCATCCTCATCGTTATCACCTTGGTGTGTGTCTGCCAGAGCCGCAGGCGGCGCGCGAGTCGCATAAAAGaagaggaggagatgagactTGCACCCCTCACCCAGCCCATGCGTCAAgcatccctccaccaccaccatcacccacaCAAGTCCCAGAGCCGAAGCCGGCCGAAAAACAGAACTCCGTCACAGGCCACCCAAAACTCCAGACCAGTGCCTCGACCCAGGTCTCCACAGCCTAAACCAGATAATGCACCGCCCATACCAATTCCCAGGCGGACAGGACCCTGGAACCACAggagttaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggggggggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcgccTGCATGCTTGCATTCTTGTTAACCATAGCAACCCCTGTAGTCACACAATGGTTCAAACTTTGATTGCAGCAGTTACAAATAAAGAGCAGTGCTTCACCACTTGTGTATGTGTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2053048 lncRNA downstream 12959 26303384 ~ 26304276 (-) True G1793842
TU2052922 lncRNA downstream 187038 26129939 ~ 26130197 (-) True G1793721
TU2052921 lncRNA downstream 187465 26129531 ~ 26129770 (-) True G1793720
TU2052919 lncRNA downstream 190449 26124268 ~ 26126786 (-) True LOC110501642
TU2052787 lncRNA downstream 195577 26121378 ~ 26121658 (-) True G1793594
TU2053084 lncRNA upstream 15347 26336432 ~ 26336659 (-) True G1793874
TU2053085 lncRNA upstream 16605 26337690 ~ 26337921 (-) True G1793875
TU2053145 lncRNA upstream 52260 26373345 ~ 26373547 (-) True G1793934
TU2053156 lncRNA upstream 60193 26381278 ~ 26381533 (-) True G1793945
TU2053225 lncRNA upstream 77506 26398591 ~ 26402840 (-) True G1794009
LOC110502076 mRNA downstream 17327 26294460 ~ 26299908 (-) True LOC110502076
XM_021579343.2 mRNA downstream 92438 26123770 ~ 26224797 (-) False LOC110501642
XM_021579344.2 mRNA downstream 92439 26123770 ~ 26224796 (-) False LOC110501642
XM_021579340.2 mRNA downstream 303260 26010941 ~ 26013975 (-) True LOC110501639
XM_021579338.2 mRNA downstream 316011 25945133 ~ 26001224 (-) True LOC110501638
XM_021579348.2 mRNA upstream 67332 26388417 ~ 26447220 (-) True LOC110501646
XM_021579352.2 mRNA upstream 178518 26499603 ~ 26516319 (-) True LOC110501648
XM_021579356.2 mRNA upstream 213149 26534234 ~ 26567495 (-) True LOC110501651
XM_021579357.2 mRNA upstream 265553 26586638 ~ 26597980 (-) False glra2
XM_021579361.2 mRNA upstream 393612 26714697 ~ 26729795 (-) False LOC110501655
TU2052534 other downstream 605616 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1330967 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1459350 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1467483 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1990108 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 947577 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1420287 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1420287 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1659579 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1688570 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile