RNA id: XM_021579361.2


Basic Information

Item Value
RNA id XM_021579361.2
length 2552
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110501655
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26714697 ~ 26752657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAGAGCTGGAGTTTGCCATCCAGCCCAACACCACCGGCAAACAGCTCTTTGACCAGAGTGCTGGAGCAGCACAAGTTGACTAAGGAACAGTGGGAGGACAGAATACAGACCTGGCATGAGGAACACACAGGCATGCTCAGagagGACTCTGTGATGGAGTATCTGAAGATAGCCCAGGACCTGGAAATGTATGGAGTCAACTACTTTGAGATCAAGAACAAGAAGGGAACCGAGTTGTGGCTGGGTGTGGATGCACTGGGACTCAATATCTACGAACATGAGGACAAGTTGACACCAAAGATTGGCTTCCCCTGGAGTGAGATCAGAAACATCTCCTTCAACGACAAGAAGTTTGTCATCAAACCCATCGACAAGAAAGCCCCAGACTTTGTATTCTACGCACCACGGTTGCGGATTAACAAGCGTATCCTGGCGCTGTGCATGGGGAACCACGAGCTGTACATGAGGAGGAGGAAGCCTGATACCATCGAGGTGCAGCAGATGAAGGCCCAGGCCCGGGAGGAGAAACACCACAAACAGATGGAGAGAGCCCAGCTAGAAAACGAGAAGAAAAAACGAGCGCacgcagagaaagagagggagaagatggagaaagagaaggatgaGCTGATCGAGAGACTCAGACAGATTGAGGAACAGACGCTAAAGGCCCAGAaagAGCTGGAGGATCAGACACGCAGGGCCCTGGAGTTGGaccaggagaggaagagagcgaaggaagaggcagagaggttggagaaagagaaacaggcaGCAGAGGAGGCCAAAGCAGAGCTGGTTAAACAGGCTGCTGACCAGATGAAGAACCAGGAACAACTGGCCGCTGAGCTAGGAGAATTCACCGCCAAAATCGCTCTGCTTGAAGAGGCCAAAAGGAAAAAGGAAGAGGAAGCGACAGAATGGCAACACAAAGCCATCTCAGCCCAGGAGGACCTGGAGAAGACTAAAGAGGAGCTGAAgtctgtgatgtcatcacccCCGGCGCCAGAGCACGATGAGCAGGATGAGACGAATGCTGAGGGTAGCACCGAGCTGCACAGTGATGGGGTCACCAGCCACCACAGCGAGGAGGAACGTGTCACAGAGGCCCAGAAGAACGAACGCGTCAAGGAACAGCTGCAGgcTCTGAGTTCAGAGTTGGCCCAGGCGAGGGACGACACCAAGAAGACCCAGAATGACATGCTACATGCGGAGAACGTGAAGGCTGGGAGGGACAAGTACAAGACCCTGCGTCAGATCCGCCAGGGAAACACCAAGCAGCGCATCGACGAGTTTGAGTCCATGTGAGAGACCTCGCCCTCCCACCCTTGCATTGCCACGACAACGGCTCGTTTTTGTGTACAGCAAAACGTGCCCGTTCCCGTCCCATTCCCCCAAATCCCTACTTGCAAAAAGGCCAGAGGTGTGTGGATTCAATGTCCCGCCAACTATGCCTTGCCAAAGCTCTGCCCACTAGCGGATGGCCAATCAAACTGCTCCATGCTTAGAGCTCTGCCTAACCACATCTGGACTCGCCTAATCTGGAATGGCAAGCAACATACTGTCGAAGAGAATTTCTCCATGAACAAAGGATAATTTTAATGCTTGCATGTCTGATGTAAGAATGGATAGAGAAATTGGTTGATATCTTGCTTTCATTGAGAGGGAACAATTGCAGTTTAACTTTTGGATGTCGCTGGCCAGCTTGTATGTAAAAGCTTTAAATACCGTACCTTACGTTTATTTGTTTGCCATTAGATTAAGAATTTTAATAGTTTTCTTTTTTTAACGAAACAGCCTTATTTGTCTCATTTAATTTCGGCTTCATATTTAACTGTGGTGAGTTAGCTGTGCTCTAGTCAGTCATGGGTCAGCTGATGTTGAACCAGTGGTTTAATTCCTCCAGAATTTGACAACAGCGTTTATCTGTCCTCCCATTCTTCTACCTATACCTTTGTGTCGTTTATCGTCAATTGAAGCATttaccatttatttattttcgttCACAATAAAGATTccatgtatgtctcttatttccAGTCAGTCAAAGTGTTCATCCCCAGGTTGAACGAGGTAAAACCAAATTGGAGGGAGGCAGCAGTGCATTATTATATGGATAGAGTGATATGAGGAACTGTTAATTTTGAACATTCCAGATTCATCACCTTCCAGACATGTAAGAATGGGGAAAATAAAAGAAGCACAAAACCGCCCTAGCCACGTTGGTTTTCTAAATCAAGGTTATGTAAGGAATGATCAGGTCAGCCACCTCCTTGAATTTACAACTGGTGTTGTTCCtggtgaaagaaaaaaaaactgttattAAATTGTAAATATCAATTGTTTTATCCTTAATGTCAATCGATGTACAACAATGAACTTTACTAACCTTTATCATCTTCAGTTACAACTTTGAACCCATTAATCATtagttaaaaacatttaaaaaataaaaatgtaatgttgTAGTAACCTTTCCAGAGATATTACCTTTCATACAGTGTTGTAGAAAGATGAcgacacattataggctattcaTTCAACTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2053900 lncRNA downstream 2207 26711544 ~ 26712490 (-) True G1794633
TU2053901 lncRNA downstream 2292 26711399 ~ 26712405 (-) False G1794633
TU2053825 lncRNA downstream 116800 26596462 ~ 26597897 (-) True glra2
TU2053789 lncRNA downstream 133384 26519122 ~ 26581313 (-) True G1794528
TU2053788 lncRNA downstream 189770 26524070 ~ 26524927 (-) True G1794527
TU2053931 lncRNA upstream 30737 26760532 ~ 26760738 (-) True G1794663
TU2053953 lncRNA upstream 65953 26795748 ~ 26796885 (-) True G1794685
TU2054005 lncRNA upstream 129120 26858915 ~ 26859289 (-) True G1794736
TU2054039 lncRNA upstream 160936 26890731 ~ 26890949 (-) True G1794762
TU2054023 lncRNA upstream 166613 26896408 ~ 26964871 (-) False G1794748
XM_021579357.2 mRNA downstream 116717 26586638 ~ 26597980 (-) False glra2
XM_021579356.2 mRNA downstream 147202 26534234 ~ 26567495 (-) True LOC110501651
XM_021579352.2 mRNA downstream 198378 26499603 ~ 26516319 (-) True LOC110501648
XM_021579348.2 mRNA downstream 267477 26388417 ~ 26447220 (-) True LOC110501646
XM_021579346.2 mRNA downstream 393612 26317235 ~ 26321085 (-) True LOC110501645
XM_036958998.1 mRNA upstream 75623 26805418 ~ 26854630 (-) False LOC110502078
XM_036958997.1 mRNA upstream 75623 26805418 ~ 26876379 (-) False LOC110502078
XM_036958999.1 mRNA upstream 75623 26805418 ~ 26913306 (-) True LOC110502078
XM_021579369.2 mRNA upstream 193045 26922840 ~ 26933846 (-) True LOC110501658
XM_036959005.1 mRNA upstream 203725 26933520 ~ 26936528 (-) False LOC118943583
TU2052534 other downstream 1003078 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1728429 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1856812 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1864945 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2387570 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 538867 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1011577 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1011577 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1250869 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1279860 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile