RNA id: LOC110502080


Basic Information

Item Value
RNA id LOC110502080
length 1714
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110502080
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27371067 ~ 27437479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGGAGAACACCAATACGCCCTCACACCTGAAAAACAAAGCAGAGCCTCCAGGAGGGTATGTGTTCTCTGGGATCCAGCCCACGTCTGTGCCCCACCTAGGGAATTACCTTGGGGCTCTGAAGAGCTGGGTGTCCCTGCAGAGCCAGTACCCCTCAGTGCTCTACAGCATAGTGGACCTGCACTCCATCACCCAGTCCCAGGACCTCGCCCTTCTGCGGGTCAACACACTGGTCATGGTTGCCAGCCTGCTGGCCTGTGGCATTGAGACATCTATCCTCTTCCAGCAGTCACAGGTCTCTGAACACACTGAACTGTCCTGGATCCTGGGCTGCCTTGCCAGTATTCCCCCAACTCAGACACCTGCCTCAatgaaaagTAAACAGAAGAATGAGGGGAGTGTGGGGCTGTAGTCTTTCCCCGTCCTGCAGGCTGCGGATATTCTCCTTTACAAGTCCACTCACATCCCAGTAGGATAAGATCAGGTCCAACATCTGGACTTGGCTCAGGACCTAGCCCGCATCTTCAAGAACACATATGGAGACTTATTCCCTGAGCCACGTGTTCTGCTCAGTGAATTACTCTTCACACAGAAGGTCAAATCCCTCCGCGACCCCTCCAAGATGTCCAAGTCAGACCCCCAGAAGATGGCCACCGTCAACCTCATTGACTCGCCCGACGACATCGTCCTCAAAATCCGCTGTACCGTCAGACTTCACCTTCGTGGTGACCTTTGACCCTGCGGCACGCCTGGGTGTGTCCAACCTGGTGCTGATGCACGCAGCAGGTTGCACGGTGGAGGAGGCGGTGGGGCTAGACACGGGGAAGTACAAACAGCTGGTCGCCGAGGCCATGGAGGTGCGGCTCACACCAATCAGGGAGGAGATTACTTAAACAATAAATATATGCATAGGATATGCTATGGGATTTCTGTGGAAAGTCCAATGAGAACTCTCAAGCTCTAATACaataaacagacacacacgcacgtcaTCAGACACAGTCTGTGGGTAGTGAGTAATGAGTAGGCCAATGCCCTGTCAATAGTAGGCATTCTGCCTGTTCAGTTCTGGGCTCTTGTCTGCAGATGGAACATAAAGAAGAGCTCAGCCTCACTGTGATACTTGGATAGACTAACCTGGGATCCTGACTGCTTAGGATAATATTTTCACCCTCTTTGCTCACACCATCCTGGTGATGGAGCAGATCATCTGTGGGAGCTGGACTCTGATGTAGTTTTCCAGATCCATATTTACCTGGGAACTAACTAGTCAGATCACATCCAACTGCAGTTTATTTCAACTTTAGTATTTGCAGTGGCATAAGCAGCAGACTGAAAATACAGCCTATTCATATGAGCCAACAATAGCCTACAATGACTAAGGACTGTAAGCTACCAAATTTAATTTAATTCTAGACTCAGCGCAATGATGTTGGCACGagcagcaccgcagatattgagatgagcgagatgcaaCACTTTGCTCTCACGCAGTATCTGTGCAGAGATTCGCTTCACGCTGTTACAGCATGGTAGCCACAGGACTTTCATTTGCATttctttttttgtcaacgatATACACAAAACTCTCTtaatgtcaaaatggaagaaatattttaacatgtattttttttaaagatgaaaAATAAAACGGGAATATCATGATTTATATAAGTTGGcctattcaaccccctgagtcaataaatGTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054310 lncRNA downstream 41565 27328854 ~ 27329502 (-) True G1795020
TU2054244 lncRNA downstream 83622 27233524 ~ 27287445 (-) True G1794955
TU2054240 lncRNA downstream 136419 27229272 ~ 27234648 (-) True G1794952
TU2054241 lncRNA downstream 139488 27230537 ~ 27231579 (-) True G1794953
TU2054208 lncRNA downstream 167967 27201316 ~ 27203100 (-) True G1794920
TU2054475 lncRNA upstream 5612 27443091 ~ 27443296 (-) True G1795176
TU2054943 lncRNA upstream 8022 27445501 ~ 27445827 (-) True G1795580
TU2054944 lncRNA upstream 8402 27445881 ~ 27446178 (-) True G1795581
TU2054945 lncRNA upstream 11590 27449069 ~ 27449321 (-) True G1795582
TU2054954 lncRNA upstream 25666 27463145 ~ 27464838 (-) True G1795591
XM_036959020.1 mRNA downstream 6474 27340833 ~ 27364593 (-) True LOC110501665
XM_021579375.2 mRNA downstream 6475 27340833 ~ 27364592 (-) False LOC110501665
XM_036959021.1 mRNA downstream 6475 27340833 ~ 27364592 (-) False LOC110501665
XM_036959022.1 mRNA downstream 6475 27340833 ~ 27364592 (-) False LOC110501665
XM_021579376.2 mRNA downstream 6476 27340833 ~ 27364591 (-) False LOC110501665
XM_021579393.2 mRNA upstream 54995 27492474 ~ 27498622 (-) False LOC110501670
XM_021579392.2 mRNA upstream 54995 27492474 ~ 27498625 (-) True LOC110501670
XM_021579394.2 mRNA upstream 64212 27501691 ~ 27517461 (-) False LOC110501672
XR_005038805.1 mRNA upstream 64212 27501691 ~ 27517462 (-) False LOC110501672
XM_021579395.2 mRNA upstream 64212 27501691 ~ 27517629 (-) False LOC110501672
TU2054267 other downstream 84972 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1659448 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2384799 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2513182 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2521315 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 303893 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 303893 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 543185 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 572176 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 896745 28334224 ~ 28334621 (-) True G1796204

Expression Profile