RNA id: TU2054027


Basic Information

Item Value
RNA id TU2054027
length 797
lncRNA type read_through
GC content 0.50
exon number 2
gene id LOC118943583
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26933520 ~ 26944274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGATGGCAAGGGAGAGGCAGGCCTGGGTGGgatgagagaggtagagggaggggggggcaggCAGTAGTCCTCTACAGGCAGCAGGACTCCCTTCTCCAGGCAGAGTGACACATACTCCACCCCTACTACTGGAGTCTGATGCTTCTTCATGCTCCGCACCCGACTGGAGCTCAGACTGGACATACTGCTCGTCACTACGAGAGTACACTGTGGGgatgacagaaagagagcgatatatcaagagagaaagagagcaagaaagaCAGATCATCAATATCGCCAACATGTTTGAATCTAGCCTATGAATTCAAAATTGTTTGTGTTACTGTGCACCTGACCTGCTTATTGATCACATAGGAAATGCTGCCCCCATTCTCTGTTATTGCCAGCTTCAGCCTATTCTTCTCCTTATAAGGCAAATTCTTCAGCTCCAAAACCACAAAACAGTTGTCAAACAGAGCCATAGctgctctttccatgacagactgggTGTAGAGGGCGGTTGACATCACTTTGGTGCTCTCGTGGGTGTCCTGGAAAAGATCGGAGGAGAATCTGCTCCAGTTGAGTACACAGTTGCTTTGGGGTCGGGCCGAGGGATCGGAGGAGGCACAGGGCATTGAGATGCTCCTCCAGGGAGAGGGAGATCCCATCCCCCTGCTGCTCTGACTGATCCAGTGTCTTTGAATTAGATACAAAGAGAACGGCAGGTTAAGACAGATACAACTGACCCAGAGTCTGTGGCGCAAAACACACAGAAGGAAGAGCAGCAGGAAAAAAAGaagctgaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054056 lncRNA downstream 9290 26926912 ~ 26927297 (-) True G1794779
TU2054039 lncRNA downstream 45638 26890731 ~ 26890949 (-) True G1794762
TU2054005 lncRNA downstream 77298 26858915 ~ 26859289 (-) True G1794736
TU2053953 lncRNA downstream 139702 26795748 ~ 26796885 (-) True G1794685
TU2053931 lncRNA downstream 175849 26760532 ~ 26760738 (-) True G1794663
TU2054020 lncRNA upstream 16714 26960988 ~ 26964871 (-) True G1794748
TU2054190 lncRNA upstream 167587 27111861 ~ 27114211 (-) True G1794904
TU2054168 lncRNA upstream 201514 27145788 ~ 27146680 (-) True G1794884
TU2054169 lncRNA upstream 203436 27147710 ~ 27148363 (-) True G1794885
TU2054225 lncRNA upstream 243140 27187414 ~ 27187624 (-) True G1794937
XM_036959005.1 mRNA downstream 59 26933520 ~ 26936528 (-) False LOC118943583
XM_021579369.2 mRNA downstream 2741 26922840 ~ 26933846 (-) True LOC110501658
XM_036958999.1 mRNA downstream 23281 26805418 ~ 26913306 (-) True LOC110502078
XM_036958997.1 mRNA downstream 60208 26805418 ~ 26876379 (-) False LOC110502078
XM_036958998.1 mRNA downstream 81957 26805418 ~ 26854630 (-) False LOC110502078
XM_021579372.2 mRNA upstream 205055 27149329 ~ 27186837 (-) False LOC110501663
XM_036959017.1 mRNA upstream 224401 27168675 ~ 27186838 (-) True LOC110501663
XM_021579376.2 mRNA upstream 396559 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 396559 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 396559 27340833 ~ 27364592 (-) False LOC110501665
TU2052534 other downstream 1224968 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1950319 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2078702 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2086835 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2609460 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 324388 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 797098 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 797098 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1036390 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1065381 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile