RNA id: XM_021579348.2


Basic Information

Item Value
RNA id XM_021579348.2
length 3234
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110501646
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26388417 ~ 26447220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTGTATAATTGAAGTTTCTTTAGTTTCTACAGCCGAGTCAACACGCAGTGTAGCCCGATCAGTGAACGCATAAAAAGCAGCACCCGTCGTCGAACAATGTTGCCCAGGAGCTTAACTGTATGTGTGACCCTGTGTCTATGGATTACAGTGTTGTCGACCCATGGAACCTTCGCTGCGAGGACCAGGCAGGATGACTCGTTCTTCACTACTAGCATTTACCGAGCAAGATGCGCCTCGAGATGTCTCAGCCTGCATATCACTCGCATCTCTGCTTTTTTCAAGCACTCCCAGAATAATGGATCCTTGGTTTGGTGTCAGAATCACAAACAGTGCTCAAAGTGCCTGGAGCCCTGCAAGGAATCCTGGGACCTGAAGGAAAATCAGTGCCAGGACTTATGCGAGCCCCTCTTTCCCAAGAAGCACTATGAGTGTTTGACTAGCTGTGAGTTCCTGAAGTCTGTAGAAGGGGTGAAACAGGGGGACTGCTCGGCCCCCGAGAAGGCCAGTGGCTTCGCTGCAGCCTGCGTGGAGAGctgtgaggaggatggagagtgCTCCGCTGTCAAGAAGTGCTGCTCCAATGGCTGCGGACACACCTGTCAGACCCCCAAGAACCTCTACAAAGGAGCACCCCTGAAGCCCAGAAAGGAGCTGGTGTTTGCAGAGCAGCCGTCTGGAGGCCTGGTGATCCGCTGGTCCTCTAAGTTCAACATCTCTGTGGAGCCTGTCCTGTACGTGGTGCAGCGCCGCTGGAACTATGGCATCCACCCCAGTGAGGACGACGCCACAGAGTGGGAGACCGTGGCACAGACTACAGAGGAGCGCATCCAACTGGCCGACATCAGAGCCAGCAGATGGTACCAGTTCAGAGTGGCTGCCGTCAATGTACACGGGACCCGCGGGTTTACTGCCCCCAGCAAGCACTTCCGCTCCTCCAGAGATCCCGCCGCCCCTCCCAGACCAACCAGCCTGCATGTTACTAACATGACGCTGGGTGCTGAGGGGACGGTGACAGTCCATCTTAACTGGACCCTGCCCTCGGAACCCGACATCCCCGTCCATCACTACAAAGTCTTCTGGAGCTGGACCGTTCCCAGGAAGTCGCTGGTGCCGtccaagaagaagaggaggaagaccacCAACGGGGCCCAGAGCTGGGTGGATCTGGAGGGCCTTCTGACTAACAATAGCTACACAGTGGAGCTGCAGGCAGTCACCTACTGGGGTCAGGTGCGTCTGAAGAGCTCCAAGGCATCACTCCACTTCAGCACCGCTGCCCAGAACAATGACTCTGTGAAACCAGTGTCCAAGAAGGAGGAGGTTATGATGCCTGTTGGCTCCACCCTTGGCAAGCGCCCGGCCGGCCCTCTGGAGGTGGGCACACCCTTCTACCAGGACGGCCAGCTACAGGTCCGCATTTACTGGAAGAACCGAGGGGatcCTTTGGTGAgtcgttaccatgtccagtggatgCCTGAGTACTGCAGTCACAACGAGACCAGAGGACCAGAGAAGTCAGTCACACAGGAGAACTACATCAACCTCCCGGGCCTGCTCTTCTCCTGCAAGTACAAAGTGACTGTTCACATGCTCAAGTCCAAGAGGCGCGCCAAGGACGAGAGCACCACCTTCCTCACCCCGTCCTGCACCACCATCAGGAGCAAGAGCCACAAACACATCCCCTGTCCTGGGGAGGAAGCCCCACTTCCCAAAGTGTTGGCTAAGTCGGAGAATCTGACAGCGTCCTTCTCCATCCACGAGGGAAACATCACAGGCAGCTTTCTGTGGCGGGTGTCACAGGTCCTGGCCCATCAACGAATCACAGGCTTCCAGGTCACCTGGGCTGAGGTCACCACTGAGAGCCGACAAAACAGCCTGCCCAACAGCATCATCTCTCAGTCCCAGATCCTGCCTCCAGACCATAGTCTGCTGGTGGTGTCTAACCTGCGGCCAGCCACGTACTACAGACTGGAGGTCCAGGTGATGACGTCAGGAGGTGAGGGTCCTGCCACCATTAAGACCTTCCAGACCCCCAGTGTGTTACCAGTCCTTCAACACCgacCCAGACTCAGGCAGCACCATCCACATCACCAGAAGTCCTCAGCGGAGAGACATTGAGACCCCTGACCCATCAGACCCAGTGCGACAGGAACCAATGTCTCTCAGCACTTTCACCCAGGGAGGGAATACAGTGTGGAACCAAACTGCAACACAGCAGACCATGAAATCTGACCCCAACCTATGTGAAATGGGTTCACCTTCAGGCTGCACAGCATATGCTTTCCCCTCAGTCCTTCCTGATTCCATCCACTGACTGGACTCTCCATACGGTTAGATGCATACTGATATGTAGGACTCTTTTCTTTAGGACTGGCTGGTTCATTCTCCTGTTATTTATGGGACACTAAGACTAAGTTGGTTTAGGAATTCTCAAACTGTTTGTTCCaatagaaacaataacaaagcaacaGTATTTTATCAATTCCAATTGTATATCGTTGTATATCTAGAACTCAAAGATTGTTAGATTATAAAAGGACAAGAAAAAAGTCAATCAGATTTTGTTTGAATATCATGGTAACTTAACTGAAGACACGTTAATAACCGTGGAGAGAACGGCATACAATTGTAAAACACAATCATGTATTCATTGAGAAAGGCGCGTGTTCACCTATTTATTTTGTTTCACCAAGTAAAAAGATGTCGCTTAGGCATACCCTATGTAGTGATGAATAATGTAACTAAAACCAGTGTAGTTTAACCCAGAATATTTCTCATAGTATGTTGCATGTAGAACATTAGAATTTAAAACTGTAAATAAATTACAAGCTTCAAATTGAATGCTTGTAATGGTTTTGCATGTCAAACGTTAGTGTTCTGTAGGCATGAACATGTCTGTTACCTCTTTTGGATATGTTAGCAATGTTTCATTAACAGTTAATTATATGGGGATTCATATGTCATGTTTATTAATGAAATTATAACGTTTATGTGGAAATTATGGAATTTTATGTTCTTGACTGTAGAAATATTTGTTGTGGAACAGTCAGTGAATGtctatttatttgtgtgtgtgtgttgtgtttttagTCTAGTGTTTTTGAACCGGCAAAACATCTTGTAAAGACATTTTGTAAAAATGGAATTGTAAATATAGTCTCATGTTACATGTTATTTTTCCATGGTAGAAACTGTACAAACTGGTAAGTAATAAAATAATCCTTAACCTAT

Function

GO:

id name namespace
GO:0010466 negative regulation of peptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG:

id description
K23413 ANOS1, KAL1, WFDC19; anosmin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2053156 lncRNA downstream 6884 26381278 ~ 26381533 (-) True G1793945
TU2053145 lncRNA downstream 14870 26373345 ~ 26373547 (-) True G1793934
TU2053085 lncRNA downstream 50496 26337690 ~ 26337921 (-) True G1793875
TU2053084 lncRNA downstream 51758 26336432 ~ 26336659 (-) True G1793874
TU2053048 lncRNA downstream 84141 26303384 ~ 26304276 (-) True G1793842
TU2053321 lncRNA upstream 36049 26483269 ~ 26491521 (-) True G1794101
TU2053320 lncRNA upstream 48758 26495978 ~ 26498010 (-) True G1794100
TU2053789 lncRNA upstream 71902 26519122 ~ 26581313 (-) True G1794528
TU2053788 lncRNA upstream 76850 26524070 ~ 26524927 (-) True G1794527
TU2053825 lncRNA upstream 149242 26596462 ~ 26597897 (-) True glra2
XM_021579346.2 mRNA downstream 67332 26317235 ~ 26321085 (-) True LOC110501645
LOC110502076 mRNA downstream 88509 26294460 ~ 26299908 (-) True LOC110502076
XM_021579343.2 mRNA downstream 163620 26123770 ~ 26224797 (-) False LOC110501642
XM_021579344.2 mRNA downstream 163621 26123770 ~ 26224796 (-) False LOC110501642
XM_021579340.2 mRNA downstream 374442 26010941 ~ 26013975 (-) True LOC110501639
XM_021579352.2 mRNA upstream 52383 26499603 ~ 26516319 (-) True LOC110501648
XM_021579356.2 mRNA upstream 87014 26534234 ~ 26567495 (-) True LOC110501651
XM_021579357.2 mRNA upstream 139418 26586638 ~ 26597980 (-) False glra2
XM_021579361.2 mRNA upstream 267477 26714697 ~ 26729795 (-) False LOC110501655
XM_021579359.2 mRNA upstream 267477 26714697 ~ 26752656 (-) False LOC110501655
TU2052534 other downstream 676798 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1402149 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1530532 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1538665 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2061290 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 821442 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1294152 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1294152 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1533444 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1562435 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile