RNA id: XM_021579356.2


Basic Information

Item Value
RNA id XM_021579356.2
length 2277
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110501651
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26534234 ~ 26567495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCATCAATGCTTACGTTGAAGACGCTTGAATTAATCCATGCAATGTTCTATACATTTGCATAAATGGACCTGAGATATCATATACCTATGTATATATTTGACGAGCTTGCCAAGAGTAAAAATGGCAACATATATTGTATATCAGTGGGTAGTACTGATTCATCTATCAACTTCCATGTAGCCACACTAGCCACCACAGAAGCAGTCACTTGAACAGAGTCACTTGAACATGGCGGAAGTTGGGCAGCTCGAATCAGAGCAGGACATTATTGAGAAGAAAATTGAGGAGACAAAACAGAAGTTCAAGAATGATTACGTCCAAGAATCGGACAAATATGACTCCAGAGATGTGGACAGGCTACAGAAGGATGACGCTCTGGTGGAGGCATACCTGACATGGCGACAATACTCTGTGGACGATGCCTTGAAAATGATTGACGATAGTTTCCTGTGGAGGAAAGAATTTGGTTTAAATGACCTCACTGAGAGCAGCATTCCAAAGTGGATGTTTGAGACGGGGGCTGTCTTCCTCCACGGCTACGACAAGGAAGGCAACAAGCTCTTCTGGTTCAAAGTCAAGCTACATACCAAGGATGCAAAGACCATCATGGACAAGAAGAAGTATGTTGCCTTCTGGCTGGAGCGCTATGCTAAGAGAGAGCCAGGGATGCCACTGACTGTTGTGTTCGACATGGCTGATTCAGGGATCAGCAATATCgACATGGATTTTGTGAAGTATATCATTAATTGCTTCAAAGTGTATTATCCAAAGTTTCTATCCAAAATGATCATTGTTGACATGCCATGGATCATGAATGctGCATGGAAGATTGTGAAGACATGGTTGGGTCCAGAAGCCATCAGCAAGCTCAAGTTTGCATCCAAAAACGAGATCCAGACGTTTATTGACCCTGAGTACCTCCCTCTTCACATGGGTGGAATGGACCCCTTCAAATACAGCTATCCTCCCCTTCCTGACGATGACTTCCAAACACCCACCTGTGAGAACGGACCAATCGTCAGCGAGGATGACAATGAGAGCAAGGAGGGCGAATCAGAGGGCAAGGAGTTGGAGTCAAGCTTCAGCTCTGAAGTCGCTGTCAAACCCAAAAAGGTGTATTTCTCTGAGGAGAGTCTGAGCAGTCTGAAGCTGGATGACAACGACAAAGGAGACTGTCGGACGAAGGGAGCTAGGAAGCCACTGACCACATTCAAGGGCCCTCTTCTAAACGTCAGTCCAGCAGAGGAGCTGAGTTTTGGCACCAAAGAGTCAGAGAGGAAGTGTCTTATCATCCTCGATAATGTGTCCAAGAATCAAGTGGccttcaagGTACGAACCACAGCACCTGAGAAGTACAGAGTGAAGCCCAGCAACAGCAGCTGTGAACCGGGCGCGTCTGTGGATATAGTGGTGTCTTTACATGGCGGCTACCAGGCGTCTCTGCAGGACCGCTTCTTGGTCATGGCTGCTGAAATGGAGCAGAACGCTGGTGCTGGATCACCAGAGCTCGCTCAGTTCTGGAAGGACGTGCCCAAAACCAAGATCATGGATCACAGATTACGATGTCACGTCCTGGAGAGCACTAAGCCCATTCTGAGCTATCCGAGTGGATGTGACAACCCTGTGGAAGGAGGAGCCAATGGCCACCCAGACCTGCACACAACGCTGATGCGTGTGATGGTGTGTAACGCCAGGCTGGAGCAGAAGCTGGACCAGTGTCTGTGGGTCCAGCAGGTCCTGATTGGTCTGGTGCTGGTTGTCATGATGTTCAGCTTCCTGACTCTCTACCACCTTTCTGGGGCTTCCTGACTTGACTCAACCTTGTCTACAGCAGCTTAAAGCTAAACCAACAGACAGGGCTGGTATTGGACttggtgataaaaaaaaaaacaaaggcaAACTCTCTTCTCTACAATGTCTGTCGTCATGAAATGGAGGAACGCTTTTTAATGTAGCAGTGAACTAGGGACATGTGGAGTTGTCAGTCAGTTGCCCAGAGAGATTCTTCATAGTCTCCTTGGCGTTGTGAGAGGTACCGTAGCTAAAGACTCGATACCGTGAAATGAAGTCAATAATGTATTTTTGTTACTAATCATGGAATTATAAATTAAGTATTTATTGCAATATGTAACATATTCATTATTTCAATATGTAATATGTAACATGATGAAGGAGATTTAGTTAATTTTTCTGATCCTAATGAACATTTCATTTGAAATATATAGTATAAAAATATCAGGTCAAGAATAAACGTGCACTTTTTCTTTAAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2053788 lncRNA downstream 9307 26524070 ~ 26524927 (-) True G1794527
TU2053320 lncRNA downstream 36224 26495978 ~ 26498010 (-) True G1794100
TU2053321 lncRNA downstream 42713 26483269 ~ 26491521 (-) True G1794101
TU2053225 lncRNA downstream 131394 26398591 ~ 26402840 (-) True G1794009
TU2053156 lncRNA downstream 152701 26381278 ~ 26381533 (-) True G1793945
TU2053825 lncRNA upstream 28967 26596462 ~ 26597897 (-) True glra2
TU2053901 lncRNA upstream 143904 26711399 ~ 26712405 (-) False G1794633
TU2053900 lncRNA upstream 144049 26711544 ~ 26712490 (-) True G1794633
TU2053931 lncRNA upstream 193037 26760532 ~ 26760738 (-) True G1794663
TU2053953 lncRNA upstream 228253 26795748 ~ 26796885 (-) True G1794685
XM_021579352.2 mRNA downstream 17915 26499603 ~ 26516319 (-) True LOC110501648
XM_021579348.2 mRNA downstream 87014 26388417 ~ 26447220 (-) True LOC110501646
XM_021579346.2 mRNA downstream 213149 26317235 ~ 26321085 (-) True LOC110501645
LOC110502076 mRNA downstream 234326 26294460 ~ 26299908 (-) True LOC110502076
XM_021579343.2 mRNA downstream 309437 26123770 ~ 26224797 (-) False LOC110501642
XM_021579357.2 mRNA upstream 19143 26586638 ~ 26597980 (-) False glra2
XM_021579361.2 mRNA upstream 147202 26714697 ~ 26729795 (-) False LOC110501655
XM_021579359.2 mRNA upstream 147202 26714697 ~ 26752656 (-) False LOC110501655
XM_021579360.2 mRNA upstream 147202 26714697 ~ 26752657 (-) True LOC110501655
XM_036958998.1 mRNA upstream 237923 26805418 ~ 26854630 (-) False LOC110502078
TU2052534 other downstream 822615 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1547966 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1676349 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1684482 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2207107 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 701167 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1173877 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1173877 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1413169 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1442160 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile