RNA id: XM_021579392.2


Basic Information

Item Value
RNA id XM_021579392.2
length 2777
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110501670
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27492474 ~ 27498625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TccatttttcctctctctccccagcagtGTTATGATAAGTAGTTGGTCTGCTTTCTGTCTGTGCCTTTCTACTCCTTGGGTTTCAATTCCAAACATGGTTATCCTACTaggggtctctctctcctcctctccctctctctcccctctccctccctctctctctctgtactgccAACTGTGAGCTCTCCAGAGTAAGCAAATGGCTGAGTAAAATAGAGAGAAAATCaagagacagacacagcaaaATATAGACGGGGAAAAGAAGGGAGAAATCCATTCCAATCATATCTATGGTGTAATAACTGAAGCAGGACAAAGAAGATCTGTAGTCCAGCTGTACGTAAGAGAGCAACAGAGCAACTTTGACAATTCATACTATTTTTGGCAACGTATTCTCTGTTTTGACAATACCTTGATTGAACTTTTAAGAAATAGACCAACTCTAGTGACAACTTTTCAGACTCACTGGTAAAGTAACAACAACAACTTGAGGCTTGAGTCGGGGACTAACGTTTTCTTCCAGCTTTGACCTCAAGTAGCGTAGTAAACTTTGGAATATTCTGAGTGTAACTGTTTTTTTGGAACTTATTGAACAACTCGACAGTTTTGTTTGGAATAACAGCCTCCCTCCACCATGAGTGCAGACAACTCCACCCTGTTGGAGACGGTTTTCTACGGCCATCCACCATGTGATGGCTGGACCAACAACACAGAGGGGGCCTTCTACCACCTGGGCAACACCGTCTTATTCCTGGGGTACATGGGGGGCAGCAGCGCCTACGGCTCCCTGTTCATCTTTGGTTTCATGACGCCTGCCTTCACCTGCCTGGCCCTGTGGGGCTGGATGACCATGTGTGGGGTGGATGTGTTCACCTGGAACCTGCTGCTGCTGGTGGCCTGCGTGTTCCAGATCTGCCACCTCATATACAGGCTGCAACAGGATGGTTTGGCCAGCGAGGAGCTGTTGGCCCTCTACTCAGCCACCTACCTGCCCCTGGACGTGCCCGTACAGGTGTTCAAAGACATTGTGGAGGCCTGTGAGAACAAGGTGCTGGCCCTAAGAGTAGAGGAGACGTACGCAGTGGAGGGCAAGACGCCCATCAACCAGCTATCCTTTCTGCTGTCAGGGAGGATCCGTGTGTCTCTAGAAGGACAGTTCCTCCATTACATCTTCCCACTCCAGTTCCTGGACTCTCCTGAGTGGGAGTCTCTCAGACCCAATGAGGAGGGGAACTTTCAGGTGACCCTGACGGCGGAGACGGACTGCCGCTACATCTCGTGGCGCCGGCGCCGCCTTTACATGCTGCTGTCCAAGGATCGCTACATCACCCGCCTCTTCTCCGTCATGCTGGGCAGCGACATTGCCAACAAGCTCTACTCACTCAATGATAAGCTCTTTGCCAAGAGCGGTGTGCGCCTCGACATCCGCCttcccagtctctaccatgtccTGGCCCCCTCACCCCCGGGCAGCGAGGGTGAGGTCTGTAGCCGCAGTGGTAGTGCAAGGGACCGGGTAGACCCAGTGGAGCAGCAGGAGGCAGCAGTGGTGGATGTGGTCCCGGTGCCTGCCTACCAGAAGTCAGAGCCTCCAACACCCCCGACCCCACGGCTGCAGATACAAGAGAAGTCCCCCAACCCATCAACTGCAAGCCCCCGCCAACCCCAAGGCCCACACCCCCAGCGCCAGCCCTGGCCCTCAGACATGGAGATGCTCTCTGGTGAGGACTCCACCAGCCTGGTCCTGGAGGACTTCGCTGATATGACCGGGTCCTTAATGGATTATGGGAGTGAGAGGGATTATTTGAGGTAGAGGGCAGGTTGCTGGAGCTAACACACTGGGCCACTACTTAAGCTACATGAGGGGAAACCGCTGGGACTCTACCAATGCGATACCAGAGAGGAAGAGCTCCTCTGGCTCCCACGGACACCCCTAAGCTGTGATAGTTTTACCAAAAGTGCAAACAGTTCCAGGTTGTCTTTATTACAGTCATGCTGTGCAGCTTATAACACTATCACAAAATGTTTATGCATATCTACAGCATTTTCCTGAGAAGACCAGTGGAACTGCAGGAAAGACAACCTGGGATATAACTATCACCACTGTCCTGGGTGGAATCAGGCCCACCCAACACCACATCCCAGTCTCTCACCTAACATTATCTCACTCCTGTGATGTCATCTGTGCATGACAATAAAGGAGAGAGTGAGACTCTGGACACTGAACATAATTATGTTGTTAACTGAATTTATTAGTTAATGTCACAGAAAATAATCATATACTCTTTTTATTATGTCCCTCACATCTCCCATTCATCTGGATGGAAAGCCTTTTGAAGTGGAGATAGGATTATTCTATTATGATTCCACATTAAACTAATCATGTGCATTAGATGTTTTAACAGCCGGGGTTGGGTTGGCTAGCTAGGGGCACGTtaatcttgtttgtttgtgcagACATAATCTGAGAGAATTATGTTTGACTGAGAGCATGCTAAAAGGGTTTTCTCTTCCTGCATGCATATTTTCAAATCATGATTCCAAATtgaacaggcagacacacacttCTGCATTTTGTCTACGTGCTTGTAAAGGTGAGATGTCTCACACACATTTAGTACATTTAGTACATTTagacagaaaacatagaacaGGGACTCTactattttgtttttgttgtcccccccccaaaaaaatgtgggCCTACATATACATAATGTGATAAACATGTATTTTCATGGGGCCAATCTTTCTCCATAAAGTTCTTGGTGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054954 lncRNA downstream 27636 27463145 ~ 27464838 (-) True G1795591
TU2054945 lncRNA downstream 43153 27449069 ~ 27449321 (-) True G1795582
TU2054944 lncRNA downstream 46296 27445881 ~ 27446178 (-) True G1795581
TU2054943 lncRNA downstream 46647 27445501 ~ 27445827 (-) True G1795580
TU2054475 lncRNA downstream 49178 27443091 ~ 27443296 (-) True G1795176
TU2054957 lncRNA upstream 3066 27501691 ~ 27517101 (-) False LOC110501672
TU2054958 lncRNA upstream 3066 27501691 ~ 27517538 (-) True LOC110501672
TU2054968 lncRNA upstream 21040 27519665 ~ 27519898 (-) True G1795603
TU2055003 lncRNA upstream 74934 27573559 ~ 27576953 (-) True G1795632
TU2055031 lncRNA upstream 111378 27610003 ~ 27610400 (-) True G1795660
LOC110502080 mRNA downstream 54995 27371067 ~ 27437479 (-) False LOC110502080
XM_036959020.1 mRNA downstream 127881 27340833 ~ 27364593 (-) True LOC110501665
XM_021579375.2 mRNA downstream 127882 27340833 ~ 27364592 (-) False LOC110501665
XM_021579394.2 mRNA upstream 3066 27501691 ~ 27517461 (-) False LOC110501672
XR_005038805.1 mRNA upstream 3066 27501691 ~ 27517462 (-) False LOC110501672
XM_021579395.2 mRNA upstream 3066 27501691 ~ 27517629 (-) False LOC110501672
XM_021579399.2 mRNA upstream 40839 27539464 ~ 27544582 (-) True LOC110501675
NM_001124399.1 mRNA upstream 149105 27647730 ~ 27648708 (-) True il17d
TU2054267 other downstream 206379 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1780855 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2506206 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2634589 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2642722 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 242747 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 242747 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 482039 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 511030 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 835599 28334224 ~ 28334621 (-) True G1796204

Expression Profile