RNA id: XM_021579375.2


Basic Information

Item Value
RNA id XM_021579375.2
length 3399
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110501665
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27340833 ~ 27364593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaGAAGTGAGTATCaatcagagagaggggagaaggacagaaaggggaagagaaagaggcaggAGAGCAGGACGGAGAGACAAAAAGCGGTAGATAGCCAGGAATATATTTAATGCTAACTTTCGAGCAATTAAATGCGCCGTGGGGATGGCGTATCATATCTTTAGAGGTTTGAAACACCATTTCTAGACATAGTTTTTGGATTACTTTCGTCATTGGCGACTTTTGCACCGTTTTAAACATTGACGTGTGCATTTTCCTTGTGCTCGCTGCGTGGACGGAGtttttgttttccctctggtggATTTGCCTTGAGAGAAATGAGTGACAGAAGGCGATCTGCTGCTGCTCTGAGCTCAAGAGCGCACGCCTTTTCGGTGGAAGCCCTGATCGGGTCAAATAAGAAGAGAAAGCTCCGGGGCTGGGAGGAAAAGGATCTGGAGTTGTCTATGGAGAGCCTCGCCAACAACGGACAATTAGGAGACGGCGACGACCCTGTGCATTGTTTGGATATCGACCCCGATTCTGAGGCGAGCCCGGGTTCAGATGGCGAGGGTCTGGCGGAGAGGACGTCGTGCTCCTTCGGCTCCCCTGAGGACCTAGCCCCGGCGGCCTGCGAGCTGTCTCCCGCTGCCTCAATGGAGGAGATTCAGGTGGAGCTGCAGTGCGCGGACCTCTGGAAGCGCTTCCATGAAATTGGCACGGAGATGATCATCACTAAAGCCGGGAGgcggATGTTCCCTGCAATGAGAGTAAAGATTGTGGGTCTGGACCCCCATCAGCAGTATTACATAGCCATGGATATTGTTCCTGTGGACAATAAGAGATACAGGTATGTGTACCACAGCTCCAAGTGGATGGTGGCGGGGAACGCGGACTCCCCCGTGCCCCCGCGGGTCTACATCCACCCAGACTCCCTGGCCTCTGGAGACACCTGGATGAGGCAGGTGGTCAGCTTCGACAAACTCAAACTCACCAACAATGAGCTGGACGACCAGGGCCATGTGAGTGAGCCGATCATCCTCCACTCCATGCATAAGTACCAGCCTCGTGTCCATGTGATCAGGAAGGACTTCAGCAGTGACCTGTCCCCCACAAAGCCTGTTCCCAGCGGAGAGGGAGTGAAGACCTTTAGCTTCCCTGAGACTGTCTTCACCACCGTCACGGCCTACCAGAACCAACAGATAACTAGACTAAAGATTGATCGCAACCCATTTGCTAAAGGATTTCGGGATTCAGGTAGAAACAGtctctcgttctctctctcacacaggacTGGGCTAGAGGCGATCATGGAGACCTATGCATTCTGGAGACCGCCTGTGAGGACACTCACGTTTGAGGACTTCACCAACATGCAGAAACAGCAAGGAGGAAGTACGGGCACCTCTCCCACCACCTCCAGCACAGGAGCCCCCTCCCCTTCTGGCACGGCCcacctcctgtccccctcctgctCCCCGCCCACCTTCCACCTGGCCCCCAACACCTTCAACGTGGGTTGCAGGGAGAGCCAGCTGTGCAGCATGGGCTTGTCTGAGTATCCGGCTTGCGCCCGCAGCAACATGGCGGCCCTGCAGGGCTACGGGGGACTGGCCGACAGCTCCTATGGACGCCTCCAAGCAGCAGGAAGCGCTGTGGCCTCCACCCAGCAGTCTGAATCCTTCCTGCCCCAGAGGACGTCCTCCCTGATCGCTGCAGGCATGCAAGGGGGTCATGGTCCTCTGTCTGGAAGCAGCGGTGGCGGGAAGATGGATGCCTACGGAAGTCAGCTGACCTCGTTTCCGGCATCCCAGCTGCAGTATGTGATGCAGGGTGGAGCTAGCTCTACCtctggctcctcctcctcctcaggctcctccccctcttctgcCCACATGTTCAGCGGGGGCCACCACCACGTGCAGCAGGGATCCTACAACGCCTTCTCActccacaacccctacaacctgTATGGATACAACTTCCCCACTTCCCCTCGCCTGGCTTCCAGCCCTGAGAAGACTCAGGGTGGCCTCCtgtgctcctcctcctctgccgGGGTGTTTGCCGAGCGCCAGTACCTGTCCAACGGTGGCATGGACAGCATGCACATGATCGGCAATCCCTCCGCTGGCCAGCAGGGGGCTGGCTCCTGTGATGGCCGTCAGTATGGCTCCTCCTCTCAGATGTCAATGCACATGGTGTAAAAACTGTCCTGTTATTTCAAGAAGTTCTGTCTCTTCTACTAAGATATGCTATTGATGAGTCATTTTACATTTAGCGTTGTTTGTAATACTGAGGTACAAAGTGAACCTTTCAAAAAACAGACTTTTCATCTcattgtgtttaaaaaaaataacaattcaCCTCACATGCTTTAAACACGGAGGTGGAACTGTTATTTAATTACCACAATAGTGTTAAAAAGGGGAAGTGGAACCATATACCGTGCTCTCAGTGCACATGTGGCTGTTTAGAACATTAACCCCAACCATGGGGACATACAGGGGGATACGTGAAAGAGAGGAGACCACATACTCTTACTGTCGAGGGATTCTCAGGAGTGAACCCATTATGGTGCAATAGTAATGACAGTCTACAGTAACTCAGCCTTGTTGCTATGGACTCTATCCAGTCCCGGACAGGATGTGACAGAGGCTCTGTGTGATCCAGAAACTTCACCTCCACTGCTCTAGTTTTAACAAGACATTTATCCAACATTATGCCATAACGTTGTGGCAACATTGGGAGAGAACTGAGAGGGTTGTGGCAGTGCCAGATATATATGAAGGACTTCAATATGAAGGTTTTCCCCTCTGGCCACTCAGCGGGGATGATGGGAGGATGATGGATGAGGCACAGAgggtgaatataatataatacagcacATGCTGGAAGGATGAAGTCACAAAACTAAAGGTCAGGGTGAGGGAGGAACTATGTGTGTCTGACAGTGGGGTCCAGTTGTTGACCCTGCACCTCTCGGTGGACACGCTGGACGAGAAGCTCTGTTCATGTGGACACTGAACATATAGTGAAATACAGTGAAATCACCACAATCTTATCAACACCTTTCCTCACAGACTGGAATGGCTTCACTATTTTTGAGTGGATTACCTTTTTAAAAGCATATATAAGATGGCGAATGCAAGCAAAAACCATAAGCTTTACAGTTGTTGTGTGAAAGGTTATAAAGATAGAATAGGAAACAGAGTAATTATAGTATGTTTTGGTGTGTTGTAGATAATTGTATTTAAGTGCCAAGCAATAATACAATAATATGGGCCAATCTATCATGAAAACAAATGTGAGAAAAAATGGAAATAGCAAaattattattttgaaaggccTTTTTAAAAAACTGTAAATACAGGTGCCAAGCACACAAAAGTTCAATAAACATTTTAATTCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054310 lncRNA downstream 11331 27328854 ~ 27329502 (-) True G1795020
TU2054244 lncRNA downstream 53388 27233524 ~ 27287445 (-) True G1794955
TU2054240 lncRNA downstream 106185 27229272 ~ 27234648 (-) True G1794952
TU2054241 lncRNA downstream 109254 27230537 ~ 27231579 (-) True G1794953
TU2054208 lncRNA downstream 137733 27201316 ~ 27203100 (-) True G1794920
TU2054388 lncRNA upstream 17276 27381868 ~ 27382072 (-) True G1795090
TU2054392 lncRNA upstream 19763 27384355 ~ 27384922 (-) True LOC110502080
TU2054394 lncRNA upstream 20460 27385052 ~ 27385280 (-) True G1795096
TU2054396 lncRNA upstream 22229 27386821 ~ 27387042 (-) True G1795098
TU2054461 lncRNA upstream 68591 27433183 ~ 27433525 (-) True G1795162
XM_036959017.1 mRNA downstream 153995 27168675 ~ 27186838 (-) True LOC110501663
XM_021579372.2 mRNA downstream 153996 27149329 ~ 27186837 (-) False LOC110501663
XR_002470233.2 mRNA downstream 397605 26939760 ~ 26943228 (-) False LOC110501659
XM_036959006.1 mRNA downstream 404149 26933520 ~ 26936684 (-) False LOC118943583
XM_036959005.1 mRNA downstream 404305 26933520 ~ 26936528 (-) False LOC118943583
LOC110502080 mRNA upstream 6475 27371067 ~ 27437479 (-) False LOC110502080
XM_021579393.2 mRNA upstream 127882 27492474 ~ 27498622 (-) False LOC110501670
XM_021579392.2 mRNA upstream 127882 27492474 ~ 27498625 (-) True LOC110501670
XM_021579394.2 mRNA upstream 137099 27501691 ~ 27517461 (-) False LOC110501672
XR_005038805.1 mRNA upstream 137099 27501691 ~ 27517462 (-) False LOC110501672
TU2054267 other downstream 54738 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1629214 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2354565 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2482948 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2491081 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 376780 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 376780 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 616072 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 645063 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 969632 28334224 ~ 28334621 (-) True G1796204

Expression Profile