RNA id: XR_002470233.2


Basic Information

Item Value
RNA id XR_002470233.2
length 1882
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110501659
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26939760 ~ 26943228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGTCACTCGTTCATTGTTTTCAGCCACTGGTAGCTTGTAGATGCATTATATgctctacagtcaattatgattgcatgtctacttatagtaactatataattattaatatacgcctactgtatgatagctagaaAATGAATTAGCTAACGTTAtcctgcctagctggaacttctgaaggaAAATTtgttatttctacaatttccaaaagctaaccaaagAAAAACATAATTACTTTTATGAGACCTGGTTATGCCGTCATGTGCATTAGAAGCACAATTTCTAACCtgtttacttacacttgtatgttgacgtCCATATTGACGTTGAGGTTTTACGTTTCGGTggacttttcttagcggatgtacaatgAACGCGAATTAAATTATGGGGGGGTTTCAGGCCCGAAGTGAACATATTTGTACACTTCCCTTGTTTGGACCGACGTCCAAGATGGTGACGGGGATTCCCCTaagggcataaggcgaggGTGCAGAATGCCGTGTATGGAGGATTGACTGGGGTGTACAGATGAGCAATGCCAGTGGAATTTGGGGACACAGTGGAATTTAGCTCAAAAGGTTGAGCGAGATCTTTTGAGTTCTCTGACAGCACCCCAGCCGCTTCTCCATCTCTACCTAAAACCCCTGCGTACCACTCCCACAACGTACTTAAGAAGAGTTTGGAAGGGGCCAATGTTCCACTTGGAGCCTTCTgcacaagtgcatcaaagctaaACCAAACAGTCATCATGTTCCAACAGCAGCCACACAGTAAACACGGCATCAACACAGTGTCAGAAATGCTTGTAATTTTATGACTTTTATGTTAAGCTAGAGGAGTGTAAATGTGCCAGCTTGGATGAGGTTACTAAAGCACAGAGTGCCTCCTATGCATGGTATGACACACTTACATTTCAGATCACTGCAAGCTCAGTAAAGAATGTTCCTGTGCGCACCTCAACAAATCCTGACCACTTTGTGCAGGAGCATCTCTTCCCCAGGTTCCATGGAAACTCAGAAACCACATATGGCAAGAAAAACGAGCAGGTGGCCTACACATGGATGGAGAGCTGTGGGTTTAGTTTGGAGAGTAGAGGCACAGTAGTGTGTCAAGGAGCCATGTCTTTCTGCAAGCCCACAGATGGAGTGTTAAACTCTCAAGAACTTCTAGAAATTAAAATGTCCTGTTCTGAGTGAAGTGTGAGTCTCTGGCAAACTCCTCGACGTGAAGCTGGTGGATGGAGTTCCTCAGCTACAACATAATGGAGCCTGTGGGTACTACGTGCAGGAGCAATTGGGCATGTTCTGCACAGGACTGGAGATATGCAAACTGTTGTCTGGGCTCTGTCCGAGCTGGTTGTTATTGATGTGCCTATTGATGTGAAGTTCTGTGCTGATGTTATCCCTAAACTGAAGGCATTCTATTTCCTACATATGCTGCCAAGGGTAGTATATGAGTTCCAGTTAGGCAGACTGTGTGCTCAAAATATGTTAATCTATGTGGTATCTAGGCTAATACTTTGTTTTGAAATAGTTCTTATATTTTGTGCCTTGTAAAGATCTCTGTTAGCTCTACCTTATTATCTAAGCATAACTCTTGATGTTTTTTGTTGTCTTGCACAGTTCTCTTCATATGCACATTTACCTGATTTATATTTGCATAATTCTTCTTGGTGTTTTTTACGTCTTGCCTTGTACAGCTCTCTTCATACATGTGTATCTAATGCCTAAGGATTACTCCTTATGATTTATGAATATTTTAATTGTACCTTGTATAGCTCTTTATTTTCATTTGGCACTTCATTAACTTATCTAAGCATACCATAACGCATCTTGCACTTGAGAAATGATGGCATTAATAAAAACATGaaattccacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054056 lncRNA downstream 12463 26926912 ~ 26927297 (-) True G1794779
TU2054039 lncRNA downstream 48811 26890731 ~ 26890949 (-) True G1794762
TU2054005 lncRNA downstream 80471 26858915 ~ 26859289 (-) True G1794736
TU2053953 lncRNA downstream 142875 26795748 ~ 26796885 (-) True G1794685
TU2053931 lncRNA downstream 179022 26760532 ~ 26760738 (-) True G1794663
TU2054020 lncRNA upstream 17760 26960988 ~ 26964871 (-) True G1794748
TU2054190 lncRNA upstream 168633 27111861 ~ 27114211 (-) True G1794904
TU2054168 lncRNA upstream 202560 27145788 ~ 27146680 (-) True G1794884
TU2054169 lncRNA upstream 204482 27147710 ~ 27148363 (-) True G1794885
TU2054225 lncRNA upstream 244186 27187414 ~ 27187624 (-) True G1794937
XM_036959006.1 mRNA downstream 3076 26933520 ~ 26936684 (-) False LOC118943583
XM_036959005.1 mRNA downstream 3232 26933520 ~ 26936528 (-) False LOC118943583
XM_021579369.2 mRNA downstream 5914 26922840 ~ 26933846 (-) True LOC110501658
XM_036958999.1 mRNA downstream 26454 26805418 ~ 26913306 (-) True LOC110502078
XM_036958997.1 mRNA downstream 63381 26805418 ~ 26876379 (-) False LOC110502078
XM_021579372.2 mRNA upstream 206101 27149329 ~ 27186837 (-) False LOC110501663
XM_036959017.1 mRNA upstream 225447 27168675 ~ 27186838 (-) True LOC110501663
XM_021579376.2 mRNA upstream 397605 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 397605 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 397605 27340833 ~ 27364592 (-) False LOC110501665
TU2052534 other downstream 1228141 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1953492 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2081875 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2090008 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2612633 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 325434 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 798144 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 798144 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1037436 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1066427 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile