RNA id: XM_021579394.2


Basic Information

Item Value
RNA id XM_021579394.2
length 893
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110501672
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27501691 ~ 27517629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctactagcctaacacataacacacagctagCTGGTCGCTACAgtttactgtattctattctactgtattttagtcaatgccactctgacattgctcgtcctaatatttatatatttcctaattccattattttactttagatgtgtgtgtattgctgtgaattgttagatactactgcactgcgggagctaggaacacaagcatttcgctacacccacagtaacatctgctaaatatgtgtatgtgaccaaaacaatttgatggtcctaaagcacactggTGCTGCGTTGTGTATCACAGTGCAATGATAAAACACATTTGTTGCAGCTTGGAAATTGAAACTTAATGTCCCAGAAATCTTAGCGTAACCATCAAAAACATAACTGGCTACACCGTGTTGTATAAGGAAGGACACATAAATCGGCGTCCATGCGCATGAAGGcataacagctagctagctaaCCTGAAAAATGTCCTCCATGTCTGCTGCCAGCGTCGGGCCATTGAGGGCCATTGAGGGCACAGAGAAGAAACCACTGAAACCCTGTTGTGCGTGCCCCGAGACGAAGAAAGTCAGGGATGTTTGCATCATTGAGAAGGGTGAAGAAAGTTGCACAGATCTCATCGAGGCACATAAGGATTGTATGAGGGCGCTTGGATTCAAGATTTAATATAACTCCATATAATAAGTGGTCGTGTGCCGTTGGTGGCCGGCTGTCCGGAAGGAGACCTGGGATATTTCTTGTTTGTATTTATACTGCAACCTGAATGGAAGATGTGCTGCAAGGATGGTGTTCCACTGAGTGAAATGTGTTGTCTTAATGCTCAGATTTTCTGAATGATGTGAATCTTGTTCTGCTGATTTAGAATTAAATATATGTCCTATGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054966 lncRNA downstream 7259 27494157 ~ 27494432 (-) True G1795601
TU2054965 lncRNA downstream 7553 27493913 ~ 27494138 (-) True G1795600
TU2054954 lncRNA downstream 36853 27463145 ~ 27464838 (-) True G1795591
TU2054945 lncRNA downstream 52370 27449069 ~ 27449321 (-) True G1795582
TU2054944 lncRNA downstream 55513 27445881 ~ 27446178 (-) True G1795581
TU2054968 lncRNA upstream 2204 27519665 ~ 27519898 (-) True G1795603
TU2055003 lncRNA upstream 56098 27573559 ~ 27576953 (-) True G1795632
TU2055031 lncRNA upstream 92542 27610003 ~ 27610400 (-) True G1795660
TU2055065 lncRNA upstream 127362 27644823 ~ 27645027 (-) True G1795689
TU2055079 lncRNA upstream 157675 27675136 ~ 27675378 (-) True G1795703
XM_021579392.2 mRNA downstream 3066 27492474 ~ 27498625 (-) True LOC110501670
XM_021579393.2 mRNA downstream 3069 27492474 ~ 27498622 (-) False LOC110501670
LOC110502080 mRNA downstream 64212 27371067 ~ 27437479 (-) False LOC110502080
XM_036959020.1 mRNA downstream 137098 27340833 ~ 27364593 (-) True LOC110501665
XM_021579375.2 mRNA downstream 137099 27340833 ~ 27364592 (-) False LOC110501665
XM_021579399.2 mRNA upstream 22003 27539464 ~ 27544582 (-) True LOC110501675
NM_001124399.1 mRNA upstream 130269 27647730 ~ 27648708 (-) True il17d
LOC110502081 mRNA upstream 131773 27649234 ~ 27662614 (-) True LOC110502081
XM_036959032.1 mRNA upstream 189470 27706931 ~ 27738671 (-) False LOC110502082
XM_036959029.1 mRNA upstream 189470 27706931 ~ 27739829 (-) False LOC110502082
TU2054267 other downstream 215596 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1790072 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2515423 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2643806 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2651939 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 223911 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 223911 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 463203 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 492194 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 816763 28334224 ~ 28334621 (-) True G1796204

Expression Profile