RNA id: XM_036958998.1


Basic Information

Item Value
RNA id XM_036958998.1
length 4046
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110502078
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26805418 ~ 26913306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGTCGAAACGAATACACTGCTTCAGACCGAAAGACTCCTTGTGGATCTCGTTGACAGCGACTAGAAATTATAATTTGCCAGTGCGTTCTTTGAGCTTTCAGTGATGAACTCAGTCCAGGTTGATTTAACGCGTCTTGTCTCGTTTTTATCCGTTATATTGCCGTGAATTATGAATTTCTCACCGGTTTACCTCTTTATTCGTTTGGTCCTATCGCTGGATAACTTTGGATGCAATGGGAATATGAATACGTGCGCTGTGGTCTGAAGCAGCAGCAGACTAAAGCGATCTACTGTAGTAGCCTTGATGGAAACCATGTCGCCACAGCAGGGAACTATCGGACAGAATAGGTCTGGCTCTTTGACAGGGGACAGCAAGCTCTGCGCGCTGCCAGACAGCAAAAAGaAGATGAAGACCCTGGCCCATCGACGACAGTCTGCCCCCTCCCTGGTCATCAGCAAAGCACTTACCAAATCACGAAGCATGTCCAGGGAGAACTGCCTGTCTCCGGTCAGCCCAGAGACGTGTCCCCTGGTGCAGGCGTTCCTCTCCCCAGGCAGGGTGTTCCTGGCCCACGCCCACACCCAGCTGAAGACTGGCCTGCAGACGCAGGAGAGACACCTCTTCCTCTTCACTGACACACTCCTCGTCGCCAAGGCcaaGTCATCCACACACTTTAAACTGAAGGCTCAGGTGCGATTGTGTGAGATGTGGACAGCAGGCTGTATGGAGGAGGTGTGTGAGGGCAGCACCAGTCTAGACAGGAGCTTTGTCATGGGCTGGCCTACCTTCAACTGTGTCGCCAcattcagttcTGTGGAGCACAAGGAGAAGTGGCTTTTTCTCATCAAAAGTCGAATAAacgaagagaaagagaaggatgaCCCCAAGACCATTCCTCTGAAGATATTTGCAAAGGACATTGGGAATTGTGCTTATGCTAAGACTCTAGCTGTAAGTAATACAGACAGCACCACTGATGTCATCCAAATGGCACTACAGCAGTTTGGCATTTCGGGCTGTGTGAAAGACCACCAGTTGTGGGTGAGCTCCATTAAAGATGACTCCCCCTACCCGCTCATTGGGCACGAGTTTCCTTTCAGTATCAAGATGAGTCACATTCgggatggaggaggtggtggagggaagGATGCAGTTCCTTCTCCAGAGGGCCAGGGGGTGATGCTGCTGGACCAGTGTCTCCCTCCAGACACCCAGTGCCAGTTCATCCTCAAGTCCAGCCGGGTGGGTCCCAAACAGGCTCTGCTCTTAGagccAGGCCAGAAATCCTTTAAGAGGAAGAGGCCGTTGATTAACTGGGCCTTCTGGAGGGGTTCCAGTAGCCAGCTGGACAGTGTCCCCCTGTCCCCCACCTCCCTGTCCCCTACCCTGGGATGCCTGTTCGGACGGTCTCTCAGTTCCATCTGCCCTCCTGACCACAACCTGCCCAAACCTGTCATGGACATGCTGGTGTTTCTATACCAGGAGGGTCCATACACCAGGGGTATATTCCGTCGCTCTGCAGGAGCCAAAGCCTGCAGAGAGCTGAGAGACAGACTGGACAATGggacagaggacacacacacactcacacacgatTCTGTGTTTGTCACTGCTGCAGTCTTCAAGGACTTCCTGCGGAACATTCCGGGCAGTCTGCTGTGTGTGAATCTGTATGAGCAGTGGGTTGCAGTGATGGCGCAAGAGGAGGAAGAGCAGAGGATGCAAGCCATCCACAGGTTGGTCCATCTTCTGCCCAGTGATAACCTGTTGCTACTCAGACATGTGGTTGCCGTGCTCCACTGTATCCAAGACAACGCAAGTGACAACCAGATGAATGCCTTCAACCTGTCAGTGTGCATCGCTCCCAGCATGCTGTGGACCCCCGCCCCCTGTAGCCCAGAGGGGGAGGCAACCAAGAAGGTCTGTGAGCTTGTTCGGTTCCTGATTGAGAACTGCAGGAAGGTCTTGGGAGATGACGTCCCCTCTCTGTTTAGTGGATTCCCTCAGAAGAGCAATAGCAGCGACCATGGATCAGACGTGTCCTCTTTCCAGATGAATGACTCATCCTATGACAGTCTGGAGAATGAGTTAAACGAGGACCCAGAGTCGCCCTTCCAGGAGTCCCACCCTCTGAGAGACAAGGCCAAGCCTGACAGCTGCAGCAGAGACTCTGTCATCACCCTGAGTGACTGTGACCCCGACCCTGACCCTGAGGCTGACCTACATATTGCCCCACTTGCCAGACCCAGAAAGTTCACCCCCGCGCTACGGCAACCACGCCCACGGCAGTGCTATGTCCAATCACAGGGCCCTAGGAGGTTACGACGCAGCTCAGAGCCTGCCATCGGACACACCCCCGGAGCTCTGATCATCCAATCGGATAAGCACCATTTGGCGTCTCGTAAAGCGAGCTATGACGCGgcgatggagggagaggaagaggaggaggaggatgaagtgtTTCAGGGGCTCAGGGCTCTGCAGCTGAAAGACAAAGTGATTGCaggtggagaaagaggaggggttgGAACTCTCGGGCAGAGGAAACTGAAACACACCCCACCTTCTCCTTTACGATTGGACGCCAGCTGCTCTAGCCTGTCCTCCCCAGCAACCTCCCCCACAGGCTCCTCCCTTAGCTCCTTAGACTCCGCCTTCTCCCAATATTCCACAGACTATGTCACCAGCGCCGGCTTCCTGTTGGCTGAGTCTTCTCCCCGCTCCCCCCTTTCACCCCGCTCCCCCAAGTGCTCACCCCCAAAGAGAGATACAGTGGACTGGAGTGAAAGCCAGCCCCCTCATTCCTCCCGGACACCCTCTACCCACCACGGACTGCATCCCAACACCTGGCTCAAGAGGAACCTCCGACTGTCACTACGGCAACCCGACAATGGACACCTGGAGGAGGAAGTGGGGAAGGGGAAAGGGGTTAGCCTCCCAAAAGCCTCAGAGGGTAAAGGTGTAGAGGTGACCACCAAGAGGAGGTCCAGCAGCCCTCCATCCTACCAGCAGGCTATCCTACAGCTGCAGAAGAGTAGGTCTCCCTTCTACAGAGGCACAGAGAAACCCCTTACTGTCAGAGAGCTACAGTTGCTGCACGACCAGGCTTGCAATGCCACCCACAGACCCCCCACAGGACGTGACGTCACCCAGCAGCCCACTGGAACAGGAAGTGAGGTCATCCAGCCTCCCCAGGATGTGTTCTATGGACAGAGTGGCTCAACACTAACCCTCCAGAGGCAGAAGTCTCACTCCCTCACCCTGGCCATGGAGGCTGGCCGCAAGGTCCTCACCCTGCCTCGCAGAGCCTCTGAGCCCTCCATGGTGACAGATGCAGCCTCCATCCTCACCCTGGAAAGGCCCTTGGTCAAGTCCCAGACCCACGGGGTCAAAGGTCAGCAGCTCCCTGAGAGCGGACTTAGAGTGTCTGACATTGAGCCACAGCGCAACGGAGAAGGCCCAAACTCAGAGCCACgcttctgcctctctccctccgccACGCGGGCAGTAAGGGACTACTTTTCCTCACAGGAGCGGGCGGATTCAGGCGCGTGCCTGCAGAGGAGTCAGGAGGTCGCTCTGGCCCTTGTCCAGGGGAAGAGGGAGTGGCAAAGCAGGAAGTGTAGCGACCCTTGCGTGGACGACTTTGACCAAATGTTCTTTGCAGAGGAGTCTTATGTTTAAAATGACTTTTAAGAGACTCTGGGCTTTTTTTATATGGCTAATCAATGTTTGTAGCATAACGTTTTTATGTTGTCATATATGTACAGTTATTTTCCCTTGGTTATGGTAGATGCAGATGTTTGGTTGTGCTGGAGCTTTTCTTCCATATCTCTGGTAATCAACAACAGGTATAGGTCTATATTTATGTTCATATGCTTTGATATAGTGTTGTGCGAGCTGTAAGAAATCAAATGTGTATTTTTGTACATGATGTCAATACTGCTGCTGTCCTATAGAGTATATTTGCTACAGAATGCACCATTTGTATATTATGTACGCACATGTTACTgccaaataaaggaaacacttgatgAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2053953 lncRNA downstream 8533 26795748 ~ 26796885 (-) True G1794685
TU2053931 lncRNA downstream 44680 26760532 ~ 26760738 (-) True G1794663
TU2053900 lncRNA downstream 92928 26711544 ~ 26712490 (-) True G1794633
TU2053901 lncRNA downstream 93013 26711399 ~ 26712405 (-) False G1794633
TU2053825 lncRNA downstream 207521 26596462 ~ 26597897 (-) True glra2
TU2054005 lncRNA upstream 4285 26858915 ~ 26859289 (-) True G1794736
TU2054039 lncRNA upstream 36101 26890731 ~ 26890949 (-) True G1794762
TU2054023 lncRNA upstream 41778 26896408 ~ 26964871 (-) False G1794748
TU2054056 lncRNA upstream 72282 26926912 ~ 26927297 (-) True G1794779
TU2054027 lncRNA upstream 81957 26936587 ~ 26944274 (-) True LOC118943583
XM_021579360.2 mRNA downstream 52761 26714697 ~ 26752657 (-) True LOC110501655
XM_021579359.2 mRNA downstream 52762 26714697 ~ 26752656 (-) False LOC110501655
XM_021579361.2 mRNA downstream 75623 26714697 ~ 26729795 (-) False LOC110501655
XM_021579357.2 mRNA downstream 207438 26586638 ~ 26597980 (-) False glra2
XM_021579356.2 mRNA downstream 237923 26534234 ~ 26567495 (-) True LOC110501651
XM_021579369.2 mRNA upstream 68210 26922840 ~ 26933846 (-) True LOC110501658
XM_036959005.1 mRNA upstream 78890 26933520 ~ 26936528 (-) False LOC118943583
XM_036959006.1 mRNA upstream 78890 26933520 ~ 26936684 (-) False LOC118943583
XR_002470233.2 mRNA upstream 85130 26939760 ~ 26943228 (-) False LOC110501659
XM_021579372.2 mRNA upstream 294699 27149329 ~ 27186837 (-) False LOC110501663
TU2052534 other downstream 1093799 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1819150 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1947533 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1955666 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2478291 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 414032 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 886742 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 886742 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1126034 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1155025 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile