RNA id: XM_021579369.2


Basic Information

Item Value
RNA id XM_021579369.2
length 3114
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110501658
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26922840 ~ 26933846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGAGGGCCTCTCCAGATTCACCAACCGAAGCAAAGCCCCTATGCCAAACAGAGGGGGACCCCAAAAAGATCCCCAGGCCAAGGTCAGCACCCGTTGGACCTCAGAGCCCACCCAGAAGGTCAGTCAGCGCCCCCCCCGTACAGCGCAAGACTGCTGTGCTCAACAAGGAGAACAGACCAAGAGACCCGTACTCACCTCTTCTGGACAGTGTCAGACCAGAAGGCAAGACAGACAAGCTGGCCGCAGTGAGGCCCAGAGTCCTGGGCAGTCATCAGAGACAGAACATTGAGATGACTAACTGTCTAAGGCCAATGGAGGTGATTAGTAACAAGGTGGGCGGGACTTCTCAACCTGTGAGTAGAACTCCTGCAGCTGTAACTAAACAGTTTGGGcttgaggagaggactggagcaCTGCAAAGGAATGGAAGTGGTCCATCGAGACCGGATGGAGCAGCAGAGGGAAAATCAGGTGTTCCGGAGTATTCCTTTGAGCTGTCATTCCAGGAGAAGCTGCAGCACTGGGACTGTGACCGTCAGAAGGAGAGTGTGGAGCTGGGGGAGTTTGAGCTGCTGGAGCAGGCAGCCGAGgaactctccttctcctccaactCATCCTTTGTCATGAAGGTGCTGCAGCTGGACCAGCAACATCCCCTTCAGGGCAGCAGGGGGAGCCGTCCGCGACGCCTCTCCTCCACGCCCATCAAATCCCCCTCGCTGCCTAAAGGGGTTCACAGCTGGGGCACCAGTAGAAGTGGCCAAGGTACAGGGACCAGCTCATCTGAATCACCAGGAGTATCTGCTGTGAGGGTAATGAGGGAAAACAGCAAAGCCACTGATGAGGAGGAAGAAGATGAAGTGAGCGACGGCAAACATGAGGAAATCTCTGACATCTTGTTCCGCAGCAGCTCTGAATTCGGGGATCGGGAGGAAGTAGCTCAACCGTCATACCAGACTACAGTTTCCAGCAACCTCTGGGAAAACCCGCTCCCCGCATCCAACCCTCCATACGACAAGAGGTCatatcaggacagagagggaggctcAAGCCAGGCAGAGGAGGGCGGGCAGAGTGACCTTGACGACTCCACCCTTTTGGAGGACAGAGAAAATGGGGACCACGAGGGTCTGTTGGTGTTTGATGATGATGACACCTGGAACGACCTGGAGGAGGCTGGCAGCATCGTTGAGGACGACAGCAGAACAAGAGGCGCTGCAACAGGAAACCGACACACTTCCACAGCAACAGTGAATGACATTTCACCCTCAGAGAGGACACTGAAGAGAAAGGTGGCTGTGGCCAAAGGGACGGAGCTGGAGAGGATGTCTGTTATCACAGCAGCCAACCAGGAGCCAGATCCTCCTCCCGCTTCCCAGCTCATGGCCAGGCTGTTCCCCTCGCTAAAGCCCAAAACCCAGGCCCCTTCTCCACCAGAACCTAGAAAGACTGAGGACGGATCAGgCCAGCAGCAGTCCAGGCAGCTGAGGGAGAGGCTGGTGGAGCTGGAGCTGGAGATTGAACGTTTCAGGACAGAGAATGCTGCCTTGGCCAGACTCAGACAGGAGAACGAAAAGAACCAGGAGAAACTCCGGAAGGAGTGTGCTGATTTTGAGCAGCGCAAGGCTGAGGAGCTGGCCAAGTTTGAGGAGTTCAAGAGGGAGGAGACCAAGAAGCTGCAGAAGGAACGCAAGGTGTTTGAGAGGCATGCCTCTGCCGCCAGAGCCATACCAGACAAGAGGGAGCGTGACGAGATCCAGGCCATGAAGAAGCAGCTGAGTTTCCTGCAGGAGGAGTTGAAGCGGAGAGAGAGCCGCTGGTCCACCACACATAATCGTCTCCGGCAGCAGATAGACTCCCTGAGCTCAGACAACAGCAACCTGAAAGACGAGGTCCGCACCATGGAGAAACTACGCCTCAGCACCTGGAGGAAGATTGGGACAGACAGCGAAAGAGAGAAcgacaggagggagaaggagagggggagggagggatccaGGCCGTTGGACAGTTACATTGCTCTTGAAGCCAGGTGCCTCAAATTGGCAAGTCCTCCTGACACGGTGAGGAGCAGCCAACCACAGAGCAGCATCTCCTCTAAAGGCAGCCCATCAGGACACAGCCCCACCACTCAAGGAGGTATCAGGGGCATCCTGAAGAGGTCAGGCCCTACACCAGCACCCAGCCCCGCACACAGTTACAGCTCAGAGGATAGACCAGAATCTTTGACCAGGAGCCATCACCCAGCACAGAGCCACGACCACTCAAACAACCTGTCCCCTAGAGCTCGAGGTCTGCAGACTGAGACAGAGGTCAAAGAGCAACAAGAGCCAGGTCAAGATGTCCTCACCCACTCTGATGGAAAGATGGAGAGGGTTCTGCCCTGTGGAGGGAGACTCATCATCTTTCCCAATGGGACCAGGAAGGAGGTGTCAGCGGACGGACTGACAGTCAAAGTCACCTTCTTCAACGGGGACATCAAGCAGGTCATGGCTGACCAGAGAGTGATCTACTACTATGCGGATGCCCAGACCACTCACACCACCTATCCTGATGGCATCGAGGTTCTGCAGTTCCCCAACAACCAGACTGAGAAGCATTTCCCTGATGGCCGGAAGGAGATCACATTCCCTGACCAGACAGTCAAGAACCTCTATCcagatgggagggaggagagtgtcCTCACTGACGGGACCATCATACAAGTTAACTTGGATGGCAGTAAGGAGATCCAGTTCAACACAGGCCAGAAGGAGATCCACACAGCAGACTATAAGAGGAGGGAGTACCCAGATGGCACGTTGAAGACAGTCTATACCGATGGCAGACAGGAGACCCGCTACCCCACCGGACGCCTCAGAGTTAAAGACAAGGATGGTAACATTGTCATGGACAACAGGCCCTAGGATTGTTTATGCAATATGAGGTATCGTCATCGGAACTAAAGCTGAAGCACAGTTGAACATTTATGTTGGTGTGAGTTGTTTGACATAGGTTTTTAGTATGTTTGAGTTGAATGTAGTGATGAGTGACTTGTAAAAAATGTCTAATccatatttattttcttagttgattgtatttttttggtaaaataaatgtttaatcaAATCA

Function

GO: NA

KEGG:

id description
K11502 CENPJ; centromere protein J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054039 lncRNA downstream 31891 26890731 ~ 26890949 (-) True G1794762
TU2054005 lncRNA downstream 63551 26858915 ~ 26859289 (-) True G1794736
TU2053953 lncRNA downstream 125955 26795748 ~ 26796885 (-) True G1794685
TU2053931 lncRNA downstream 162102 26760532 ~ 26760738 (-) True G1794663
TU2053900 lncRNA downstream 210350 26711544 ~ 26712490 (-) True G1794633
TU2054027 lncRNA upstream 2741 26936587 ~ 26944274 (-) True LOC118943583
TU2054013 lncRNA upstream 5918 26939764 ~ 26943196 (-) False LOC110501659
TU2054014 lncRNA upstream 5918 26939764 ~ 26943196 (-) True LOC110501659
TU2054020 lncRNA upstream 27142 26960988 ~ 26964871 (-) True G1794748
TU2054190 lncRNA upstream 178015 27111861 ~ 27114211 (-) True G1794904
XM_036958999.1 mRNA downstream 9534 26805418 ~ 26913306 (-) True LOC110502078
XM_036958997.1 mRNA downstream 46461 26805418 ~ 26876379 (-) False LOC110502078
XM_036958998.1 mRNA downstream 68210 26805418 ~ 26854630 (-) False LOC110502078
XM_021579360.2 mRNA downstream 170183 26714697 ~ 26752657 (-) True LOC110501655
XM_021579359.2 mRNA downstream 170184 26714697 ~ 26752656 (-) False LOC110501655
XR_002470233.2 mRNA upstream 5914 26939760 ~ 26943228 (-) False LOC110501659
XM_021579372.2 mRNA upstream 215483 27149329 ~ 27186837 (-) False LOC110501663
XM_036959017.1 mRNA upstream 234829 27168675 ~ 27186838 (-) True LOC110501663
XM_021579376.2 mRNA upstream 406987 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 406987 27340833 ~ 27364591 (-) False LOC110501665
TU2052534 other downstream 1211221 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1936572 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2064955 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2073088 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2595713 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 334816 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 807526 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 807526 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1046818 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1075809 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile